[DIR] Parent Directory

This directory contains data generated by the Snyder/UCD lab as part of the ENCODE project. Further information is available in the SYDH Histone track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:

  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2011-03-11wgEncodeSydhHistoneK562bH3k27me3bUcdRawDataRep1.fastq.gz  842M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=1; expId=912; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1352; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000912
      2011-03-11wgEncodeSydhHistoneK562bH3k27me3bUcdAlnRep1.bam.bai  5.7M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=1; expId=912; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1352; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000912
      2011-03-11wgEncodeSydhHistoneK562bH3k27me3bUcdAlnRep1.bam  320M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=1; expId=912; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1352; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000912
      2011-03-11wgEncodeSydhHistoneK562bH3k27me3bUcdRawDataRep2.fastq.gz  1001M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=2; expId=912; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1352; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000912
      2011-03-11wgEncodeSydhHistoneK562bH3k27me3bUcdAlnRep2.bam.bai  5.9M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=2; expId=912; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1352; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000912
      2011-03-11wgEncodeSydhHistoneK562bH3k27me3bUcdAlnRep2.bam  537M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=2; expId=912; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1352; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000912
      2011-03-11wgEncodeSydhHistoneK562bH3k27me3bUcdPk.narrowPeak.gz  2.2M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K27me3B; control=UCDavis; expId=912; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1352; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000912
      2011-03-11wgEncodeSydhHistoneK562bH3k27me3bUcdSig.bigWig  308M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K27me3B; control=UCDavis; expId=912; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1352; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000912
      2011-02-20wgEncodeSydhHistoneK562bH3k4me1UcdAlnRep1.bam.bai  5.5M  2010-05-20  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=1; expId=911; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1205; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000911
      2011-02-20wgEncodeSydhHistoneK562bH3k4me1UcdAlnRep1.bam  201M  2010-05-20  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=1; expId=911; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1205; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000911
      2011-02-20wgEncodeSydhHistoneK562bH3k4me1UcdRawDataRep1.fastq.gz  564M  2010-05-20  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=1; expId=911; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1205; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=RawData; type=fastq; dccAccession=wgEncodeEH000911
      2011-02-20wgEncodeSydhHistoneK562bH3k4me1UcdAlnRep2.bam.bai  5.8M  2010-05-20  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=2; expId=911; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1205; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000911
      2011-02-20wgEncodeSydhHistoneK562bH3k4me1UcdAlnRep2.bam  476M  2010-05-20  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=2; expId=911; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1205; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000911
      2011-02-20wgEncodeSydhHistoneK562bH3k4me1UcdRawDataRep2.fastq.gz  1.1G  2010-05-20  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=2; expId=911; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1205; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=RawData; type=fastq; dccAccession=wgEncodeEH000911
      2011-02-20wgEncodeSydhHistoneK562bH3k4me1UcdPk.narrowPeak.gz  2.0M  2010-05-20  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me1; control=UCDavis; expId=911; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1205; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000911
      2011-02-20wgEncodeSydhHistoneK562bH3k4me1UcdSig.bigWig  238M  2010-05-20  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me1; control=UCDavis; expId=911; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1205; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000911
      2011-03-11wgEncodeSydhHistoneK562bH3k4me3bUcdRawDataRep1.fastq.gz  897M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=1; expId=913; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1350; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000913
      2011-03-11wgEncodeSydhHistoneK562bH3k4me3bUcdAlnRep1.bam.bai  5.6M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=1; expId=913; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1350; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000913
      2011-03-11wgEncodeSydhHistoneK562bH3k4me3bUcdAlnRep1.bam  248M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=1; expId=913; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1350; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000913
      2011-03-11wgEncodeSydhHistoneK562bH3k4me3bUcdRawDataRep2.fastq.gz  1.3G  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=2; expId=913; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1350; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000913
      2011-03-11wgEncodeSydhHistoneK562bH3k4me3bUcdAlnRep2.bam.bai  5.6M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=2; expId=913; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1350; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000913
      2011-03-11wgEncodeSydhHistoneK562bH3k4me3bUcdAlnRep2.bam  390M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=2; expId=913; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1350; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000913
      2011-03-11wgEncodeSydhHistoneK562bH3k4me3bUcdPk.narrowPeak.gz  387K  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me3B; control=UCDavis; expId=913; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1350; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000913
      2011-03-11wgEncodeSydhHistoneK562bH3k4me3bUcdSig.bigWig  181M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K4me3B; control=UCDavis; expId=913; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1350; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000913
      2011-03-11wgEncodeSydhHistoneK562bH3k9acbUcdRawDataRep1.fastq.gz  890M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=1; expId=914; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1351; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000914
      2011-03-11wgEncodeSydhHistoneK562bH3k9acbUcdAlnRep1.bam.bai  5.7M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=1; expId=914; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1351; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000914
      2011-03-11wgEncodeSydhHistoneK562bH3k9acbUcdAlnRep1.bam  283M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=1; expId=914; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1351; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000914
      2011-03-11wgEncodeSydhHistoneK562bH3k9acbUcdRawDataRep2.fastq.gz  1.3G  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=2; expId=914; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1351; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000914
      2011-03-11wgEncodeSydhHistoneK562bH3k9acbUcdAlnRep2.bam.bai  5.8M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=2; expId=914; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1351; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000914
      2011-03-11wgEncodeSydhHistoneK562bH3k9acbUcdAlnRep2.bam  467M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=2; expId=914; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1351; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000914
      2011-03-11wgEncodeSydhHistoneK562bH3k9acbUcdPk.narrowPeak.gz  748K  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K9acB; control=UCDavis; expId=914; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1351; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000914
      2011-03-11wgEncodeSydhHistoneK562bH3k9acbUcdSig.bigWig  275M  2010-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=H3K9acB; control=UCDavis; expId=914; setType=exp; controlId=K562b/None/Input/UCDavis; subId=1351; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000914
      2010-03-11wgEncodeSydhHistoneK562bInputUcdRawData.fastq.gz  1.3G  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=Input; control=UCDavis; expId=672; setType=input; controlId=K562b/None/Input/UCDavis; subId=3839; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; labVersion=Illumina 2.0, low confidence sequences excluded; view=RawData; type=fastq; dateReSubmitted=2011-03-22; dccAccession=wgEncodeEH000672; origAssembly=hg18
      2010-03-11wgEncodeSydhHistoneK562bInputUcdAln.bam.bai  6.3M  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=Input; control=UCDavis; expId=672; setType=input; controlId=K562b/None/Input/UCDavis; subId=3839; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; labVersion=remapped from hg18, Illumina 2.0, low confidence sequences excluded; view=Alignments; type=bai; dateReSubmitted=2011-03-22; dccAccession=wgEncodeEH000672; origAssembly=hg18
      2010-03-11wgEncodeSydhHistoneK562bInputUcdAln.bam  1.6G  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=Input; control=UCDavis; expId=672; setType=input; controlId=K562b/None/Input/UCDavis; subId=3839; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; labVersion=remapped from hg18, Illumina 2.0, low confidence sequences excluded; view=Alignments; type=bam; dateReSubmitted=2011-03-22; dccAccession=wgEncodeEH000672; origAssembly=hg18
      2010-03-11wgEncodeSydhHistoneK562bInputUcdSig.bigWig  432M  2009-06-11  dataType=ChipSeq; cell=K562b; treatment=None; antibody=Input; control=UCDavis; expId=672; setType=input; controlId=K562b/None/Input/UCDavis; subId=3839; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Signal; type=bigWig; dateReSubmitted=2011-03-22; dccAccession=wgEncodeEH000672; origAssembly=hg18
      2011-02-04wgEncodeSydhHistoneNt2d1H3k27me3bUcdRawDataRep1.fastq.gz  1.3G  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=1; expId=908; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1137; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000908
      2011-02-04wgEncodeSydhHistoneNt2d1H3k27me3bUcdAlnRep1.bam.bai  5.9M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=1; expId=908; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1137; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000908
      2011-02-04wgEncodeSydhHistoneNt2d1H3k27me3bUcdAlnRep1.bam  440M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=1; expId=908; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1137; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000908
      2011-02-04wgEncodeSydhHistoneNt2d1H3k27me3bUcdRawDataRep2.fastq.gz  651M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=2; expId=908; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1137; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000908
      2011-02-04wgEncodeSydhHistoneNt2d1H3k27me3bUcdAlnRep2.bam.bai  5.9M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=2; expId=908; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1137; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000908
      2011-02-04wgEncodeSydhHistoneNt2d1H3k27me3bUcdAlnRep2.bam  487M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K27me3B; control=UCDavis; replicate=2; expId=908; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1137; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000908
      2011-02-04wgEncodeSydhHistoneNt2d1H3k27me3bUcdPk.narrowPeak.gz  650K  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K27me3B; control=UCDavis; expId=908; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1137; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000908
      2011-02-04wgEncodeSydhHistoneNt2d1H3k27me3bUcdSig.bigWig  316M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K27me3B; control=UCDavis; expId=908; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1137; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000908
      2011-03-11wgEncodeSydhHistoneNt2d1H3k36me3bUcdRawDataRep1.fastq.gz  799M  2010-06-11  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=1; expId=915; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1354; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000915
      2011-03-11wgEncodeSydhHistoneNt2d1H3k36me3bUcdAlnRep1.bam.bai  5.8M  2010-06-11  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=1; expId=915; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1354; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000915
      2011-03-11wgEncodeSydhHistoneNt2d1H3k36me3bUcdAlnRep1.bam  348M  2010-06-11  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=1; expId=915; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1354; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000915
      2011-03-11wgEncodeSydhHistoneNt2d1H3k36me3bUcdRawDataRep2.fastq.gz  694M  2010-06-11  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=2; expId=915; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1354; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000915
      2011-03-11wgEncodeSydhHistoneNt2d1H3k36me3bUcdAlnRep2.bam.bai  5.9M  2010-06-11  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=2; expId=915; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1354; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000915
      2011-03-11wgEncodeSydhHistoneNt2d1H3k36me3bUcdAlnRep2.bam  531M  2010-06-11  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=2; expId=915; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1354; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000915
      2011-03-11wgEncodeSydhHistoneNt2d1H3k36me3bUcdPk.narrowPeak.gz  2.3M  2010-06-11  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K36me3B; control=UCDavis; expId=915; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1354; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000915
      2011-03-11wgEncodeSydhHistoneNt2d1H3k36me3bUcdSig.bigWig  315M  2010-06-11  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K36me3B; control=UCDavis; expId=915; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1354; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000915
      2011-03-21wgEncodeSydhHistoneNt2d1H3k4me1UcdAlnRep1.bam.bai  5.9M  2010-06-22  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=1; expId=917; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1830; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000917
      2011-03-21wgEncodeSydhHistoneNt2d1H3k4me1UcdAlnRep1.bam  396M  2010-06-22  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=1; expId=917; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1830; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000917
      2011-03-21wgEncodeSydhHistoneNt2d1H3k4me1UcdRawDataRep1.fastq.gz  551M  2010-06-22  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=1; expId=917; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1830; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=RawData; type=fastq; dccAccession=wgEncodeEH000917
      2011-03-21wgEncodeSydhHistoneNt2d1H3k4me1UcdAlnRep2.bam.bai  5.9M  2010-06-22  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=2; expId=917; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1830; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000917
      2011-03-21wgEncodeSydhHistoneNt2d1H3k4me1UcdAlnRep2.bam  421M  2010-06-22  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=2; expId=917; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1830; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000917
      2011-03-21wgEncodeSydhHistoneNt2d1H3k4me1UcdRawDataRep2.fastq.gz  607M  2010-06-22  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me1; control=UCDavis; replicate=2; expId=917; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1830; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=RawData; type=fastq; dccAccession=wgEncodeEH000917
      2011-03-21wgEncodeSydhHistoneNt2d1H3k4me1UcdPk.narrowPeak.gz  423K  2010-06-22  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me1; control=UCDavis; expId=917; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1830; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000917
      2011-03-21wgEncodeSydhHistoneNt2d1H3k4me1UcdSig.bigWig  290M  2010-06-22  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me1; control=UCDavis; expId=917; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1830; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000917
      2011-02-04wgEncodeSydhHistoneNt2d1H3k4me3bUcdRawDataRep1.fastq.gz  553M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=1; expId=909; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1122; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein. G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000909
      2011-02-04wgEncodeSydhHistoneNt2d1H3k4me3bUcdAlnRep1.bam.bai  5.8M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=1; expId=909; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1122; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000909
      2011-02-04wgEncodeSydhHistoneNt2d1H3k4me3bUcdAlnRep1.bam  318M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=1; expId=909; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1122; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000909
      2011-02-04wgEncodeSydhHistoneNt2d1H3k4me3bUcdRawDataRep2.fastq.gz  624M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=2; expId=909; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1122; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation:Protein.G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000909
      2011-02-04wgEncodeSydhHistoneNt2d1H3k4me3bUcdAlnRep2.bam.bai  5.8M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=2; expId=909; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1122; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000909
      2011-02-04wgEncodeSydhHistoneNt2d1H3k4me3bUcdAlnRep2.bam  360M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me3B; control=UCDavis; replicate=2; expId=909; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1122; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000909
      2011-02-04wgEncodeSydhHistoneNt2d1H3k4me3bUcdPk.narrowPeak.gz  532K  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me3B; control=UCDavis; expId=909; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1122; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000909
      2011-02-04wgEncodeSydhHistoneNt2d1H3k4me3bUcdSig.bigWig  233M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K4me3B; control=UCDavis; expId=909; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1122; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000909
      2011-02-04wgEncodeSydhHistoneNt2d1H3k9acbUcdRawDataRep1.fastq.gz  540M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=1; expId=910; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1173; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000910
      2011-02-04wgEncodeSydhHistoneNt2d1H3k9acbUcdAlnRep1.bam.bai  5.8M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=1; expId=910; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1173; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000910
      2011-02-04wgEncodeSydhHistoneNt2d1H3k9acbUcdAlnRep1.bam  357M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=1; expId=910; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1173; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000910
      2011-02-04wgEncodeSydhHistoneNt2d1H3k9acbUcdRawDataRep2.fastq.gz  567M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=2; expId=910; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1173; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunoprecipitation: Protein G magnetic beads.; view=RawData; type=fastq; dccAccession=wgEncodeEH000910
      2011-02-04wgEncodeSydhHistoneNt2d1H3k9acbUcdAlnRep2.bam.bai  5.8M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=2; expId=910; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1173; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000910
      2011-02-04wgEncodeSydhHistoneNt2d1H3k9acbUcdAlnRep2.bam  360M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K9acB; control=UCDavis; replicate=2; expId=910; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1173; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000910
      2011-02-04wgEncodeSydhHistoneNt2d1H3k9acbUcdPk.narrowPeak.gz  792K  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K9acB; control=UCDavis; expId=910; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1173; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000910
      2011-02-04wgEncodeSydhHistoneNt2d1H3k9acbUcdSig.bigWig  253M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=H3K9acB; control=UCDavis; expId=910; setType=exp; controlId=NT2-D1/None/Input/UCDavis; subId=1173; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000910
      2011-02-04wgEncodeSydhHistoneNt2d1InputUcdSig.bigWig  209M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=Input; control=UCDavis; expId=654; setType=input; controlId=NT2-D1/None/Input/UCDavis; subId=1123; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000654
      2011-02-04wgEncodeSydhHistoneNt2d1InputUcdAln.bam.bai  6.4M  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=Input; control=UCDavis; expId=654; setType=input; controlId=NT2-D1/None/Input/UCDavis; subId=1123; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000654
      2011-02-04wgEncodeSydhHistoneNt2d1InputUcdAln.bam  1.1G  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=Input; control=UCDavis; expId=654; setType=input; controlId=NT2-D1/None/Input/UCDavis; subId=1123; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000654
      2011-02-04wgEncodeSydhHistoneNt2d1InputUcdRawData.fastq.gz  2.3G  2010-05-04  dataType=ChipSeq; cell=NT2-D1; treatment=None; antibody=Input; control=UCDavis; expId=654; setType=input; controlId=NT2-D1/None/Input/UCDavis; subId=1123; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=UCD; view=RawData; type=fastq; dccAccession=wgEncodeEH000654
      2011-08-02wgEncodeSydhHistoneU2osH3k36me3bUcdAlnRep1.bam.bai  5.8M  2010-11-02  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=1; expId=920; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2763; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000920
      2011-08-02wgEncodeSydhHistoneU2osH3k36me3bUcdAlnRep1.bam  467M  2010-11-02  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=1; expId=920; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2763; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000920
      2011-08-02wgEncodeSydhHistoneU2osH3k36me3bUcdRawDataRep1.fastq.gz  1.5G  2010-11-02  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=1; expId=920; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2763; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=RawData; type=fastq; dccAccession=wgEncodeEH000920
      2011-08-02wgEncodeSydhHistoneU2osH3k36me3bUcdAlnRep2.bam.bai  5.8M  2010-11-02  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=2; expId=920; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2763; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000920
      2011-08-02wgEncodeSydhHistoneU2osH3k36me3bUcdAlnRep2.bam  503M  2010-11-02  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=2; expId=920; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2763; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000920
      2011-08-02wgEncodeSydhHistoneU2osH3k36me3bUcdRawDataRep2.fastq.gz  1.1G  2010-11-02  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K36me3B; control=UCDavis; replicate=2; expId=920; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2763; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=RawData; type=fastq; dccAccession=wgEncodeEH000920
      2011-08-02wgEncodeSydhHistoneU2osH3k36me3bUcdPk.narrowPeak.gz  2.6M  2010-11-02  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K36me3B; control=UCDavis; expId=920; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2763; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000920
      2011-08-02wgEncodeSydhHistoneU2osH3k36me3bUcdSig.bigWig  351M  2010-11-02  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K36me3B; control=UCDavis; expId=920; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2763; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000920
      2011-05-16wgEncodeSydhHistoneU2osH3k9me3UcdRawDataRep1.fastq.gz  851M  2010-08-16  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K9me3; control=UCDavis; replicate=1; expId=919; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2108; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunopreciptation: Staph A.; view=RawData; type=fastq; dccAccession=wgEncodeEH000919
      2011-05-16wgEncodeSydhHistoneU2osH3k9me3UcdAlnRep1.bam.bai  5.9M  2010-08-16  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K9me3; control=UCDavis; replicate=1; expId=919; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2108; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000919
      2011-05-16wgEncodeSydhHistoneU2osH3k9me3UcdAlnRep1.bam  475M  2010-08-16  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K9me3; control=UCDavis; replicate=1; expId=919; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2108; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000919
      2011-05-16wgEncodeSydhHistoneU2osH3k9me3UcdRawDataRep2.fastq.gz  944M  2010-08-16  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K9me3; control=UCDavis; replicate=2; expId=919; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2108; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; labVersion=Method of Chromatin Fragmentation: Sonication. Method of Immunopreciptation: Staph A.; view=RawData; type=fastq; dccAccession=wgEncodeEH000919
      2011-05-16wgEncodeSydhHistoneU2osH3k9me3UcdAlnRep2.bam.bai  5.7M  2010-08-16  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K9me3; control=UCDavis; replicate=2; expId=919; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2108; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dccAccession=wgEncodeEH000919
      2011-05-16wgEncodeSydhHistoneU2osH3k9me3UcdAlnRep2.bam  302M  2010-08-16  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K9me3; control=UCDavis; replicate=2; expId=919; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2108; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dccAccession=wgEncodeEH000919
      2011-05-16wgEncodeSydhHistoneU2osH3k9me3UcdSig.bigWig  271M  2010-08-16  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K9me3; control=UCDavis; expId=919; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2108; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dccAccession=wgEncodeEH000919
      2011-05-16wgEncodeSydhHistoneU2osH3k9me3UcdPk.narrowPeak.gz  1.6M  2010-08-16  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=H3K9me3; control=UCDavis; expId=919; setType=exp; controlId=U2OS/None/Input/UCDavis; subId=2108; dataVersion=ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0. Submitted even though replicate peak overlap below threshold because data visually looks good, but calling peaks for H3K9me3 is very difficult due to the nature of the signal and not the quality of the data. When we call peaks using our program that has been modified for histones, we get a ~60% overlap. That's about as good as it gets with H3K9me3 peak calling.; view=Peaks; type=narrowPeak; dccAccession=wgEncodeEH000919
      2011-03-11wgEncodeSydhHistoneU2osInputUcdSig.bigWig  357M  2010-06-11  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=Input; control=UCDavis; expId=916; setType=input; controlId=U2OS/None/Input/UCDavis; subId=3839; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; labVersion=PeakSeq1.0; view=Signal; type=bigWig; dateReSubmitted=2011-03-22; dccAccession=wgEncodeEH000916
      2011-03-11wgEncodeSydhHistoneU2osInputUcdAln.bam.bai  6.0M  2010-06-11  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=Input; control=UCDavis; expId=916; setType=input; controlId=U2OS/None/Input/UCDavis; subId=3839; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bai; dateReSubmitted=2011-03-22; dccAccession=wgEncodeEH000916
      2011-03-11wgEncodeSydhHistoneU2osInputUcdAln.bam  598M  2010-06-11  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=Input; control=UCDavis; expId=916; setType=input; controlId=U2OS/None/Input/UCDavis; subId=3839; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=Alignments; type=bam; dateReSubmitted=2011-03-22; dccAccession=wgEncodeEH000916
      2011-03-11wgEncodeSydhHistoneU2osInputUcdRawData.fastq.gz  864M  2010-06-11  dataType=ChipSeq; cell=U2OS; treatment=None; antibody=Input; control=UCDavis; expId=916; setType=input; controlId=U2OS/None/Input/UCDavis; subId=3839; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=UCD; view=RawData; type=fastq; dateReSubmitted=2011-03-22; dccAccession=wgEncodeEH000916
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