This directory contains reciprocal-best netted chains for hg38-nomLeu3. - hg38.nomLeu3.rbest.net.gz: hg38-referenced recip.best net to nomLeu3. - hg38.nomLeu3.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from hg38 to nomLeu3 through the recip.best net. - nomLeu3.hg38.rbest.net.gz: nomLeu3-referenced recip.best net. - nomLeu3.hg38.rbest.chain.gz: recip.best "liftOver" chains. - directory axtRBestNet/ - reciprocal best alignments in axt file format http://genome.ucsc.edu/goldenPath/help/axt.html