[DIR] Parent Directory

This directory contains data generated by the Hubbard/Sanger lab as part of the ENCODE project. Further information is available in the Gencode Genes track description.

This track update contains data released by the Gencode group as Version 7. Information about this release is included in the track description.

Other materials:

  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
  • supplemental materials which has the raw data from GENCODE.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2012-02-01wgEncodeGencode2wayConsPseudoV7.gp.gz  182K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=2-way Pseudogene Annotation Set; type=genePred; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodeBasicV7.gp.gz  4.5M  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=Basic Gene Annotation Set; type=genePred; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodeCompV7.gp.gz  6.3M  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=Comprehensive Gene Annotation Set; type=genePred; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodeExonSupportV7.tab.gz  95M  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=Exon Support; type=tab; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodePdbV7.tab.gz  127K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=PDB entry mapping; type=tab; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodePolyaV7.gp.gz  990K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=PolyA Transcript Annotation Set; type=genePred; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodePseudoGeneV7.gp.gz  434K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=Pseudogene Annotation Set; type=genePred; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodePubMedV7.tab.gz  736K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=PubMed ID mapping; type=tab; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodeRefSeqV7.tab.gz  384K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=RefSeq mapping; type=tab; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodeGeneSourceV7.tab.gz  174K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=Source Lab; type=tab; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodeAttrsV7.tab.gz  3.0M  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=Transcript Attributes; type=tab; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodeTranscriptSourceV7.tab.gz  696K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=Transcript Source Lab; type=tab; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodeTranscriptSupportV7.tab.gz  694K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=Transcript Support; type=tab; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodeTagV7.tab.gz  366K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=Transcript Tags; type=tab; dccAccession=wgEncodeEH001881
      2012-02-01wgEncodeGencodeUniProtV7.tab.gz  845K  2011-05-01  dataType=Gencode; expId=1881; labExpId=V7; subId=4347; grant=Hubbard; lab=Sanger; labVersion=UniProt ID mapping; type=tab; dccAccession=wgEncodeEH001881
    15 files