The files in this directory contain data and support information for the 
ENCODE CpG Methylation by Methyl 450K Bead Arrays (Illumina) data generated and 
submitted by the HudsonAlpha Institute for Biotechnology. 

The files are:

wgEncodeHaibMethyl450IlluminaProtocol.pdf:

The protocol provided by Illumina for the Infinium HS Assay 
(Infinium HumanMethylation450 BeadChip) used to generate the data.  

wgEncodeHaibMethyl450CpgIslandDetails.txt:

The manifest file for the Infinium HumanMethylation450 BeadChip. 
It contains the information for each probe on the array. 
The genomic location of each CpG assayed (listed by cg ID, e.g. cg00061679)
is provided in this file as: Genome_Build, CHR, MAPINFO. 

wgEncodeHaibMethyl450BetaValues.txt:

Beta value obtained for each CpG assayed for all 63 samples.  
Beta values were calculated with Illumina's Bead Studio software 
using the Methylation Module v3.2