[DIR] Parent Directory

This directory contains data generated by the Gingeras/GIS lab as part of the ENCODE project. Further information is available in the GIS RnaSeq track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the dow nloads:

  • files.txt which is a tab-separated file with the nam e and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2010-07-29wgEncodeGisRnaSeqGm12878CytosolPapAlnRep1.bam.bai  3.2M  2009-10-29  dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=269; labExpId=crg-9; subId=1399; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-03; grant=Gingeras; lab=GIS; view=Alignments; type=bai; bioRep=gen0106C; dccAccession=wgEncodeEH000269; geoSampleAccession=GSM672834; labProtocolId=gen0106C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqGm12878CytosolPapAlnRep1.bam  640M  2009-10-29  dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=269; labExpId=crg-9; subId=1399; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-03; grant=Gingeras; lab=GIS; view=Alignments; type=bam; bioRep=gen0106C; dccAccession=wgEncodeEH000269; geoSampleAccession=GSM672834; labProtocolId=gen0106C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqGm12878CytosolPapMinusRawRep1.bigWig  69M  2009-10-29  dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=269; labExpId=crg-9; subId=1399; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-03; grant=Gingeras; lab=GIS; view=MinusRawSignal; type=bigWig; bioRep=gen0106C; dccAccession=wgEncodeEH000269; geoSampleAccession=GSM672834; labProtocolId=gen0106C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqGm12878CytosolPapPlusRawRep1.bigWig  76M  2009-10-29  dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=269; labExpId=crg-9; subId=1399; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-03; grant=Gingeras; lab=GIS; view=PlusRawSignal; type=bigWig; bioRep=gen0106C; dccAccession=wgEncodeEH000269; geoSampleAccession=GSM672834; labProtocolId=gen0106C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqGm12878CytosolPapRawDataRep1.csfasta.gz  690M  2009-10-29  dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=269; labExpId=crg-9; subId=2323; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-09-17; grant=Gingeras; lab=GIS; view=RawData; type=csfasta; bioRep=gen0106C; dccAccession=wgEncodeEH000269; geoSampleAccession=GSM672834; labProtocolId=gen0106C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqGm12878CytosolPapRawData2Rep1.csqual.gz  861M  2009-10-29  dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=269; labExpId=crg-9; subId=2323; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-09-17; grant=Gingeras; lab=GIS; view=RawData; type=csqual; bioRep=gen0106C; dccAccession=wgEncodeEH000269; geoSampleAccession=GSM672834; labProtocolId=gen0106C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqH1hescCellPapAlnRep1.bam.bai  4.5M  2009-10-29  dataType=RnaSeq; cell=H1-hESC; rnaExtract=longPolyA; localization=cell; replicate=1; expId=270; labExpId=crg-16; subId=1400; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-03; grant=Gingeras; lab=GIS; view=Alignments; type=bai; bioRep=gen0115WC; dccAccession=wgEncodeEH000270; geoSampleAccession=GSM672836; labProtocolId=gen0115WC+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqH1hescCellPapAlnRep1.bam  1.9G  2009-10-29  dataType=RnaSeq; cell=H1-hESC; rnaExtract=longPolyA; localization=cell; replicate=1; expId=270; labExpId=crg-16; subId=1400; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-03; grant=Gingeras; lab=GIS; view=Alignments; type=bam; bioRep=gen0115WC; dccAccession=wgEncodeEH000270; geoSampleAccession=GSM672836; labProtocolId=gen0115WC+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqH1hescCellPapMinusRawRep1.bigWig  255M  2009-10-29  dataType=RnaSeq; cell=H1-hESC; rnaExtract=longPolyA; localization=cell; replicate=1; expId=270; labExpId=crg-16; subId=1400; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-03; grant=Gingeras; lab=GIS; view=MinusRawSignal; type=bigWig; bioRep=gen0115WC; dccAccession=wgEncodeEH000270; geoSampleAccession=GSM672836; labProtocolId=gen0115WC+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqH1hescCellPapPlusRawRep1.bigWig  270M  2009-10-29  dataType=RnaSeq; cell=H1-hESC; rnaExtract=longPolyA; localization=cell; replicate=1; expId=270; labExpId=crg-16; subId=1400; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-03; grant=Gingeras; lab=GIS; view=PlusRawSignal; type=bigWig; bioRep=gen0115WC; dccAccession=wgEncodeEH000270; geoSampleAccession=GSM672836; labProtocolId=gen0115WC+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqH1hescCellPapRawData3Rep1.fastq.gz  2.1G  2009-10-29  dataType=RnaSeq; cell=H1-hESC; rnaExtract=longPolyA; localization=cell; replicate=1; expId=270; labExpId=crg-16; subId=2323; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-09-17; grant=Gingeras; lab=GIS; view=RawData; type=fastq; bioRep=gen0115WC; dccAccession=wgEncodeEH000270; geoSampleAccession=GSM672836; labProtocolId=gen0115WC+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapAlnRep1.bam.bai  3.7M  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=271; labExpId=crg-48; subId=1401; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-01; grant=Gingeras; lab=GIS; view=Alignments; type=bai; bioRep=gen0139C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672833; labProtocolId=gen0139C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapAlnRep1.bam  3.1G  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=271; labExpId=crg-48; subId=1401; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-01; grant=Gingeras; lab=GIS; view=Alignments; type=bam; bioRep=gen0139C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672833; labProtocolId=gen0139C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapMinusRawRep1.bigWig  150M  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=271; labExpId=crg-48; subId=1401; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-01; grant=Gingeras; lab=GIS; view=MinusRawSignal; type=bigWig; bioRep=gen0139C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672833; labProtocolId=gen0139C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapPlusRawRep1.bigWig  153M  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=271; labExpId=crg-48; subId=1401; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-01; grant=Gingeras; lab=GIS; view=PlusRawSignal; type=bigWig; bioRep=gen0139C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672833; labProtocolId=gen0139C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapRawData3Rep1.fastq.gz  2.3G  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=1; expId=271; labExpId=crg-48; subId=2323; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-09-17; grant=Gingeras; lab=GIS; view=RawData; type=fastq; bioRep=gen0139C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672833; labProtocolId=gen0139C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapAlnRep2.bam.bai  3.5M  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=2; expId=271; labExpId=crg-55; subId=1401; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-01; grant=Gingeras; lab=GIS; view=Alignments; type=bai; bioRep=gen0141C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672835; labProtocolId=gen0141C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapAlnRep2.bam  829M  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=2; expId=271; labExpId=crg-55; subId=1401; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-01; grant=Gingeras; lab=GIS; view=Alignments; type=bam; bioRep=gen0141C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672835; labProtocolId=gen0141C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapMinusRawRep2.bigWig  77M  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=2; expId=271; labExpId=crg-55; subId=1401; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-01; grant=Gingeras; lab=GIS; view=MinusRawSignal; type=bigWig; bioRep=gen0141C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672835; labProtocolId=gen0141C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapPlusRawRep2.bigWig  85M  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=2; expId=271; labExpId=crg-55; subId=1401; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-01; grant=Gingeras; lab=GIS; view=PlusRawSignal; type=bigWig; bioRep=gen0141C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672835; labProtocolId=gen0141C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapRawDataRep2.csfasta.gz  486M  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=2; expId=271; labExpId=crg-55; subId=2323; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-09-17; grant=Gingeras; lab=GIS; view=RawData; type=csfasta; bioRep=gen0141C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672835; labProtocolId=gen0141C+; origAssembly=hg18
      2010-07-29wgEncodeGisRnaSeqK562CytosolPapRawData2Rep2.csqual.gz  1.1G  2009-10-29  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cytosol; replicate=2; expId=271; labExpId=crg-55; subId=2323; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-09-17; grant=Gingeras; lab=GIS; view=RawData; type=csqual; bioRep=gen0141C; dccAccession=wgEncodeEH000271; geoSampleAccession=GSM672835; labProtocolId=gen0141C+; origAssembly=hg18
    22 files