This directory contains reciprocal-best netted chains for hg38-panTro4.

 - hg38.panTro4.rbest.net.gz: hg38-referenced recip.best net to panTro4.
 - hg38.panTro4.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from hg38 to panTro4 through the recip.best net.

 - panTro4.hg38.rbest.net.gz: panTro4-referenced recip.best net.
 - panTro4.hg38.rbest.chain.gz: recip.best "liftOver" chains.

 - directory axtRBestNet/ - reciprocal best alignments in axt file format  
   http://genome.ucsc.edu/goldenPath/help/axt.html