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wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=AG04450; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001081; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3335; labExpId=LID20745; bioRep=017WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqAg04450CellShorttotalTapAlnRep1; type=bam; md5sum=037b138f43f920f809ad501447d1d3d8; size=1.1G
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wgEncodeCshlShortRnaSeqBjCellShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=BJ; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001079; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3294; geoSampleAccession=GSM897077; labExpId=LID20909; bioRep=037WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqBjCellShorttotalTapMinusRawRep1; type=bigWig; md5sum=48256f7699401a458862fb4070737029; size=2.0M
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wgEncodeCshlShortRnaSeqBjCellShorttotalTapPlusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=BJ; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001079; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3294; geoSampleAccession=GSM897077; labExpId=LID20909; bioRep=037WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqBjCellShorttotalTapPlusRawRep1; type=bigWig; md5sum=9b8fbd762726e01b7d8b9c6665331133; size=1.9M
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wgEncodeCshlShortRnaSeqBjCellShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=BJ; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001079; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-18; subId=5717; geoSampleAccession=GSM897077; labExpId=LID20909; bioRep=037WC; seqPlatform=Illumina_GA2x; type=pdf; md5sum=72901d5d6411427c566c57f653f75898; size=347K
wgEncodeCshlShortRnaSeqBjCellShorttotalTapProtocolRep2.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=BJ; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001079; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-18; subId=5685; geoSampleAccession=GSM897077; labExpId=LID20910; bioRep=038WC; seqPlatform=Illumina_GA2x; type=pdf; md5sum=90644f5245674b449c7df27b28c9350e; size=354K
wgEncodeCshlShortRnaSeqBjCellShorttotalTapRawDataRep1.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=BJ; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001079; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3294; geoSampleAccession=GSM897077; labExpId=LID20909; bioRep=037WC; seqPlatform=Illumina_GA2x; type=fastq; md5sum=ab3568167cb4ce3d28d77f7ceafb6d98; size=871M
wgEncodeCshlShortRnaSeqBjCellShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=BJ; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001079; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3293; geoSampleAccession=GSM897077; labExpId=LID20910; bioRep=038WC; seqPlatform=Illumina_GA2x; type=fastq; md5sum=5e9eb2745e344a3cde79f9fcdcf1bb3e; size=854M
wgEncodeCshlShortRnaSeqCellShortRawData.fastq.gz	objStatus=renamed - missing cell line in name, renamed to wgEncodeCshlShortRnaSeqProstateCellTotalRawData; project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=prostate; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Fall 2009 Freeze; dccAccession=wgEncodeEH000211; dateSubmitted=2009-09-23; dateUnrestricted=2010-06-23; subId=535; geoSampleAccession=GSM605626; type=fastq; md5sum=cc247f23a9a364e8a763b65e3819e1fe; size=1.2G
wgEncodeCshlShortRnaSeqGm12878CellShortAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2010-01-14; dateResubmitted=2010-06-14; dateUnrestricted=2010-10-14; subId=1403; geoSampleAccession=GSM605625; labExpId=crg-2; bioRep=gen0101WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878CellShortAln; type=bam; md5sum=03df08790fe81801c7e4fea90777a788; size=53M
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wgEncodeCshlShortRnaSeqGm12878CellShortMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2010-01-14; dateResubmitted=2010-06-14; dateUnrestricted=2010-10-14; subId=1403; geoSampleAccession=GSM605625; labExpId=crg-2; bioRep=gen0101WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878CellShortMinusRaw; type=bigWig; md5sum=d7c07abdb1583cec226fa9902f26bdb2; size=24M
wgEncodeCshlShortRnaSeqGm12878CellShortPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2010-01-14; dateResubmitted=2010-06-14; dateUnrestricted=2010-10-14; subId=1403; geoSampleAccession=GSM605625; labExpId=crg-2; bioRep=gen0101WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878CellShortPlusRaw; type=bigWig; md5sum=e5461d01f6fc6ee96199bc861f75c30b; size=24M
wgEncodeCshlShortRnaSeqGm12878CellShortRawData.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=GM12878; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2010-01-14; dateUnrestricted=2010-10-14; subId=1017; geoSampleAccession=GSM605625; labExpId=crg-2; bioRep=gen0101WC; labVersion=Produced by Hannon Lab; type=fastq; md5sum=91cc9e599518719f89ecf51edd360954; size=1.9G
wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3302; labExpId=LID20899; bioRep=003WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapAlnRep1; type=bam; md5sum=26935ba53a77022957bb761f98a7791c; size=1.3G
wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapAlnRep1.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3302; labExpId=LID20899; bioRep=003WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapAlnRep1; type=bai; md5sum=9fe72c813cbde82341860ce19aee4c4e; size=5.2M
wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3304; labExpId=LID20902; bioRep=004WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapAlnRep2; type=bam; md5sum=689d64234d0da419adb9f0471ce50950; size=1.4G
wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3304; labExpId=LID20902; bioRep=004WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapAlnRep2; type=bai; md5sum=a20e51205ec82a4aeb21527d48ed259f; size=5.2M
wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=GM12878; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4482; geoSampleAccession=GSM605625; labExpId=LID20899,LID20902; bioRep=003WC,004WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapContigs; type=bedRnaElements; md5sum=82317bda303c278337deaa46715bb166; size=584K
wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=GM12878; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4482; geoSampleAccession=GSM605625; labExpId=LID20899,LID20902; bioRep=003WC,004WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=ecb360155d1dcd894b8cefaa78652bf3; size=1.3M
wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000212; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3302; geoSampleAccession=GSM605625; labExpId=LID20899; bioRep=003WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CellShorttotalTapMinusRawRep1; type=bigWig; md5sum=24710829d03156539f323530e398e0a3; size=4.9M
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wgEncodeCshlShortRnaSeqGm12878CytosolShortAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1404; geoSampleAccession=GSM605627; labExpId=crg-4; bioRep=gen0108C; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShortAln; type=bam; md5sum=5290526e35e0d92d9659e230324d9699; size=28M
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wgEncodeCshlShortRnaSeqGm12878CytosolShortMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1404; geoSampleAccession=GSM605627; labExpId=crg-4; bioRep=gen0108C; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShortMinusRaw; type=bigWig; md5sum=32c9332abad1e6949d590e7f978fda74; size=8.8M
wgEncodeCshlShortRnaSeqGm12878CytosolShortPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1404; geoSampleAccession=GSM605627; labExpId=crg-4; bioRep=gen0108C; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShortPlusRaw; type=bigWig; md5sum=7debeac04170a03e3e9f72d21a121b9d; size=8.7M
wgEncodeCshlShortRnaSeqGm12878CytosolShortRawData.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Fall 2009 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2009-09-23; dateUnrestricted=2010-06-23; subId=535; geoSampleAccession=GSM605627; labExpId=crg-4; bioRep=gen0108C; labVersion=Produced by Hannon Lab; type=fastq; md5sum=91eb0b8e8e26d5b83cbd4af2d8312c46; size=1009M
wgEncodeCshlShortRnaSeqGm12878CytosolShortTransfrags.shortFrags.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Transfrags; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2009-09-23; dateResubmitted=2010-07-20; dateUnrestricted=2010-06-23; subId=1965; geoSampleAccession=GSM605627; labExpId=crg-4; bioRep=gen0108C; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShortTransfrags; type=shortFrags; md5sum=95feaeb4c61dfc1c76c97d961425138b; size=876K
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3305; labExpId=LID20901; bioRep=003C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapAlnRep1; type=bam; md5sum=32e18ca6acd794dbbb9ce8cc1f986f10; size=1.3G
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapAlnRep1.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3305; labExpId=LID20901; bioRep=003C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapAlnRep1; type=bai; md5sum=2d3d34079adf8051249e50d1c025ebe8; size=5.0M
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3307; labExpId=LID20904; bioRep=004C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapAlnRep2; type=bam; md5sum=e41f8dd0aaf9c019f6f1f055c8ea9952; size=1.8G
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3307; labExpId=LID20904; bioRep=004C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapAlnRep2; type=bai; md5sum=f92da2727205c0a9135ae50a1953be59; size=5.2M
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4489; geoSampleAccession=GSM605627; labExpId=LID20901,LID20904; bioRep=003C,004C; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapContigs; type=bedRnaElements; md5sum=8767b294072074498488045c881058ce; size=438K
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4489; geoSampleAccession=GSM605627; labExpId=LID20901,LID20904; bioRep=003C,004C; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=b3e4bf177ec4d02b548464a4f2e3d45f; size=1.2M
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3305; geoSampleAccession=GSM605627; labExpId=LID20901; bioRep=003C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapMinusRawRep1; type=bigWig; md5sum=1b692145fbefb07ff3d2265dea52cd7b; size=3.9M
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapMinusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3307; geoSampleAccession=GSM605627; labExpId=LID20904; bioRep=004C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapMinusRawRep2; type=bigWig; md5sum=9bd53d6a6b7fd37604a8161d6ee013a8; size=4.9M
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapPlusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3305; geoSampleAccession=GSM605627; labExpId=LID20901; bioRep=003C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapPlusRawRep1; type=bigWig; md5sum=8af9e35cc9dc0c90df759ab5b64ecc0a; size=3.9M
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapPlusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3307; geoSampleAccession=GSM605627; labExpId=LID20904; bioRep=004C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapPlusRawRep2; type=bigWig; md5sum=34b5b31fccea887efdc370650f481b0f; size=4.9M
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-18; subId=5682; geoSampleAccession=GSM605627; labExpId=LID20901; bioRep=003C; seqPlatform=Illumina_GA2x; type=pdf; md5sum=815de8d674105a09ee4b126db350d3b5; size=304K
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapProtocolRep2.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-18; subId=5695; geoSampleAccession=GSM605627; labExpId=LID20904; bioRep=004C; seqPlatform=Illumina_GA2x; type=pdf; md5sum=c153d5a3c0fa9b56e17f1065d5cd3da7; size=315K
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapRawDataRep1.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3305; geoSampleAccession=GSM605627; labExpId=LID20901; bioRep=003C; seqPlatform=Illumina_GA2x; type=fastq; md5sum=53d0fa4292dbe046e2c471ea4261f94e; size=770M
wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=GM12878; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000203; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3307; geoSampleAccession=GSM605627; labExpId=LID20904; bioRep=004C; seqPlatform=Illumina_GA2x; type=fastq; md5sum=bff82a306cc96cb35dd764cd7f1b3b09; size=1.1G
wgEncodeCshlShortRnaSeqGm12878NucleusShortAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1402; geoSampleAccession=GSM605633; labExpId=crg-6; bioRep=gen0112N; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShortAln; type=bam; md5sum=d710bdf4ab5e03a5309e1783fb75c0df; size=51M
wgEncodeCshlShortRnaSeqGm12878NucleusShortAln.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1402; geoSampleAccession=GSM605633; labExpId=crg-6; bioRep=gen0112N; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShortAln; type=bai; md5sum=94e066bc51ed7d73499ad8c63405557a; size=3.0M
wgEncodeCshlShortRnaSeqGm12878NucleusShortMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1402; geoSampleAccession=GSM605633; labExpId=crg-6; bioRep=gen0112N; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShortMinusRaw; type=bigWig; md5sum=6663326e3102cf17b0d9ba4b08084512; size=8.2M
wgEncodeCshlShortRnaSeqGm12878NucleusShortPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1402; geoSampleAccession=GSM605633; labExpId=crg-6; bioRep=gen0112N; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShortPlusRaw; type=bigWig; md5sum=2549445d3289d3666cf5f4c0adafd79c; size=8.2M
wgEncodeCshlShortRnaSeqGm12878NucleusShortRawData.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Fall 2009 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2009-09-23; dateUnrestricted=2010-06-23; subId=535; geoSampleAccession=GSM605633; labExpId=crg-6; bioRep=gen0112N; labVersion=Produced by Hannon Lab; type=fastq; md5sum=dc95979eb6e3937a47511cd7cb9b035a; size=1.3G
wgEncodeCshlShortRnaSeqGm12878NucleusShortTransfrags.shortFrags.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Transfrags; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2009-09-23; dateResubmitted=2010-07-20; dateUnrestricted=2010-06-23; subId=1965; geoSampleAccession=GSM605633; labExpId=crg-6; bioRep=gen0112N; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShortTransfrags; type=shortFrags; md5sum=35df1ca77cff34683b9baa6b2426b182; size=1.2M
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3308; labExpId=LID20900; bioRep=003N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapAlnRep1; type=bam; md5sum=302ca6e4b1ea53fbe1d3e68cf0a59670; size=841M
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapAlnRep1.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3308; labExpId=LID20900; bioRep=003N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapAlnRep1; type=bai; md5sum=eb0df8cc04baf79ed269e99a4d9bc972; size=5.1M
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3338; labExpId=LID20903; bioRep=004N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapAlnRep2; type=bam; md5sum=23650e6de625f0de1148522020e302c9; size=1.2G
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3338; labExpId=LID20903; bioRep=004N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapAlnRep2; type=bai; md5sum=68df2dc58a3e36daf7ea15dce9fd97f9; size=4.8M
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4477; geoSampleAccession=GSM605633; labExpId=LID20900,LID20903; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapContigs; type=bedRnaElements; md5sum=5a0210832fb59ea929b588eefb276672; size=721K
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4477; geoSampleAccession=GSM605633; labExpId=LID20900,LID20903; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=1f9ac70bbb56b4836f727535934e1975; size=1.6M
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3308; geoSampleAccession=GSM605633; labExpId=LID20900; bioRep=003N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapMinusRawRep1; type=bigWig; md5sum=ca6b72d62e5f9dfa415ce1f537fa7dd3; size=4.4M
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapMinusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3338; geoSampleAccession=GSM605633; labExpId=LID20903; bioRep=004N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapMinusRawRep2; type=bigWig; md5sum=e74bcdc8965d96a1de75625692083d13; size=3.9M
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapPlusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3308; geoSampleAccession=GSM605633; labExpId=LID20900; bioRep=003N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapPlusRawRep1; type=bigWig; md5sum=f7a6b19f4d7f77116c43692c6a16ade7; size=4.4M
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapPlusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3338; geoSampleAccession=GSM605633; labExpId=LID20903; bioRep=004N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapPlusRawRep2; type=bigWig; md5sum=471ecceaac3018f1bd7cfabe77837878; size=3.8M
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-18; subId=5709; geoSampleAccession=GSM605633; labExpId=LID20900; bioRep=003N; seqPlatform=Illumina_GA2x; type=pdf; md5sum=9a7631dfa386f86a5ac443bfbfa138b8; size=308K
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapProtocolRep2.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5696; geoSampleAccession=GSM605633; labExpId=LID20903; bioRep=004N; seqPlatform=Illumina_GA2x; type=pdf; md5sum=7e64919241ec856776a45951e37ca1f7; size=338K
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapRawDataRep1.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3308; geoSampleAccession=GSM605633; labExpId=LID20900; bioRep=003N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=bc98249bb02a5e7e6fe6c6a2a608b197; size=853M
wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=GM12878; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000204; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3338; geoSampleAccession=GSM605633; labExpId=LID20903; bioRep=004N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=1645e1c4b3ae9c3647b94d8e0d77efba; size=1.1G
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3340; labExpId=LID20905; bioRep=005WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapAlnRep1; type=bam; md5sum=f2599972fca418b1ce0ab702f38aebb0; size=815M
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapAlnRep1.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3340; labExpId=LID20905; bioRep=005WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapAlnRep1; type=bai; md5sum=20b8d76b4be3fe2735e77c3dd0469b35; size=5.4M
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3341; labExpId=LID20906; bioRep=006WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapAlnRep2; type=bam; md5sum=cc23a429bfe42213ae82c221514457b8; size=795M
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3341; labExpId=LID20906; bioRep=006WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapAlnRep2; type=bai; md5sum=192a92b922959e8f9ddfe49c436aec7a; size=5.5M
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4485; geoSampleAccession=GSM897073; labExpId=LID20905,LID20906; bioRep=005WC,006WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapContigs; type=bedRnaElements; md5sum=58e33cc66e8ff9414f92fdaf58781885; size=647K
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4485; geoSampleAccession=GSM897073; labExpId=LID20905,LID20906; bioRep=005WC,006WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=b7915f6c1f4f1832bbc23715c888d01f; size=2.1M
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3340; geoSampleAccession=GSM897073; labExpId=LID20905; bioRep=005WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapMinusRawRep1; type=bigWig; md5sum=381ec3bdde95cf32cc2ef48dc2fe158d; size=5.5M
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapMinusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3341; geoSampleAccession=GSM897073; labExpId=LID20906; bioRep=006WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapMinusRawRep2; type=bigWig; md5sum=fd9ee3f60e44bffb35696496e7234bf8; size=5.8M
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapPlusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3340; geoSampleAccession=GSM897073; labExpId=LID20905; bioRep=005WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapPlusRawRep1; type=bigWig; md5sum=876438b671af7d900f9d6c5351fdb7af; size=5.5M
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapPlusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3341; geoSampleAccession=GSM897073; labExpId=LID20906; bioRep=006WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapPlusRawRep2; type=bigWig; md5sum=f1761d3d65f33865bb86849a81cc5594; size=5.8M
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5714; geoSampleAccession=GSM897073; labExpId=LID20905; bioRep=005WC; seqPlatform=Illumina_GA2x; type=pdf; md5sum=b6575c80c5f694912261bedb10a1ec21; size=312K
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapProtocolRep2.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5704; geoSampleAccession=GSM897073; labExpId=LID20906; bioRep=006WC; seqPlatform=Illumina_GA2x; type=pdf; md5sum=97f2034c4c3d57c7abe4ce72fba75651; size=308K
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapRawDataRep1.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3340; geoSampleAccession=GSM897073; labExpId=LID20905; bioRep=005WC; seqPlatform=Illumina_GA2x; type=fastq; md5sum=1dce5cd6d0e7f7db15d2a24c7b302773; size=759M
wgEncodeCshlShortRnaSeqH1hescCellShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=H1-hESC; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001082; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3341; geoSampleAccession=GSM897073; labExpId=LID20906; bioRep=006WC; seqPlatform=Illumina_GA2x; type=fastq; md5sum=6a25b6692785467ed6d4f07b650c981d; size=731M
wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001083; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3342; labExpId=LID20908; bioRep=006C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapAlnRep2; type=bam; md5sum=fd572bffc038fe6b7943623867cb8250; size=563M
wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001083; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3342; labExpId=LID20908; bioRep=006C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapAlnRep2; type=bai; md5sum=32343ad3ad52bfa64847cd11f5441739; size=5.1M
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wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=H1-hESC; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001083; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4495; geoSampleAccession=GSM897072; labExpId=LID20908; bioRep=006C; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=3f17c0c427a08e4308e314655d037ccb; size=1.1M
wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapMinusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=H1-hESC; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001083; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3342; geoSampleAccession=GSM897072; labExpId=LID20908; bioRep=006C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapMinusRawRep2; type=bigWig; md5sum=05f4e9214c02870fa6f7b0e807cbaffd; size=3.9M
wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapPlusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=H1-hESC; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001083; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3342; geoSampleAccession=GSM897072; labExpId=LID20908; bioRep=006C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapPlusRawRep2; type=bigWig; md5sum=dcde810070f32fbdaf722c425cd2e7d5; size=3.9M
wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=H1-hESC; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001083; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3342; geoSampleAccession=GSM897072; labExpId=LID20908; bioRep=006C; seqPlatform=Illumina_GA2x; type=fastq; md5sum=9c717d33ac5a9ff3b954d35dd914cf29; size=453M
wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001084; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3343; labExpId=LID20907; bioRep=006N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapAlnRep2; type=bam; md5sum=773fae1c64130b176774ed9f69aef8e6; size=843M
wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001084; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3343; labExpId=LID20907; bioRep=006N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapAlnRep2; type=bai; md5sum=4c42e9f1a7adeb5cac1766a85e782698; size=4.3M
wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapContigsV2.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=H1-hESC; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; submittedDataVersion=V2 - Changed . to -1 to represent NULL; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001084; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4496; geoSampleAccession=GSM897071; labExpId=LID20907; bioRep=006N; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapContigsV2; type=bedRnaElements; md5sum=1fc71d7535e93b09b16d8ed675ebc2f0; size=1.7M
wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=H1-hESC; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001084; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4496; geoSampleAccession=GSM897071; labExpId=LID20907; bioRep=006N; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=6fd7e6b3c821057ec1f2c159f6eb845f; size=1009K
wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapMinusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=H1-hESC; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001084; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3343; geoSampleAccession=GSM897071; labExpId=LID20907; bioRep=006N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapMinusRawRep2; type=bigWig; md5sum=34b0ee01cf0202a92ca5c8900898f79b; size=1.9M
wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapPlusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=H1-hESC; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001084; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3343; geoSampleAccession=GSM897071; labExpId=LID20907; bioRep=006N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapPlusRawRep2; type=bigWig; md5sum=813df911b2f3c04b72beed6f888b7749; size=1.9M
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wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=H1-hESC; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001084; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3343; geoSampleAccession=GSM897071; labExpId=LID20907; bioRep=006N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=45ac3325433a21ac411e8dcf0f5dbbd9; size=912M
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3344; labExpId=LID21143; bioRep=011WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapAlnRep1; type=bam; md5sum=bb601ea89be697303c2148860ddd9ec1; size=1.1G
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapAlnRep1.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3344; labExpId=LID21143; bioRep=011WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapAlnRep1; type=bai; md5sum=d65f50a8660a9665df78bcb1f3d016fe; size=5.3M
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3345; labExpId=LID21146; bioRep=012WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapAlnRep2; type=bam; md5sum=1027f7e402f98a0ac1dae6125ce2a445; size=1.1G
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3345; labExpId=LID21146; bioRep=012WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapAlnRep2; type=bai; md5sum=0ffbdd41a73dd17f7672ccccd428f770; size=5.4M
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4486; geoSampleAccession=GSM897079; labExpId=LID21143,LID21146; bioRep=011WC,012WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapContigs; type=bedRnaElements; md5sum=fa92606bb88a35030ad5c7d760232e65; size=702K
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4486; geoSampleAccession=GSM897079; labExpId=LID21143,LID21146; bioRep=011WC,012WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=dec20cad92d74f7c44ed4d6ea4ba80f3; size=2.0M
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3344; geoSampleAccession=GSM897079; labExpId=LID21143; bioRep=011WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapMinusRawRep1; type=bigWig; md5sum=8260224488a6271a85b6498e185c0bc3; size=5.4M
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapMinusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3345; geoSampleAccession=GSM897079; labExpId=LID21146; bioRep=012WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapMinusRawRep2; type=bigWig; md5sum=e5f7015c0722d153965d38ee1063a1ed; size=6.2M
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapPlusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3344; geoSampleAccession=GSM897079; labExpId=LID21143; bioRep=011WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapPlusRawRep1; type=bigWig; md5sum=4280926f2f48b85d793af36bcc26c494; size=5.4M
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wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5699; geoSampleAccession=GSM897079; labExpId=LID21143; bioRep=011WC; seqPlatform=Illumina_GA2x; type=pdf; md5sum=898e443771f88df2800e63a93c5cfb0a; size=296K
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapProtocolRep2.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5710; geoSampleAccession=GSM897079; labExpId=LID21146; bioRep=012WC; seqPlatform=Illumina_GA2x; type=pdf; md5sum=79a434aa03ef698ee661aebfb5a45a1b; size=298K
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapRawDataRep1.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3344; geoSampleAccession=GSM897079; labExpId=LID21143; bioRep=011WC; seqPlatform=Illumina_GA2x; type=fastq; md5sum=4b95560edc2f405c0d40021d9558ded4; size=931M
wgEncodeCshlShortRnaSeqHelas3CellShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=HeLa-S3; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001089; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3345; geoSampleAccession=GSM897079; labExpId=LID21146; bioRep=012WC; seqPlatform=Illumina_GA2x; type=fastq; md5sum=2250920043dafed0e4513e23e1c76be7; size=877M
wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001087; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3346; labExpId=LID21145; bioRep=011C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapAlnRep1; type=bam; md5sum=10a1ec54fb3bdf40a29a4163cc5e9995; size=1.1G
wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapAlnRep1.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001087; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3346; labExpId=LID21145; bioRep=011C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapAlnRep1; type=bai; md5sum=6b7c0a42ff436233dbf9eb254acf24e7; size=5.3M
wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001087; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3347; labExpId=LID21148; bioRep=012C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapAlnRep2; type=bam; md5sum=7eddb273e507a3a79df0173ff42e05f2; size=1.3G
wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001087; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3347; labExpId=LID21148; bioRep=012C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapAlnRep2; type=bai; md5sum=14548ff52156047ee27635a9af5b9af5; size=5.4M
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wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HeLa-S3; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001087; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3346; geoSampleAccession=GSM897069; labExpId=LID21145; bioRep=011C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapMinusRawRep1; type=bigWig; md5sum=4293962ed61b5edb5c726b6ef9975c58; size=5.4M
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wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapPlusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HeLa-S3; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001087; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3346; geoSampleAccession=GSM897069; labExpId=LID21145; bioRep=011C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapPlusRawRep1; type=bigWig; md5sum=89987d9f0be770f7223b90256d7bd340; size=5.4M
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wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=HeLa-S3; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001087; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5680; geoSampleAccession=GSM897069; labExpId=LID21145; bioRep=011C; seqPlatform=Illumina_GA2x; type=pdf; md5sum=97a388e1ce60be1945a7abae630c88e3; size=314K
wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapProtocolRep2.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=HeLa-S3; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001087; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5693; geoSampleAccession=GSM897069; labExpId=LID21148; bioRep=012C; seqPlatform=Illumina_GA2x; type=pdf; md5sum=ba8502e48be3c7823bc327084864505b; size=315K
wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapRawDataRep1.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=HeLa-S3; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001087; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3346; geoSampleAccession=GSM897069; labExpId=LID21145; bioRep=011C; seqPlatform=Illumina_GA2x; type=fastq; md5sum=71ab9acadfe6ae1cc5cb64ebcf9e965c; size=924M
wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=HeLa-S3; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001087; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3347; geoSampleAccession=GSM897069; labExpId=LID21148; bioRep=012C; seqPlatform=Illumina_GA2x; type=fastq; md5sum=3d1698c7c3f0671c0dc81ed639cdae29; size=935M
wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001088; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3348; labExpId=LID21144; bioRep=011N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapAlnRep1; type=bam; md5sum=edd0a9021247c896f5346bbb3f707c33; size=682M
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wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001088; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3349; labExpId=LID21147; bioRep=012N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapAlnRep2; type=bam; md5sum=bc3384ce4c6994a844333c3f5a712d8c; size=774M
wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001088; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3349; labExpId=LID21147; bioRep=012N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapAlnRep2; type=bai; md5sum=dc00f5567cf02840987016f5fdd9e9cf; size=4.8M
wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=HeLa-S3; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001088; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4470; geoSampleAccession=GSM897080; labExpId=LID21144,LID21147; bioRep=011N,012N; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapContigs; type=bedRnaElements; md5sum=60e84fbd8031bd215e7d8103b2197dec; size=279K
wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=HeLa-S3; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001088; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4470; geoSampleAccession=GSM897080; labExpId=LID21144,LID21147; bioRep=011N,012N; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=d801e25952c2bbaa88f79a6f2ee95b6d; size=990K
wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HeLa-S3; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001088; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3348; geoSampleAccession=GSM897080; labExpId=LID21144; bioRep=011N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapMinusRawRep1; type=bigWig; md5sum=87fbaea5961f1983d8b01aab3b2d96ab; size=1.4M
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wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=HeLa-S3; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001088; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5706; geoSampleAccession=GSM897080; labExpId=LID21144; bioRep=011N; seqPlatform=Illumina_GA2x; type=pdf; md5sum=bcf25fe06918736cf99458fd6ce5e03d; size=349K
wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapProtocolRep2.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=HeLa-S3; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001088; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5700; geoSampleAccession=GSM897080; labExpId=LID21147; bioRep=012N; seqPlatform=Illumina_GA2x; type=pdf; md5sum=4869b33064efb54ae8d3c9b6aa90aba4; size=349K
wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalTapRawDataRep1.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=HeLa-S3; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001088; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3348; geoSampleAccession=GSM897080; labExpId=LID21144; bioRep=011N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=5b2587944b679f1be4f9400e5a79c240; size=717M
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wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HepG2; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001741; dateSubmitted=2011-05-11; dateUnrestricted=2012-02-11; subId=4060; labExpId=LID44460; bioRep=013WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapAlnRep1; type=bam; md5sum=2c351dc6f0523f40fc7e86dba023ba48; size=856M
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wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HepG2; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001741; dateSubmitted=2011-05-11; dateUnrestricted=2012-02-11; subId=4060; geoSampleAccession=GSM897084; labExpId=LID44460; bioRep=013WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHepg2CellShorttotalTapMinusRawRep1; type=bigWig; md5sum=a5cb40841ef1432aa986919792cab224; size=1.6M
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wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=HepG2; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001743; dateSubmitted=2012-02-07; dateUnrestricted=2012-11-07; subId=4061; labExpId=LID44464; bioRep=013C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHepg2CytosolShorttotalTapAlnRep1; type=bam; md5sum=69c21e124de6a69cfb235e6d5aeac352; size=755M
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wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=HepG2; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001742; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4480; geoSampleAccession=GSM897085; labExpId=LID44462,LID44463; bioRep=013N,014N; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapContigs; type=bedRnaElements; md5sum=f1243aee2df502cd7ec8b177ba94e5c0; size=206K
wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=HepG2; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001742; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4480; geoSampleAccession=GSM897085; labExpId=LID44462,LID44463; bioRep=013N,014N; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=9d4e5af3ce150589f057ec364acd3a7f; size=612K
wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HepG2; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001742; dateSubmitted=2011-05-13; dateUnrestricted=2012-02-13; subId=4112; geoSampleAccession=GSM897085; labExpId=LID44462; bioRep=013N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapMinusRawRep1; type=bigWig; md5sum=87689296b73fc06cd51a39ed3e13fb94; size=1.2M
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wgEncodeCshlShortRnaSeqHepg2NucleusShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=HepG2; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001742; dateSubmitted=2011-05-13; dateUnrestricted=2012-02-13; subId=4113; geoSampleAccession=GSM897085; labExpId=LID44463; bioRep=014N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=ba8f88267ed0a03db07ffcd1b8f7d68c; size=891M
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wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapProtocolRep4.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=HUVEC; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001080; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-18; subId=5694; geoSampleAccession=GSM897075; labExpId=LID21058; bioRep=030N; seqPlatform=Illumina_GA2x; type=pdf; md5sum=64068fd361ad8d0d2169f3b43dbed7bb; size=326K
wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapRawDataRep3.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=HUVEC; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001080; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3362; geoSampleAccession=GSM897075; labExpId=LID21056; bioRep=029N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=0d6d12b60fc88da597f8f014403b4305; size=942M
wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalTapRawDataRep4.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=HUVEC; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001080; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3295; geoSampleAccession=GSM897075; labExpId=LID21058; bioRep=030N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=8b41b3ed8cc82e0b580024787b734b5b; size=748M
wgEncodeCshlShortRnaSeqK562CellShortAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2010-01-14; dateResubmitted=2010-06-14; dateUnrestricted=2010-10-14; subId=1409; geoSampleAccession=GSM605630; labExpId=crg-31; bioRep=gen0130WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562CellShortAln; type=bam; md5sum=b8b6d993a31cda4827f9cd23a9a4d618; size=41M
wgEncodeCshlShortRnaSeqK562CellShortAln.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2010-01-14; dateResubmitted=2010-06-14; dateUnrestricted=2010-10-14; subId=1409; geoSampleAccession=GSM605630; labExpId=crg-31; bioRep=gen0130WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562CellShortAln; type=bai; md5sum=2bd965ce0f4530b9f8871e0bb5527302; size=4.4M
wgEncodeCshlShortRnaSeqK562CellShortMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2010-01-14; dateResubmitted=2010-06-14; dateUnrestricted=2010-10-14; subId=1409; geoSampleAccession=GSM605630; labExpId=crg-31; bioRep=gen0130WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562CellShortMinusRaw; type=bigWig; md5sum=73ed2cc27b31565e7d403faa3ebd8231; size=17M
wgEncodeCshlShortRnaSeqK562CellShortPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2010-01-14; dateResubmitted=2010-06-14; dateUnrestricted=2010-10-14; subId=1409; geoSampleAccession=GSM605630; labExpId=crg-31; bioRep=gen0130WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562CellShortPlusRaw; type=bigWig; md5sum=f7c0d7ad646646320eaccc2e050b9123; size=17M
wgEncodeCshlShortRnaSeqK562CellShortRawData.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2010-01-14; dateUnrestricted=2010-10-14; subId=1000; geoSampleAccession=GSM605630; labExpId=crg-31; bioRep=gen0130WC; labVersion=Produced by Hannon Lab; type=fastq; md5sum=27bd048de5ac571a226bbd3d83e529ff; size=1.9G
wgEncodeCshlShortRnaSeqK562CellShortTransfrags.shortFrags.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Transfrags; cell=K562; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2010-01-14; dateResubmitted=2010-06-14; dateUnrestricted=2010-10-14; subId=1965; geoSampleAccession=GSM605630; labExpId=crg-31; bioRep=gen0130WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562CellShortTransfrags; type=shortFrags; md5sum=4c1639afd2d6bfc017fb2acee07b60bf; size=1.9M
wgEncodeCshlShortRnaSeqK562CellShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3296; labExpId=LID10567; bioRep=001WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CellShorttotalTapAlnRep1; type=bam; md5sum=d43bf7295915a91092026ad2c0a8c2d2; size=571M
wgEncodeCshlShortRnaSeqK562CellShorttotalTapAlnRep1.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3296; labExpId=LID10567; bioRep=001WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CellShorttotalTapAlnRep1; type=bai; md5sum=90d2326e515e8e0b882c4bb39b295ecc; size=5.1M
wgEncodeCshlShortRnaSeqK562CellShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3363; labExpId=LID10568; bioRep=002WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CellShorttotalTapAlnRep2; type=bam; md5sum=5d4da451d8fc41bf2c806919caa4815d; size=996M
wgEncodeCshlShortRnaSeqK562CellShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3363; labExpId=LID10568; bioRep=002WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CellShorttotalTapAlnRep2; type=bai; md5sum=9d5d82bc2a78122abef85683d433c199; size=5.2M
wgEncodeCshlShortRnaSeqK562CellShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4468; geoSampleAccession=GSM605630; labExpId=LID10567,LID10568; bioRep=001WC,002WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CellShorttotalTapContigs; type=bedRnaElements; md5sum=6b0e3670644af6daca8f6c2e57e336c8; size=357K
wgEncodeCshlShortRnaSeqK562CellShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4468; geoSampleAccession=GSM605630; labExpId=LID10567,LID10568; bioRep=001WC,002WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=773dcf0d4702edfb17f2923a9a4afa33; size=1.2M
wgEncodeCshlShortRnaSeqK562CellShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3296; geoSampleAccession=GSM605630; labExpId=LID10567; bioRep=001WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CellShorttotalTapMinusRawRep1; type=bigWig; md5sum=18de869c0d45d10cf2be39b5736874d1; size=4.2M
wgEncodeCshlShortRnaSeqK562CellShorttotalTapMinusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3363; geoSampleAccession=GSM605630; labExpId=LID10568; bioRep=002WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CellShorttotalTapMinusRawRep2; type=bigWig; md5sum=7ac3602b798a6d75ae6d9d0c8769a58b; size=4.4M
wgEncodeCshlShortRnaSeqK562CellShorttotalTapPlusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3296; geoSampleAccession=GSM605630; labExpId=LID10567; bioRep=001WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CellShorttotalTapPlusRawRep1; type=bigWig; md5sum=f27465fd0c8028c871e1fac627391a7c; size=4.2M
wgEncodeCshlShortRnaSeqK562CellShorttotalTapPlusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3363; geoSampleAccession=GSM605630; labExpId=LID10568; bioRep=002WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CellShorttotalTapPlusRawRep2; type=bigWig; md5sum=db0c5a6c5f60bc3125c55fa7bae88a13; size=4.3M
wgEncodeCshlShortRnaSeqK562CellShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=K562; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000213; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-18; subId=5705; geoSampleAccession=GSM605630; labExpId=LID10567; bioRep=001WC; seqPlatform=Illumina_GA2x; type=pdf; md5sum=7c62b99d1f374488238f3705f8103f18; size=276K
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wgEncodeCshlShortRnaSeqK562ChromatinShortAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=chromatin; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1405; geoSampleAccession=GSM605632; labExpId=crg-32; bioRep=gen0133CH; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShortAln; type=bam; md5sum=99a96758feefaa37e4810bcfb268eaf8; size=190M
wgEncodeCshlShortRnaSeqK562ChromatinShortAln.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=chromatin; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1405; geoSampleAccession=GSM605632; labExpId=crg-32; bioRep=gen0133CH; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShortAln; type=bai; md5sum=e9d6d908381a831eefa0948ebfd53c8a; size=5.4M
wgEncodeCshlShortRnaSeqK562ChromatinShortMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=chromatin; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1405; geoSampleAccession=GSM605632; labExpId=crg-32; bioRep=gen0133CH; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShortMinusRaw; type=bigWig; md5sum=7ee072c90986f00e2e9b9eafdfffb9dc; size=174M
wgEncodeCshlShortRnaSeqK562ChromatinShortPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=chromatin; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1405; geoSampleAccession=GSM605632; labExpId=crg-32; bioRep=gen0133CH; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShortPlusRaw; type=bigWig; md5sum=069a44a560ff4a5a6c80ba22c6062f28; size=176M
wgEncodeCshlShortRnaSeqK562ChromatinShortRawData.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=chromatin; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Fall 2009 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2009-09-23; dateUnrestricted=2010-06-23; subId=535; geoSampleAccession=GSM605632; labExpId=crg-32; bioRep=gen0133CH; labVersion=Produced by Hannon Lab; type=fastq; md5sum=2b37ae3eaaf4352318fdc75e3fef3f70; size=1.7G
wgEncodeCshlShortRnaSeqK562ChromatinShortTransfrags.shortFrags.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Transfrags; cell=K562; localization=chromatin; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2009-09-23; dateResubmitted=2010-07-20; dateUnrestricted=2010-06-23; subId=1965; geoSampleAccession=GSM605632; labExpId=crg-32; bioRep=gen0133CH; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShortTransfrags; type=shortFrags; md5sum=b10a237146847867ff5794dd5ba1fa65; size=44M
wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapAlnRep3.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=chromatin; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3364; labExpId=LID8930; bioRep=025CH; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapAlnRep3; type=bam; md5sum=44588996b7c1830a145ea17d8e3a52d1; size=1.2G
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wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapAlnRep4.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=chromatin; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3365; labExpId=LID18560; bioRep=026CH; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapAlnRep4; type=bai; md5sum=23ada0b4fc26df82da7abe7be17b3f6f; size=5.2M
wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=K562; localization=chromatin; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4476; geoSampleAccession=GSM605632; labExpId=LID8930,LID18560; bioRep=025CH,026CH; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapContigs; type=bedRnaElements; md5sum=fc52c70a1136cf55987080e026468551; size=2.9M
wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=K562; localization=chromatin; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4476; geoSampleAccession=GSM605632; labExpId=LID8930,LID18560; bioRep=025CH,026CH; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=3b56c3b4f10c128458c0bda30438597f; size=2.9M
wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapMinusRawRep3.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=chromatin; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3364; geoSampleAccession=GSM605632; labExpId=LID8930; bioRep=025CH; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapMinusRawRep3; type=bigWig; md5sum=8cfc54d326127c6e517d67231c6803a2; size=14M
wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapMinusRawRep4.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=chromatin; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3365; geoSampleAccession=GSM605632; labExpId=LID18560; bioRep=026CH; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapMinusRawRep4; type=bigWig; md5sum=37de1632c73a3d657e1ab5838e50fa09; size=10M
wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapPlusRawRep3.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=chromatin; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3364; geoSampleAccession=GSM605632; labExpId=LID8930; bioRep=025CH; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapPlusRawRep3; type=bigWig; md5sum=4bac393e86441779fcfd6445f57a113f; size=14M
wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapPlusRawRep4.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=chromatin; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3365; geoSampleAccession=GSM605632; labExpId=LID18560; bioRep=026CH; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapPlusRawRep4; type=bigWig; md5sum=57b1b816a606f3435f415938d4340b6a; size=11M
wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapRawDataRep3.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=chromatin; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3364; geoSampleAccession=GSM605632; labExpId=LID8930; bioRep=025CH; seqPlatform=Illumina_GA2x; type=fastq; md5sum=9b470a4c3577bd40a3afed33d5fbb089; size=971M
wgEncodeCshlShortRnaSeqK562ChromatinShorttotalTapRawDataRep4.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=chromatin; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000205; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3365; geoSampleAccession=GSM605632; labExpId=LID18560; bioRep=026CH; seqPlatform=Illumina_GA2x; type=fastq; md5sum=333136c9d2e699973dc704ee59e5eebc; size=787M
wgEncodeCshlShortRnaSeqK562CytosolShortAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1406; geoSampleAccession=GSM605629; labExpId=crg-36; bioRep=gen0142C; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562CytosolShortAln; type=bam; md5sum=0cc50ede720498592566740908ac669f; size=63M
wgEncodeCshlShortRnaSeqK562CytosolShortAln.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1406; geoSampleAccession=GSM605629; labExpId=crg-36; bioRep=gen0142C; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562CytosolShortAln; type=bai; md5sum=9ca3a421bd96e0d077fc14e54273c4b1; size=4.8M
wgEncodeCshlShortRnaSeqK562CytosolShortMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1406; geoSampleAccession=GSM605629; labExpId=crg-36; bioRep=gen0142C; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562CytosolShortMinusRaw; type=bigWig; md5sum=5cbb3aedfb442f3dd1bc3410dadfd518; size=22M
wgEncodeCshlShortRnaSeqK562CytosolShortPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1406; geoSampleAccession=GSM605629; labExpId=crg-36; bioRep=gen0142C; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562CytosolShortPlusRaw; type=bigWig; md5sum=3b0808e187cc32007d31b25ea91cece1; size=22M
wgEncodeCshlShortRnaSeqK562CytosolShortRawData.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Fall 2009 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2009-09-23; dateUnrestricted=2010-06-23; subId=535; geoSampleAccession=GSM605629; labExpId=crg-36; bioRep=gen0142C; labVersion=Produced by Hannon Lab; type=fastq; md5sum=e41db398bcbdb1abed3230b37ed2c195; size=905M
wgEncodeCshlShortRnaSeqK562CytosolShortTransfrags.shortFrags.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Transfrags; cell=K562; localization=cytosol; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2009-09-23; dateResubmitted=2010-07-20; dateUnrestricted=2010-06-23; subId=1965; geoSampleAccession=GSM605629; labExpId=crg-36; bioRep=gen0142C; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562CytosolShortTransfrags; type=shortFrags; md5sum=ec554ecc914e06e8ed784472cc7f5565; size=1.6M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3297; labExpId=LID10572; bioRep=001C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapAlnRep1; type=bam; md5sum=45fedb7b863fab34cc9a1864eefe58d0; size=862M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapAlnRep1.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3297; labExpId=LID10572; bioRep=001C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapAlnRep1; type=bai; md5sum=d8e7a114b29ea72a699cffc43bcc1a7a; size=5.1M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3298; labExpId=LID10571; bioRep=002C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapAlnRep2; type=bam; md5sum=1dd42d818027c74149a30b341be8a9ea; size=849M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3298; labExpId=LID10571; bioRep=002C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapAlnRep2; type=bai; md5sum=9f8ac7373accb45b041183b864af8a96; size=4.9M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4493; geoSampleAccession=GSM605629; labExpId=LID10572,LID10571; bioRep=001C,002C; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapContigs; type=bedRnaElements; md5sum=9209ff689d1f62487a6210afc0bed839; size=300K
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4493; geoSampleAccession=GSM605629; labExpId=LID10572,LID10571; bioRep=001C,002C; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=8faebd571ecacaea9a8ebafd6f8824f9; size=1.1M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3297; geoSampleAccession=GSM605629; labExpId=LID10572; bioRep=001C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapMinusRawRep1; type=bigWig; md5sum=561d398f0b543ed94d5a9079cfd93f4f; size=4.3M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapMinusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3298; geoSampleAccession=GSM605629; labExpId=LID10571; bioRep=002C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapMinusRawRep2; type=bigWig; md5sum=97f175810838a38fc4a9f6e7941a7c39; size=3.7M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapPlusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3297; geoSampleAccession=GSM605629; labExpId=LID10572; bioRep=001C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapPlusRawRep1; type=bigWig; md5sum=7a403e4fc6c5bc7699d04a7ad01bb13d; size=4.3M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapPlusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3298; geoSampleAccession=GSM605629; labExpId=LID10571; bioRep=002C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapPlusRawRep2; type=bigWig; md5sum=a8a864882059a8bc5a8983fecae17da2; size=3.6M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-18; subId=5684; geoSampleAccession=GSM605629; labExpId=LID10572; bioRep=001C; seqPlatform=Illumina_GA2x; type=pdf; md5sum=725654f55054db59a620c61392020e17; size=289K
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wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapRawDataRep1.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3297; geoSampleAccession=GSM605629; labExpId=LID10572; bioRep=001C; seqPlatform=Illumina_GA2x; type=fastq; md5sum=9d48f1ef3da7b8ab1286b53bf350c064; size=615M
wgEncodeCshlShortRnaSeqK562CytosolShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000206; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3298; geoSampleAccession=GSM605629; labExpId=LID10571; bioRep=002C; seqPlatform=Illumina_GA2x; type=fastq; md5sum=d1975ef6efba87c8821f901af53eabc4; size=548M
wgEncodeCshlShortRnaSeqK562NucleolusShortAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleolus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1408; geoSampleAccession=GSM605628; labExpId=crg-37; bioRep=gen0143NL; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShortAln; type=bam; md5sum=92bc993126f0a9034a9396a1caf5f36b; size=60M
wgEncodeCshlShortRnaSeqK562NucleolusShortAln.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleolus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1408; geoSampleAccession=GSM605628; labExpId=crg-37; bioRep=gen0143NL; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShortAln; type=bai; md5sum=bf9af5435daaf488b35e7623d9fa99aa; size=4.9M
wgEncodeCshlShortRnaSeqK562NucleolusShortMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=nucleolus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1408; geoSampleAccession=GSM605628; labExpId=crg-37; bioRep=gen0143NL; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShortMinusRaw; type=bigWig; md5sum=001f287c628c3e66ab546930f00ab81f; size=39M
wgEncodeCshlShortRnaSeqK562NucleolusShortPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=nucleolus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1408; geoSampleAccession=GSM605628; labExpId=crg-37; bioRep=gen0143NL; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShortPlusRaw; type=bigWig; md5sum=4389273c52e0e7a5bc4146d4c0c2ee00; size=39M
wgEncodeCshlShortRnaSeqK562NucleolusShortRawData.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=nucleolus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Fall 2009 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2009-09-23; dateUnrestricted=2010-06-23; subId=535; geoSampleAccession=GSM605628; labExpId=crg-37; bioRep=gen0143NL; labVersion=Produced by Hannon Lab; type=fastq; md5sum=79bcdc9187199406e6638d03173164fe; size=1.1G
wgEncodeCshlShortRnaSeqK562NucleolusShortTransfrags.shortFrags.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Transfrags; cell=K562; localization=nucleolus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2009-09-23; dateResubmitted=2010-07-20; dateUnrestricted=2010-06-23; subId=1965; geoSampleAccession=GSM605628; labExpId=crg-37; bioRep=gen0143NL; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShortTransfrags; type=shortFrags; md5sum=499f8b948c6329c62c2aa0aafd514570; size=6.0M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapAlnRep3.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3366; labExpId=LID8928; bioRep=025NL; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapAlnRep3; type=bam; md5sum=63fb0bb9ad9c1a7bbcb9cc2cd44be86d; size=991M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapAlnRep3.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3366; labExpId=LID8928; bioRep=025NL; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapAlnRep3; type=bai; md5sum=1b941e63297d5f451091797bb6814c9a; size=4.9M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapAlnRep4.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3367; labExpId=LID18558; bioRep=026NL; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapAlnRep4; type=bam; md5sum=4166bbab0e923c0f407861b9d230cd63; size=983M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapAlnRep4.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3367; labExpId=LID18558; bioRep=026NL; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapAlnRep4; type=bai; md5sum=39451aad620cabf2605017dfdd08cf45; size=4.7M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4481; geoSampleAccession=GSM605628; labExpId=LID8928,LID18558; bioRep=025NL,026NL; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapContigs; type=bedRnaElements; md5sum=6e39fecf670f81058fe63c4dac7941d8; size=535K
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4481; geoSampleAccession=GSM605628; labExpId=LID8928,LID18558; bioRep=025NL,026NL; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=16e37beddb6a8d43426a1d646d95bb9e; size=1.2M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapMinusRawRep3.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3366; geoSampleAccession=GSM605628; labExpId=LID8928; bioRep=025NL; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapMinusRawRep3; type=bigWig; md5sum=81ac50814794826209a74b836b8c0819; size=3.9M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapMinusRawRep4.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3367; geoSampleAccession=GSM605628; labExpId=LID18558; bioRep=026NL; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapMinusRawRep4; type=bigWig; md5sum=be54c86ef9b4b615a9ed0828537c0270; size=3.9M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapPlusRawRep3.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3366; geoSampleAccession=GSM605628; labExpId=LID8928; bioRep=025NL; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapPlusRawRep3; type=bigWig; md5sum=5b4f8a64dcf8efb943c90e21570d2826; size=3.9M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapPlusRawRep4.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3367; geoSampleAccession=GSM605628; labExpId=LID18558; bioRep=026NL; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapPlusRawRep4; type=bigWig; md5sum=91a25d4462f68dbe7c3dbaac3675e2c0; size=3.9M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapRawDataRep3.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3366; geoSampleAccession=GSM605628; labExpId=LID8928; bioRep=025NL; seqPlatform=Illumina_GA2x; type=fastq; md5sum=f96e4e47e52b37d978eef27adf7df636; size=851M
wgEncodeCshlShortRnaSeqK562NucleolusShorttotalTapRawDataRep4.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=nucleolus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000207; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3367; geoSampleAccession=GSM605628; labExpId=LID18558; bioRep=026NL; seqPlatform=Illumina_GA2x; type=fastq; md5sum=1be1fa8860e592135bba9e01ee0c4b19; size=838M
wgEncodeCshlShortRnaSeqK562NucleoplasmShortAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1411; geoSampleAccession=GSM605634; labExpId=crg-39; bioRep=gen0146NP; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShortAln; type=bam; md5sum=55f429d4f6b1d49fc7794a3277473cd4; size=554M
wgEncodeCshlShortRnaSeqK562NucleoplasmShortAln.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1411; geoSampleAccession=GSM605634; labExpId=crg-39; bioRep=gen0146NP; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShortAln; type=bai; md5sum=a65f37ad014019833c6e8cdf0368aa2a; size=5.7M
wgEncodeCshlShortRnaSeqK562NucleoplasmShortMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1411; geoSampleAccession=GSM605634; labExpId=crg-39; bioRep=gen0146NP; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShortMinusRaw; type=bigWig; md5sum=304e95f4f0fd3770e05ee3e77afe5a23; size=436M
wgEncodeCshlShortRnaSeqK562NucleoplasmShortPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1411; geoSampleAccession=GSM605634; labExpId=crg-39; bioRep=gen0146NP; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShortPlusRaw; type=bigWig; md5sum=f3c9ab8009d30d29e4d8744f62dd7ab6; size=446M
wgEncodeCshlShortRnaSeqK562NucleoplasmShortRawData.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Fall 2009 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2009-09-23; dateUnrestricted=2010-06-23; subId=535; geoSampleAccession=GSM605634; labExpId=crg-39; bioRep=gen0146NP; labVersion=Produced by Hannon Lab; type=fastq; md5sum=4fa23b0b2b4429814f7fb6e151dd31bc; size=1.9G
wgEncodeCshlShortRnaSeqK562NucleoplasmShortTransfrags.shortFrags.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Transfrags; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2009-09-23; dateResubmitted=2010-07-20; dateUnrestricted=2010-06-23; subId=1965; geoSampleAccession=GSM605634; labExpId=crg-39; bioRep=gen0146NP; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShortTransfrags; type=shortFrags; md5sum=135787d24694f7999dd87a0ae4b98c54; size=151M
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapAlnRep3.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3368; labExpId=LID8929; bioRep=025NP; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapAlnRep3; type=bam; md5sum=9810e20cb34749352426228fe22f2fe0; size=1.4G
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapAlnRep3.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3368; labExpId=LID8929; bioRep=025NP; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapAlnRep3; type=bai; md5sum=a8cb8ee02041cc431bdd6556489ec42f; size=5.6M
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapAlnRep4.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3369; labExpId=LID18559; bioRep=026NP; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapAlnRep4; type=bam; md5sum=4e180551cf0af4c72d4687e3a3f4a0be; size=1.4G
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapAlnRep4.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3369; labExpId=LID18559; bioRep=026NP; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapAlnRep4; type=bai; md5sum=7eec99bf1310b714b26f6f52840e98e8; size=5.6M
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4494; geoSampleAccession=GSM605634; labExpId=LID8929,LID18559; bioRep=025NP,026NP; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapContigs; type=bedRnaElements; md5sum=8d9bcf4f8c0a71d8a136a1f481e13bd9; size=13M
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4494; geoSampleAccession=GSM605634; labExpId=LID8929,LID18559; bioRep=025NP,026NP; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=fa3c27ef7846dae19b90a3642c2cb600; size=3.8M
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapMinusRawRep3.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3368; geoSampleAccession=GSM605634; labExpId=LID8929; bioRep=025NP; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapMinusRawRep3; type=bigWig; md5sum=e6054ab6e5ef0109e7e4d9031734c5e9; size=34M
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapMinusRawRep4.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3369; geoSampleAccession=GSM605634; labExpId=LID18559; bioRep=026NP; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapMinusRawRep4; type=bigWig; md5sum=c22342750e8a7d444f17f756816aef1c; size=34M
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapPlusRawRep3.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3368; geoSampleAccession=GSM605634; labExpId=LID8929; bioRep=025NP; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapPlusRawRep3; type=bigWig; md5sum=5e021cf32cf5d735d4ee1ece911d2491; size=34M
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapPlusRawRep4.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3369; geoSampleAccession=GSM605634; labExpId=LID18559; bioRep=026NP; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapPlusRawRep4; type=bigWig; md5sum=592a4196ebc8283f27f9d4b4c3364b2c; size=34M
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapRawDataRep3.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3368; geoSampleAccession=GSM605634; labExpId=LID8929; bioRep=025NP; seqPlatform=Illumina_GA2x; type=fastq; md5sum=5d015dc471ccf8cd33abe038bdef4714; size=1.1G
wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalTapRawDataRep4.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=nucleoplasm; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000208; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3369; geoSampleAccession=GSM605634; labExpId=LID18559; bioRep=026NP; seqPlatform=Illumina_GA2x; type=fastq; md5sum=798b7bc9f941fadedc9d5027fc1f06f4; size=978M
wgEncodeCshlShortRnaSeqK562NucleusShortAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1407; geoSampleAccession=GSM605635; labExpId=crg-42; bioRep=gen0151N; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleusShortAln; type=bam; md5sum=fa47b4158cfa85da47bdfb92aa292110; size=32M
wgEncodeCshlShortRnaSeqK562NucleusShortAln.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1407; geoSampleAccession=GSM605635; labExpId=crg-42; bioRep=gen0151N; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleusShortAln; type=bai; md5sum=e6a521aa8435252f4660f573b8a96bf0; size=3.6M
wgEncodeCshlShortRnaSeqK562NucleusShortMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1407; geoSampleAccession=GSM605635; labExpId=crg-42; bioRep=gen0151N; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleusShortMinusRaw; type=bigWig; md5sum=f010b65dccf6e1f03578f1158728e2be; size=11M
wgEncodeCshlShortRnaSeqK562NucleusShortPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1407; geoSampleAccession=GSM605635; labExpId=crg-42; bioRep=gen0151N; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleusShortPlusRaw; type=bigWig; md5sum=808368bb38471e7a2422429257ac72ef; size=11M
wgEncodeCshlShortRnaSeqK562NucleusShortRawData.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Fall 2009 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2009-09-23; dateUnrestricted=2010-06-23; subId=535; geoSampleAccession=GSM605635; labExpId=crg-42; bioRep=gen0151N; labVersion=Produced by Hannon Lab; type=fastq; md5sum=47f0dc881271463933dd1ace317e18ff; size=391M
wgEncodeCshlShortRnaSeqK562NucleusShortTransfrags.shortFrags.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Transfrags; cell=K562; localization=nucleus; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2009-09-23; dateResubmitted=2010-07-20; dateUnrestricted=2010-06-23; subId=1965; geoSampleAccession=GSM605635; labExpId=crg-42; bioRep=gen0151N; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562NucleusShortTransfrags; type=shortFrags; md5sum=b846c25f354c246db00c65f16a379c72; size=1.2M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3299; labExpId=LID10570; bioRep=001N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapAlnRep1; type=bam; md5sum=938a80d561e144724d05d72faeee629a; size=782M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapAlnRep1.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3299; labExpId=LID10570; bioRep=001N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapAlnRep1; type=bai; md5sum=452593789b1044809eacd46b91ab9989; size=5.0M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3301; labExpId=LID10569; bioRep=002N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapAlnRep2; type=bam; md5sum=770d18aceac7c6dbce6c09fbd7169650; size=638M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3301; labExpId=LID10569; bioRep=002N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapAlnRep2; type=bai; md5sum=a4e2f0a4355c19a2507f121d58ecb6ad; size=5.0M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4490; geoSampleAccession=GSM605635; labExpId=LID10570,LID10569; bioRep=001N,002N; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapContigs; type=bedRnaElements; md5sum=7b80f1ac3518f3664d4cc1e5c283a4e0; size=511K
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4490; geoSampleAccession=GSM605635; labExpId=LID10570,LID10569; bioRep=001N,002N; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=ee64e445a0f98c4b6a8391d6cd9a9aa3; size=1.5M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3299; geoSampleAccession=GSM605635; labExpId=LID10570; bioRep=001N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapMinusRawRep1; type=bigWig; md5sum=2ae269e5e5422a9dc7ddeb4de88526da; size=3.9M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapMinusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3301; geoSampleAccession=GSM605635; labExpId=LID10569; bioRep=002N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapMinusRawRep2; type=bigWig; md5sum=1836a0ae8ee33ac6cb55508809dacbc1; size=4.0M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapPlusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3299; geoSampleAccession=GSM605635; labExpId=LID10570; bioRep=001N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapPlusRawRep1; type=bigWig; md5sum=d33b7dfb19f123ffbe91e909494cbdfa; size=3.9M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapPlusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3301; geoSampleAccession=GSM605635; labExpId=LID10569; bioRep=002N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapPlusRawRep2; type=bigWig; md5sum=8b5ca5b6923b1f7175bb643a7c59572e; size=3.9M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-18; subId=5708; geoSampleAccession=GSM605635; labExpId=LID10570; bioRep=001N; seqPlatform=Illumina_GA2x; type=pdf; md5sum=8f77463de47ac2d3afefc8aef66540fa; size=286K
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wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapRawDataRep1.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3299; geoSampleAccession=GSM605635; labExpId=LID10570; bioRep=001N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=7857ffa8cf4b9892b8dbc2522be6b89c; size=808M
wgEncodeCshlShortRnaSeqK562NucleusShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000209; dateSubmitted=2011-01-18; dateUnrestricted=2011-10-18; subId=3301; geoSampleAccession=GSM605635; labExpId=LID10569; bioRep=002N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=02685eb72683978c71ef658a35056631; size=667M
wgEncodeCshlShortRnaSeqK562PolysomeShortAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=polysome; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000210; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1410; geoSampleAccession=GSM605631; labExpId=crg-44; bioRep=gen0154P; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562PolysomeShortAln; type=bam; md5sum=1d6729a0e7ef60365ef0c12627666b41; size=4.5M
wgEncodeCshlShortRnaSeqK562PolysomeShortAln.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=K562; localization=polysome; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000210; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1410; geoSampleAccession=GSM605631; labExpId=crg-44; bioRep=gen0154P; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562PolysomeShortAln; type=bai; md5sum=5b32aca4a321202ab1903d7eb482bfab; size=2.4M
wgEncodeCshlShortRnaSeqK562PolysomeShortMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=K562; localization=polysome; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000210; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1410; geoSampleAccession=GSM605631; labExpId=crg-44; bioRep=gen0154P; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562PolysomeShortMinusRaw; type=bigWig; md5sum=4cd0855c5b328c169d0dbb06a4531336; size=4.5M
wgEncodeCshlShortRnaSeqK562PolysomeShortPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=K562; localization=polysome; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dccAccession=wgEncodeEH000210; dateSubmitted=2009-09-23; dateResubmitted=2010-06-14; dateUnrestricted=2010-06-23; subId=1410; geoSampleAccession=GSM605631; labExpId=crg-44; bioRep=gen0154P; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562PolysomeShortPlusRaw; type=bigWig; md5sum=36c98037c3852b824e1da0efa2ac3090; size=4.5M
wgEncodeCshlShortRnaSeqK562PolysomeShortRawData.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=K562; localization=polysome; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Fall 2009 Freeze; dccAccession=wgEncodeEH000210; dateSubmitted=2009-09-23; dateUnrestricted=2010-06-23; subId=535; geoSampleAccession=GSM605631; labExpId=crg-44; bioRep=gen0154P; labVersion=Produced by Hannon Lab; type=fastq; md5sum=7916e2647309884d4dc586790fb04222; size=297M
wgEncodeCshlShortRnaSeqK562PolysomeShortTransfrags.shortFrags.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Transfrags; cell=K562; localization=polysome; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000210; dateSubmitted=2009-09-23; dateResubmitted=2010-07-20; dateUnrestricted=2010-06-23; subId=1965; geoSampleAccession=GSM605631; labExpId=crg-44; bioRep=gen0154P; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqK562PolysomeShortTransfrags; type=shortFrags; md5sum=7af2e4e15b34c58e1eabf798cfe2fca5; size=325K
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wgEncodeCshlShortRnaSeqNhekCellShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=NHEK; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001091; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3371; labExpId=LID20999; bioRep=007WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekCellShorttotalTapAlnRep1; type=bam; md5sum=3f6f90b587214ce0e8a2bbafe80b025e; size=1.3G
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wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapAlnRep3.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3373; labExpId=LID21002; bioRep=027C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapAlnRep3; type=bam; md5sum=22df271f2e055ac3a6ba4f82f411bb29; size=1.8G
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wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4469; geoSampleAccession=GSM897078; labExpId=LID21002,LID21004; bioRep=027C,028C; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapContigs; type=bedRnaElements; md5sum=0aa2ccb251b6b8daa3c0f9c0b936f4c6; size=632K
wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4469; geoSampleAccession=GSM897078; labExpId=LID21002,LID21004; bioRep=027C,028C; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=dc206f3ab00485e7fd9659c376981e8b; size=1.9M
wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapMinusRawRep3.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3373; geoSampleAccession=GSM897078; labExpId=LID21002; bioRep=027C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapMinusRawRep3; type=bigWig; md5sum=eff824d26e69a9053d8dddbb0684dd9c; size=4.8M
wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapMinusRawRep4.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3374; geoSampleAccession=GSM897078; labExpId=LID21004; bioRep=028C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapMinusRawRep4; type=bigWig; md5sum=c1e524f323d185200277800248d1e1e5; size=5.0M
wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapPlusRawRep3.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3373; geoSampleAccession=GSM897078; labExpId=LID21002; bioRep=027C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapPlusRawRep3; type=bigWig; md5sum=cc831581083bd473b41f7cd427fffb11; size=4.8M
wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapPlusRawRep4.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3374; geoSampleAccession=GSM897078; labExpId=LID21004; bioRep=028C; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapPlusRawRep4; type=bigWig; md5sum=b6ec92eb7fa88e200e046ab169ab0610; size=5.0M
wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapProtocolRep3.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5686; geoSampleAccession=GSM897078; labExpId=LID21002; bioRep=027C; seqPlatform=Illumina_GA2x; type=pdf; md5sum=62b5d06ed893cfd5bf2b70e565f317e8; size=333K
wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapProtocolRep4.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5713; geoSampleAccession=GSM897078; labExpId=LID21004; bioRep=028C; seqPlatform=Illumina_GA2x; type=pdf; md5sum=45ca9ad813b9c291ebeb31589d7d6fb1; size=293K
wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapRawDataRep3.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3373; geoSampleAccession=GSM897078; labExpId=LID21002; bioRep=027C; seqPlatform=Illumina_GA2x; type=fastq; md5sum=8815f0827d4783aa21a5dd280641b0a2; size=1.1G
wgEncodeCshlShortRnaSeqNhekCytosolShorttotalTapRawDataRep4.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=NHEK; localization=cytosol; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001092; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3374; geoSampleAccession=GSM897078; labExpId=LID21004; bioRep=028C; seqPlatform=Illumina_GA2x; type=fastq; md5sum=ead145e114537185482da76f2f6c2400; size=1.1G
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapAlnRep3.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3380; labExpId=LID21001; bioRep=027N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapAlnRep3; type=bam; md5sum=86dfffadc9e67c5f19870f957198ce4d; size=675M
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapAlnRep3.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3380; labExpId=LID21001; bioRep=027N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapAlnRep3; type=bai; md5sum=44fbb70c74744a372f8e867ccc874fce; size=4.0M
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapAlnRep4.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3375; labExpId=LID21003; bioRep=028N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapAlnRep4; type=bam; md5sum=055e5581e306819524a51f19749eaa58; size=817M
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapAlnRep4.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3375; labExpId=LID21003; bioRep=028N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapAlnRep4; type=bai; md5sum=11b532bec87b6284b8f0d102fe1d02d8; size=4.5M
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapContigs.bedRnaElements.gz	objStatus=replaced - new version of the data can be found in object wgEncodeCshlShortRnaSeqNhekNucleusTapContigs, the data were regenerated.; project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4492; geoSampleAccession=GSM897076; labExpId=LID21001,LID21003; bioRep=027N,028N; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapContigs; type=bedRnaElements; md5sum=1dd783bbfcf1dc60bab89f72ba90f9f6; size=241K
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4492; geoSampleAccession=GSM897076; labExpId=LID21001,LID21003; bioRep=027N,028N; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=7c4ab7c6178ec276264cc459ae2c0558; size=884K
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapMinusRawRep3.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3380; geoSampleAccession=GSM897076; labExpId=LID21001; bioRep=027N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapMinusRawRep3; type=bigWig; md5sum=f1aed5ec40443beee05d7f80307ad2cb; size=1.6M
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapMinusRawRep4.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3375; geoSampleAccession=GSM897076; labExpId=LID21003; bioRep=028N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapMinusRawRep4; type=bigWig; md5sum=d0c13d4a419eee2a3390fea8f807bc11; size=2.0M
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapPlusRawRep3.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3380; geoSampleAccession=GSM897076; labExpId=LID21001; bioRep=027N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapPlusRawRep3; type=bigWig; md5sum=8ed219b83cd0f36a4d0495e6642427c7; size=1.6M
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapPlusRawRep4.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3375; geoSampleAccession=GSM897076; labExpId=LID21003; bioRep=028N; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapPlusRawRep4; type=bigWig; md5sum=61e3ab67bd0e1f27649dbc901e419a22; size=1.9M
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapProtocolRep3.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5701; geoSampleAccession=GSM897076; labExpId=LID21001; bioRep=027N; seqPlatform=Illumina_GA2x; type=pdf; md5sum=0fbb145eec88cbe6028ae6f787dd9b15; size=338K
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapProtocolRep4.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5683; geoSampleAccession=GSM897076; labExpId=LID21003; bioRep=028N; seqPlatform=Illumina_GA2x; type=pdf; md5sum=9c80675c45ec42866dfae3ef6d252929; size=333K
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapRawDataRep3.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=3; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3380; geoSampleAccession=GSM897076; labExpId=LID21001; bioRep=027N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=a32508dc782736896419d2939422c387; size=769M
wgEncodeCshlShortRnaSeqNhekNucleusShorttotalTapRawDataRep4.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=NHEK; localization=nucleus; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=4; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001093; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3375; geoSampleAccession=GSM897076; labExpId=LID21003; bioRep=028N; seqPlatform=Illumina_GA2x; type=fastq; md5sum=5d296705dea53646051ca6e752bede15; size=898M
wgEncodeCshlShortRnaSeqProstateCellShortTransfrags.shortFrags.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Transfrags; cell=prostate; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000211; dateSubmitted=2009-09-23; dateResubmitted=2010-07-20; dateUnrestricted=2010-06-23; subId=1965; geoSampleAccession=GSM605626; labExpId=crg-61; bioRep=gen0161WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqProstateCellShortTransfrags; type=shortFrags; md5sum=b6f38dbc11f6820eef4cfbc456373e45; size=3.7M
wgEncodeCshlShortRnaSeqProstateCellTotalAln.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=prostate; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000211; dateSubmitted=2009-09-23; dateResubmitted=2010-06-30; dateUnrestricted=2010-06-23; subId=1837; geoSampleAccession=GSM605626; labExpId=crg-61; bioRep=gen0161WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqProstateCellTotalAln; type=bam; md5sum=8ee9ea5b2f0854fcacda49f88725baf6; size=98M
wgEncodeCshlShortRnaSeqProstateCellTotalAln.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=prostate; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000211; dateSubmitted=2009-09-23; dateResubmitted=2010-06-30; dateUnrestricted=2010-06-23; subId=1837; geoSampleAccession=GSM605626; labExpId=crg-61; bioRep=gen0161WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqProstateCellTotalAln; type=bai; md5sum=c3b0190ef41a3178226e64aab0e129cb; size=5.0M
wgEncodeCshlShortRnaSeqProstateCellTotalMinusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=prostate; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000211; dateSubmitted=2009-09-23; dateResubmitted=2010-06-30; dateUnrestricted=2010-06-23; subId=1837; geoSampleAccession=GSM605626; labExpId=crg-61; bioRep=gen0161WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqProstateCellTotalMinusRaw; type=bigWig; md5sum=e759d7207450fd4bd88007ba2b6e14b7; size=31M
wgEncodeCshlShortRnaSeqProstateCellTotalPlusRaw.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=prostate; localization=cell; rnaExtract=shortTotal; protocol=TAP-Only; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000211; dateSubmitted=2009-09-23; dateResubmitted=2010-06-30; dateUnrestricted=2010-06-23; subId=1837; geoSampleAccession=GSM605626; labExpId=crg-61; bioRep=gen0161WC; labVersion=Produced by Hannon Lab; tableName=wgEncodeCshlShortRnaSeqProstateCellTotalPlusRaw; type=bigWig; md5sum=16fe0adb8bae85a625f9b391dc0a17a2; size=31M
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wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapAlnRep1.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3376; labExpId=LID20747; bioRep=019WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapAlnRep1; type=bam; md5sum=5cadbe1fc66d9ae3f761c1d790f02d15; size=1.3G
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapAlnRep1.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3376; labExpId=LID20747; bioRep=019WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapAlnRep1; type=bai; md5sum=f0b7aa64a574189b47c640142d077b30; size=5.3M
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapAlnRep2.bam	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3377; labExpId=LID20748; bioRep=020WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapAlnRep2; type=bam; md5sum=913ee61cd5a672cd3a549a233ae2b156; size=1.2G
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapAlnRep2.bam.bai	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Alignments; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3377; labExpId=LID20748; bioRep=020WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapAlnRep2; type=bai; md5sum=101fc9a22f36362cffbb19f030c12b29; size=5.2M
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapContigs.bedRnaElements.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Contigs; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-07-12; dateResubmitted=2012-02-07; dateUnrestricted=2012-04-12; subId=4471; geoSampleAccession=GSM897070; labExpId=LID20747,LID20748; bioRep=019WC,020WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapContigs; type=bedRnaElements; md5sum=cfc763c1c3e0733e4b198094d1b31438; size=613K
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapExonsGencV7.gtf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-07-12; dateUnrestricted=2012-04-12; subId=4471; geoSampleAccession=GSM897070; labExpId=LID20747,LID20748; bioRep=019WC,020WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; type=gtf; md5sum=bdf7c62de15dd40edeaafc705ea498f3; size=1.5M
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapMinusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3376; geoSampleAccession=GSM897070; labExpId=LID20747; bioRep=019WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapMinusRawRep1; type=bigWig; md5sum=82c83d331341e068b130f7e142ee1a69; size=5.1M
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapMinusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3377; geoSampleAccession=GSM897070; labExpId=LID20748; bioRep=020WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapMinusRawRep2; type=bigWig; md5sum=5566d962153a68b78fb351c5d69aef13; size=4.6M
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapPlusRawRep1.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3376; geoSampleAccession=GSM897070; labExpId=LID20747; bioRep=019WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapPlusRawRep1; type=bigWig; md5sum=b1f6556ea8d2922511c5a3e2126787ef; size=5.0M
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapPlusRawRep2.bigWig	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3377; geoSampleAccession=GSM897070; labExpId=LID20748; bioRep=020WC; seqPlatform=Illumina_GA2x; tableName=wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapPlusRawRep2; type=bigWig; md5sum=1c598500a448a72b8b514b855baaba7d; size=4.6M
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapProtocolRep1.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5679; geoSampleAccession=GSM897070; labExpId=LID20747; bioRep=019WC; seqPlatform=Illumina_GA2x; type=pdf; md5sum=10a126dd3b95b8011132005d2b3c205c; size=318K
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapProtocolRep2.pdf.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=Protocol; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2012-02-15; dateUnrestricted=2011-10-19; subId=5692; geoSampleAccession=GSM897070; labExpId=LID20748; bioRep=020WC; seqPlatform=Illumina_GA2x; type=pdf; md5sum=4c08caaef8a04cbda0c569b21dd7c666; size=317K
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapRawDataRep1.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3376; geoSampleAccession=GSM897070; labExpId=LID20747; bioRep=019WC; seqPlatform=Illumina_GA2x; type=fastq; md5sum=aca2e59982611d4a7dff78c742e72301; size=984M
wgEncodeCshlShortRnaSeqSknshraCellShorttotalTapRawDataRep2.fastq.gz	project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlShortRnaSeq; dataType=RnaSeq; view=RawData; cell=SK-N-SH_RA; localization=cell; rnaExtract=shortTotal; readType=1x36; protocol=TAP-Only; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH001094; dateSubmitted=2011-01-19; dateUnrestricted=2011-10-19; subId=3377; geoSampleAccession=GSM897070; labExpId=LID20748; bioRep=020WC; seqPlatform=Illumina_GA2x; type=fastq; md5sum=9e4f1246736d063a896c3172acc04a09; size=924M