[DIR] Parent Directory

This directory contains data generated by the Gingeras/CSHL lab as part of the ENCODE project. Further information is available in the CSHL RnaSeq track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:

  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2011-10-19wgEncodeCshlShortRnaSeqAg04450CellShorttotalAlnRep1.bam.bai  5.3M  2011-01-19  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20745; subId=3335; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=017WC; dccRep=1; labProtocolId=017WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqAg04450CellShorttotalAlnRep1.bam  1.1G  2011-01-19  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20745; subId=3335; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=017WC; dccRep=1; labProtocolId=017WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqAg04450CellShorttotalMinusRawRep1.bigWig  4.6M  2011-01-19  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20745; subId=3335; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=017WC; dccRep=1; labProtocolId=017WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqAg04450CellShorttotalPlusRawRep1.bigWig  4.6M  2011-01-19  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20745; subId=3335; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=017WC; dccRep=1; labProtocolId=017WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqAg04450CellShorttotalRawDataRep1.fastq.gz  972M  2011-01-19  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20745; subId=3335; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=017WC; dccRep=1; labProtocolId=017WCs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqAg04450CellShorttotalContigs.bedRnaElements.gz  754K  2011-03-31  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=1,2; labExpId=LID20745,LID20746; subId=3843; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=017WC,018WC; dccRep=Pooled; labProtocolId=017WCs,018WCs
      2011-10-19wgEncodeCshlShortRnaSeqAg04450CellShorttotalAlnRep2.bam.bai  5.3M  2011-01-19  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20746; subId=3336; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=018WC; dccRep=2; labProtocolId=018WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqAg04450CellShorttotalAlnRep2.bam  1.1G  2011-01-19  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20746; subId=3336; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=018WC; dccRep=2; labProtocolId=018WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqAg04450CellShorttotalMinusRawRep2.bigWig  4.8M  2011-01-19  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20746; subId=3336; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=018WC; dccRep=2; labProtocolId=018WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqAg04450CellShorttotalPlusRawRep2.bigWig  4.8M  2011-01-19  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20746; subId=3336; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=018WC; dccRep=2; labProtocolId=018WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqAg04450CellShorttotalRawDataRep2.fastq.gz  961M  2011-01-19  dataType=RnaSeq; cell=AG04450; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20746; subId=3336; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=018WC; dccRep=2; labProtocolId=018WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqBjCellShorttotalAlnRep1.bam.bai  4.6M  2011-01-18  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20909; subId=3294; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=037WC; dccRep=1; labProtocolId=037WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqBjCellShorttotalAlnRep1.bam  941M  2011-01-18  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20909; subId=3294; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=037WC; dccRep=1; labProtocolId=037WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqBjCellShorttotalMinusRawRep1.bigWig  2.0M  2011-01-18  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20909; subId=3294; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=037WC; dccRep=1; labProtocolId=037WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqBjCellShorttotalPlusRawRep1.bigWig  1.9M  2011-01-18  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20909; subId=3294; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=037WC; dccRep=1; labProtocolId=037WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqBjCellShorttotalRawDataRep1.fastq.gz  871M  2011-01-18  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20909; subId=3294; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=037WC; dccRep=1; labProtocolId=037WCs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqBjCellShorttotalContigs.bedRnaElements.gz  525K  2011-03-31  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=1,2; labExpId=LID20909,LID20910; subId=3844; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=037WC,038WC; dccRep=Pooled; labProtocolId=037WCs,038WCs
      2011-10-18wgEncodeCshlShortRnaSeqBjCellShorttotalAlnRep2.bam.bai  5.1M  2011-01-18  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20910; subId=3293; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=038WC; dccRep=2; labProtocolId=038WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqBjCellShorttotalAlnRep2.bam  1.1G  2011-01-18  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20910; subId=3293; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=038WC; dccRep=2; labProtocolId=038WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqBjCellShorttotalMinusRawRep2.bigWig  3.9M  2011-01-18  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20910; subId=3293; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=038WC; dccRep=2; labProtocolId=038WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqBjCellShorttotalPlusRawRep2.bigWig  3.9M  2011-01-18  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20910; subId=3293; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=038WC; dccRep=2; labProtocolId=038WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqBjCellShorttotalRawDataRep2.fastq.gz  854M  2011-01-18  dataType=RnaSeq; cell=BJ; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20910; subId=3293; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=038WC; dccRep=2; labProtocolId=038WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CellShorttotalAlnRep1.bam.bai  5.2M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20899; subId=3302; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=003WC; dccRep=1; labProtocolId=003WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CellShorttotalAlnRep1.bam  1.3G  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20899; subId=3302; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=003WC; dccRep=1; labProtocolId=003WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CellShorttotalMinusRawRep1.bigWig  4.9M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20899; subId=3302; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=003WC; dccRep=1; labProtocolId=003WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CellShorttotalPlusRawRep1.bigWig  4.9M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20899; subId=3302; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=003WC; dccRep=1; labProtocolId=003WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CellShorttotalRawDataRep1.fastq.gz  901M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20899; subId=3302; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=003WC; dccRep=1; labProtocolId=003WCs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqGm12878CellShorttotalContigs.bedRnaElements.gz  1.1M  2011-03-31  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=1,2; labExpId=LID20899,LID20902; subId=3847; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=003WC,004WC; dccRep=Pooled; labProtocolId=003WCs,004WCs
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CellShorttotalAlnRep2.bam.bai  5.2M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20902; subId=3304; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=004WC; dccRep=2; labProtocolId=004WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CellShorttotalAlnRep2.bam  1.4G  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20902; subId=3304; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=004WC; dccRep=2; labProtocolId=004WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CellShorttotalMinusRawRep2.bigWig  5.1M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20902; subId=3304; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=004WC; dccRep=2; labProtocolId=004WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CellShorttotalPlusRawRep2.bigWig  5.1M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20902; subId=3304; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=004WC; dccRep=2; labProtocolId=004WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CellShorttotalRawDataRep2.fastq.gz  1.1G  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20902; subId=3304; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=004WC; dccRep=2; labProtocolId=004WCs; origAssembly=hg19
      2010-10-14wgEncodeCshlShortRnaSeqGm12878CellShortRawData.fastq.gz  1.9G  2010-01-14  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; labExpId=crg-2; subId=1017; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; attic=auxExp; bioRep=gen0101WC; dccRep=1; geoSampleAccession=GSM605625; labProtocolId=gen0101WCs; origAssembly=hg18
      2010-10-14wgEncodeCshlShortRnaSeqGm12878CellShortAln.bam.bai  4.7M  2010-01-14  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; labExpId=crg-2; subId=1403; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; attic=auxExp; bioRep=gen0101WC; dccRep=1; geoSampleAccession=GSM605625; labProtocolId=gen0101WCs; origAssembly=hg18
      2010-10-14wgEncodeCshlShortRnaSeqGm12878CellShortAln.bam  53M  2010-01-14  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; labExpId=crg-2; subId=1403; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; attic=auxExp; bioRep=gen0101WC; dccRep=1; geoSampleAccession=GSM605625; labProtocolId=gen0101WCs; origAssembly=hg18
      2010-10-14wgEncodeCshlShortRnaSeqGm12878CellShortMinusRaw.bigWig  24M  2010-01-14  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; labExpId=crg-2; subId=1403; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0101WC; dccRep=1; geoSampleAccession=GSM605625; labProtocolId=gen0101WCs; origAssembly=hg18
      2010-10-14wgEncodeCshlShortRnaSeqGm12878CellShortPlusRaw.bigWig  24M  2010-01-14  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cell; labExpId=crg-2; subId=1403; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0101WC; dccRep=1; geoSampleAccession=GSM605625; labProtocolId=gen0101WCs; origAssembly=hg18
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalAlnRep1.bam.bai  5.0M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID20901; subId=3305; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=003C; dccRep=1; labProtocolId=003Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalAlnRep1.bam  1.3G  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID20901; subId=3305; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=003C; dccRep=1; labProtocolId=003Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalMinusRawRep1.bigWig  3.9M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID20901; subId=3305; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=003C; dccRep=1; labProtocolId=003Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalPlusRawRep1.bigWig  3.9M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID20901; subId=3305; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=003C; dccRep=1; labProtocolId=003Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalRawDataRep1.fastq.gz  770M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID20901; subId=3305; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=003C; dccRep=1; labProtocolId=003Cs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalContigs.bedRnaElements.gz  721K  2011-03-31  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=1,2; labExpId=LID20901,LID20904; subId=3845; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=003C,004C; dccRep=Pooled; labProtocolId=003Cs,004Cs
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalAlnRep2.bam.bai  5.2M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20904; subId=3307; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=004C; dccRep=2; labProtocolId=004Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalAlnRep2.bam  1.8G  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20904; subId=3307; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=004C; dccRep=2; labProtocolId=004Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalMinusRawRep2.bigWig  4.9M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20904; subId=3307; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=004C; dccRep=2; labProtocolId=004Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalPlusRawRep2.bigWig  4.9M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20904; subId=3307; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=004C; dccRep=2; labProtocolId=004Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878CytosolShorttotalRawDataRep2.fastq.gz  1.1G  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20904; subId=3307; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=004C; dccRep=2; labProtocolId=004Cs; origAssembly=hg19
      2010-06-23wgEncodeCshlShortRnaSeqGm12878CytosolShortAln.bam.bai  3.3M  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-4; subId=1404; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; attic=auxExp; bioRep=gen0108C; dccRep=1; geoSampleAccession=GSM605627; labProtocolId=gen0108Cs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqGm12878CytosolShortAln.bam  28M  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-4; subId=1404; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; attic=auxExp; bioRep=gen0108C; dccRep=1; geoSampleAccession=GSM605627; labProtocolId=gen0108Cs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqGm12878CytosolShortMinusRaw.bigWig  8.8M  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-4; subId=1404; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0108C; dccRep=1; geoSampleAccession=GSM605627; labProtocolId=gen0108Cs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqGm12878CytosolShortPlusRaw.bigWig  8.7M  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-4; subId=1404; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0108C; dccRep=1; geoSampleAccession=GSM605627; labProtocolId=gen0108Cs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqGm12878CytosolShortTransfrags.shortFrags.gz  876K  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-4; subId=1965; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-20; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Transfrags; type=shortFrags; attic=auxExp; bioRep=gen0108C; dccRep=1; geoSampleAccession=GSM605627; labProtocolId=gen0108Cs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqGm12878CytosolShortRawData.fastq.gz  1009M  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-4; subId=535; dataVersion=ENCODE Fall 2009 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; attic=auxExp; bioRep=gen0108C; dccRep=1; geoSampleAccession=GSM605627; labProtocolId=gen0108Cs; origAssembly=hg18
      2011-10-18wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalAlnRep1.bam.bai  5.1M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID20900; subId=3308; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=003N; dccRep=1; labProtocolId=003Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalAlnRep1.bam  841M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID20900; subId=3308; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=003N; dccRep=1; labProtocolId=003Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalMinusRawRep1.bigWig  4.4M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID20900; subId=3308; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=003N; dccRep=1; labProtocolId=003Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalPlusRawRep1.bigWig  4.4M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID20900; subId=3308; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=003N; dccRep=1; labProtocolId=003Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalRawDataRep1.fastq.gz  853M  2011-01-18  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID20900; subId=3308; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=003N; dccRep=1; labProtocolId=003Ns; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalContigs.bedRnaElements.gz  1.2M  2011-03-31  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=1,2; labExpId=LID20900,LID20903; subId=3846; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=003N,004N; dccRep=Pooled; labProtocolId=003Ns,004Ns
      2011-10-19wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalAlnRep2.bam.bai  4.8M  2011-01-19  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20903; subId=3338; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=004N; dccRep=2; labProtocolId=004Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalAlnRep2.bam  1.2G  2011-01-19  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20903; subId=3338; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=004N; dccRep=2; labProtocolId=004Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalMinusRawRep2.bigWig  3.9M  2011-01-19  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20903; subId=3338; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=004N; dccRep=2; labProtocolId=004Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalPlusRawRep2.bigWig  3.8M  2011-01-19  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20903; subId=3338; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=004N; dccRep=2; labProtocolId=004Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqGm12878NucleusShorttotalRawDataRep2.fastq.gz  1.1G  2011-01-19  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20903; subId=3338; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=004N; dccRep=2; labProtocolId=004Ns; origAssembly=hg19
      2010-06-23wgEncodeCshlShortRnaSeqGm12878NucleusShortAln.bam.bai  3.0M  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-6; subId=1402; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; attic=auxExp; bioRep=gen0112N; dccRep=1; geoSampleAccession=GSM605633; labProtocolId=gen0112Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqGm12878NucleusShortAln.bam  51M  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-6; subId=1402; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; attic=auxExp; bioRep=gen0112N; dccRep=1; geoSampleAccession=GSM605633; labProtocolId=gen0112Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqGm12878NucleusShortMinusRaw.bigWig  8.2M  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-6; subId=1402; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0112N; dccRep=1; geoSampleAccession=GSM605633; labProtocolId=gen0112Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqGm12878NucleusShortPlusRaw.bigWig  8.2M  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-6; subId=1402; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0112N; dccRep=1; geoSampleAccession=GSM605633; labProtocolId=gen0112Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqGm12878NucleusShortTransfrags.shortFrags.gz  1.2M  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-6; subId=1965; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-20; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Transfrags; type=shortFrags; attic=auxExp; bioRep=gen0112N; dccRep=1; geoSampleAccession=GSM605633; labProtocolId=gen0112Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqGm12878NucleusShortRawData.fastq.gz  1.3G  2009-09-23  dataType=RnaSeq; cell=GM12878; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-6; subId=535; dataVersion=ENCODE Fall 2009 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; attic=auxExp; bioRep=gen0112N; dccRep=1; geoSampleAccession=GSM605633; labProtocolId=gen0112Ns; origAssembly=hg18
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCellShorttotalAlnRep1.bam.bai  5.4M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20905; subId=3340; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=005WC; dccRep=1; labProtocolId=005WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCellShorttotalAlnRep1.bam  815M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20905; subId=3340; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=005WC; dccRep=1; labProtocolId=005WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCellShorttotalMinusRawRep1.bigWig  5.5M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20905; subId=3340; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=005WC; dccRep=1; labProtocolId=005WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCellShorttotalPlusRawRep1.bigWig  5.5M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20905; subId=3340; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=005WC; dccRep=1; labProtocolId=005WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCellShorttotalRawDataRep1.fastq.gz  759M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20905; subId=3340; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=005WC; dccRep=1; labProtocolId=005WCs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqH1hescCellShorttotalContigs.bedRnaElements.gz  1.1M  2011-03-31  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=1,2; labExpId=LID20905,LID20906; subId=3850; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=005WC,006WC; dccRep=Pooled; labProtocolId=005WCs,006WCs
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCellShorttotalAlnRep2.bam.bai  5.5M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20906; subId=3341; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=006WC; dccRep=2; labProtocolId=006WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCellShorttotalAlnRep2.bam  795M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20906; subId=3341; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=006WC; dccRep=2; labProtocolId=006WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCellShorttotalMinusRawRep2.bigWig  5.8M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20906; subId=3341; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=006WC; dccRep=2; labProtocolId=006WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCellShorttotalPlusRawRep2.bigWig  5.8M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20906; subId=3341; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=006WC; dccRep=2; labProtocolId=006WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCellShorttotalRawDataRep2.fastq.gz  731M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20906; subId=3341; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=006WC; dccRep=2; labProtocolId=006WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalAlnRep2.bam.bai  5.1M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20908; subId=3342; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=006C; dccRep=2; labProtocolId=006Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalAlnRep2.bam  563M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20908; subId=3342; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=006C; dccRep=2; labProtocolId=006Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalMinusRawRep2.bigWig  3.9M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20908; subId=3342; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=006C; dccRep=2; labProtocolId=006Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalPlusRawRep2.bigWig  3.9M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20908; subId=3342; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=006C; dccRep=2; labProtocolId=006Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalRawDataRep2.fastq.gz  453M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20908; subId=3342; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=006C; dccRep=2; labProtocolId=006Cs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqH1hescCytosolShorttotalContigs.bedRnaElements.gz  319K  2011-03-31  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID20908; subId=3848; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=006C; dccRep=Pooled; labProtocolId=006Cs
      2011-10-19wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalAlnRep2.bam.bai  4.3M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20907; subId=3343; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=006N; dccRep=2; labProtocolId=006Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalAlnRep2.bam  843M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20907; subId=3343; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=006N; dccRep=2; labProtocolId=006Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalMinusRawRep2.bigWig  1.9M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20907; subId=3343; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=006N; dccRep=2; labProtocolId=006Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalPlusRawRep2.bigWig  1.9M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20907; subId=3343; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=006N; dccRep=2; labProtocolId=006Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalRawDataRep2.fastq.gz  912M  2011-01-19  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20907; subId=3343; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=006N; dccRep=2; labProtocolId=006Ns; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqH1hescNucleusShorttotalContigs.bedRnaElements.gz  253K  2011-03-31  dataType=RnaSeq; cell=H1-hESC; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID20907; subId=3849; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=006N; dccRep=Pooled; labProtocolId=006Ns
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCellShorttotalAlnRep1.bam.bai  5.1M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID21054; subId=3358; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=009WC; dccRep=1; labProtocolId=009WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCellShorttotalAlnRep1.bam  1.4G  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID21054; subId=3358; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=009WC; dccRep=1; labProtocolId=009WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCellShorttotalMinusRawRep1.bigWig  3.9M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID21054; subId=3358; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=009WC; dccRep=1; labProtocolId=009WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCellShorttotalPlusRawRep1.bigWig  3.9M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID21054; subId=3358; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=009WC; dccRep=1; labProtocolId=009WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCellShorttotalRawDataRep1.fastq.gz  873M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID21054; subId=3358; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=009WC; dccRep=1; labProtocolId=009WCs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqHuvecCellShorttotalContigs.bedRnaElements.gz  738K  2011-03-31  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=1,2; labExpId=LID21054,LID21055; subId=3853; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=009WC,010WC; dccRep=Pooled; labProtocolId=009WCs,010WCs
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCellShorttotalAlnRep2.bam.bai  5.3M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21055; subId=3359; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=010WC; dccRep=2; labProtocolId=010WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCellShorttotalAlnRep2.bam  1.5G  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21055; subId=3359; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=010WC; dccRep=2; labProtocolId=010WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCellShorttotalMinusRawRep2.bigWig  4.7M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21055; subId=3359; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=010WC; dccRep=2; labProtocolId=010WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCellShorttotalPlusRawRep2.bigWig  4.7M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21055; subId=3359; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=010WC; dccRep=2; labProtocolId=010WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCellShorttotalRawDataRep2.fastq.gz  924M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21055; subId=3359; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=010WC; dccRep=2; labProtocolId=010WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalAlnRep3.bam.bai  5.5M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=3; labExpId=LID21057; subId=3360; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=029C; dccRep=1; labProtocolId=029Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalAlnRep3.bam  868M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=3; labExpId=LID21057; subId=3360; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=029C; dccRep=1; labProtocolId=029Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalMinusRawRep3.bigWig  6.9M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=3; labExpId=LID21057; subId=3360; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=029C; dccRep=1; labProtocolId=029Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalPlusRawRep3.bigWig  6.9M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=3; labExpId=LID21057; subId=3360; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=029C; dccRep=1; labProtocolId=029Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalRawDataRep3.fastq.gz  757M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=3; labExpId=LID21057; subId=3360; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=029C; dccRep=1; labProtocolId=029Cs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalContigs.bedRnaElements.gz  1.4M  2011-03-31  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=3,4; labExpId=LID21057,LID21059; subId=3851; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=029C,030C; dccRep=Pooled; labProtocolId=029Cs,030Cs
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalAlnRep4.bam.bai  5.2M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=4; labExpId=LID21059; subId=3361; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=030C; dccRep=2; labProtocolId=030Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalAlnRep4.bam  1.5G  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=4; labExpId=LID21059; subId=3361; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=030C; dccRep=2; labProtocolId=030Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalMinusRawRep4.bigWig  4.3M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=4; labExpId=LID21059; subId=3361; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=030C; dccRep=2; labProtocolId=030Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalPlusRawRep4.bigWig  4.3M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=4; labExpId=LID21059; subId=3361; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=030C; dccRep=2; labProtocolId=030Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecCytosolShorttotalRawDataRep4.fastq.gz  858M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=cytosol; replicate=4; labExpId=LID21059; subId=3361; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=030C; dccRep=2; labProtocolId=030Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalAlnRep3.bam.bai  5.5M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=nucleus; replicate=3; labExpId=LID21056; subId=3362; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=029N; dccRep=1; labProtocolId=029Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalAlnRep3.bam  1.1G  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=nucleus; replicate=3; labExpId=LID21056; subId=3362; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=029N; dccRep=1; labProtocolId=029Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalMinusRawRep3.bigWig  15M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=nucleus; replicate=3; labExpId=LID21056; subId=3362; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=029N; dccRep=1; labProtocolId=029Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalPlusRawRep3.bigWig  15M  2011-01-19  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=nucleus; replicate=3; labExpId=LID21056; subId=3362; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=029N; dccRep=1; labProtocolId=029Ns; origAssembly=hg19
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      2011-12-31wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalContigs.bedRnaElements.gz  3.6M  2011-03-31  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=nucleus; replicate=3,4; labExpId=LID21056,LID21058; subId=3852; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=029N,030N; dccRep=Pooled; labProtocolId=029Ns,030Ns
      2011-10-18wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalAlnRep4.bam.bai  5.5M  2011-01-18  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=nucleus; replicate=4; labExpId=LID21058; subId=3295; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=030N; dccRep=2; labProtocolId=030Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalAlnRep4.bam  832M  2011-01-18  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=nucleus; replicate=4; labExpId=LID21058; subId=3295; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=030N; dccRep=2; labProtocolId=030Ns; origAssembly=hg19
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      2011-10-18wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalPlusRawRep4.bigWig  12M  2011-01-18  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=nucleus; replicate=4; labExpId=LID21058; subId=3295; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=030N; dccRep=2; labProtocolId=030Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqHuvecNucleusShorttotalRawDataRep4.fastq.gz  748M  2011-01-18  dataType=RnaSeq; cell=HUVEC; rnaExtract=shortTotal; localization=nucleus; replicate=4; labExpId=LID21058; subId=3295; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=030N; dccRep=2; labProtocolId=030Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CellShorttotalAlnRep1.bam.bai  5.3M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID21143; subId=3344; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=011WC; dccRep=1; labProtocolId=011WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CellShorttotalAlnRep1.bam  1.1G  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID21143; subId=3344; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=011WC; dccRep=1; labProtocolId=011WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CellShorttotalMinusRawRep1.bigWig  5.4M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID21143; subId=3344; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=011WC; dccRep=1; labProtocolId=011WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CellShorttotalPlusRawRep1.bigWig  5.4M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID21143; subId=3344; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=011WC; dccRep=1; labProtocolId=011WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CellShorttotalRawDataRep1.fastq.gz  931M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID21143; subId=3344; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=011WC; dccRep=1; labProtocolId=011WCs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqHelas3CellShorttotalContigs.bedRnaElements.gz  1.2M  2011-03-31  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=1,2; labExpId=LID21143,LID21146; subId=3856; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=011WC,012WC; dccRep=Pooled; labProtocolId=011WCs,012WCs
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CellShorttotalAlnRep2.bam.bai  5.4M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21146; subId=3345; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=012WC; dccRep=2; labProtocolId=012WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CellShorttotalAlnRep2.bam  1.1G  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21146; subId=3345; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=012WC; dccRep=2; labProtocolId=012WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CellShorttotalMinusRawRep2.bigWig  6.2M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21146; subId=3345; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=012WC; dccRep=2; labProtocolId=012WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CellShorttotalPlusRawRep2.bigWig  6.2M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21146; subId=3345; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=012WC; dccRep=2; labProtocolId=012WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CellShorttotalRawDataRep2.fastq.gz  877M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21146; subId=3345; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=012WC; dccRep=2; labProtocolId=012WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalAlnRep1.bam.bai  5.3M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID21145; subId=3346; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=011C; dccRep=1; labProtocolId=011Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalAlnRep1.bam  1.1G  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID21145; subId=3346; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=011C; dccRep=1; labProtocolId=011Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalMinusRawRep1.bigWig  5.4M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID21145; subId=3346; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=011C; dccRep=1; labProtocolId=011Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalPlusRawRep1.bigWig  5.4M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID21145; subId=3346; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=011C; dccRep=1; labProtocolId=011Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalRawDataRep1.fastq.gz  924M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID21145; subId=3346; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=011C; dccRep=1; labProtocolId=011Cs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalContigs.bedRnaElements.gz  1.3M  2011-03-31  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=1,2; labExpId=LID21145,LID21148; subId=3854; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=011C,012C; dccRep=Pooled; labProtocolId=011Cs,012Cs
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalAlnRep2.bam.bai  5.4M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID21148; subId=3347; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=012C; dccRep=2; labProtocolId=012Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalAlnRep2.bam  1.3G  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID21148; subId=3347; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=012C; dccRep=2; labProtocolId=012Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalMinusRawRep2.bigWig  7.0M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID21148; subId=3347; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=012C; dccRep=2; labProtocolId=012Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalPlusRawRep2.bigWig  7.0M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID21148; subId=3347; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=012C; dccRep=2; labProtocolId=012Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalRawDataRep2.fastq.gz  935M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID21148; subId=3347; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=012C; dccRep=2; labProtocolId=012Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalAlnRep1.bam.bai  3.7M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID21144; subId=3348; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=011N; dccRep=1; labProtocolId=011Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalAlnRep1.bam  682M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID21144; subId=3348; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=011N; dccRep=1; labProtocolId=011Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalMinusRawRep1.bigWig  1.4M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID21144; subId=3348; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=011N; dccRep=1; labProtocolId=011Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalPlusRawRep1.bigWig  1.4M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID21144; subId=3348; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=011N; dccRep=1; labProtocolId=011Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalRawDataRep1.fastq.gz  717M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID21144; subId=3348; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=011N; dccRep=1; labProtocolId=011Ns; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalContigs.bedRnaElements.gz  475K  2011-03-31  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=1,2; labExpId=LID21144,LID21147; subId=3855; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=011N,012N; dccRep=Pooled; labProtocolId=011Ns,012Ns
      2011-10-19wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalAlnRep2.bam.bai  4.8M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID21147; subId=3349; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=012N; dccRep=2; labProtocolId=012Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalAlnRep2.bam  774M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID21147; subId=3349; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=012N; dccRep=2; labProtocolId=012Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalMinusRawRep2.bigWig  3.2M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID21147; subId=3349; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=012N; dccRep=2; labProtocolId=012Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalPlusRawRep2.bigWig  3.2M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID21147; subId=3349; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=012N; dccRep=2; labProtocolId=012Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqHelas3NucleusShorttotalRawDataRep2.fastq.gz  727M  2011-01-19  dataType=RnaSeq; cell=HeLa-S3; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID21147; subId=3349; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=012N; dccRep=2; labProtocolId=012Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CellShorttotalAlnRep1.bam.bai  5.1M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID10567; subId=3296; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=001WC; dccRep=1; labProtocolId=001WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CellShorttotalAlnRep1.bam  571M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID10567; subId=3296; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=001WC; dccRep=1; labProtocolId=001WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CellShorttotalMinusRawRep1.bigWig  4.2M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID10567; subId=3296; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=001WC; dccRep=1; labProtocolId=001WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CellShorttotalPlusRawRep1.bigWig  4.2M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID10567; subId=3296; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=001WC; dccRep=1; labProtocolId=001WCs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CellShorttotalRawDataRep1.fastq.gz  587M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID10567; subId=3296; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=001WC; dccRep=1; labProtocolId=001WCs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqK562CellShorttotalContigs.bedRnaElements.gz  515K  2011-03-31  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=1,2; labExpId=LID10567,LID10568; subId=3862; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=001WC,002WC; dccRep=Pooled; labProtocolId=001WCs,002WCs
      2011-10-19wgEncodeCshlShortRnaSeqK562CellShorttotalAlnRep2.bam.bai  5.2M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID10568; subId=3363; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=002WC; dccRep=2; labProtocolId=002WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562CellShorttotalAlnRep2.bam  996M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID10568; subId=3363; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=002WC; dccRep=2; labProtocolId=002WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562CellShorttotalMinusRawRep2.bigWig  4.4M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID10568; subId=3363; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=002WC; dccRep=2; labProtocolId=002WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562CellShorttotalPlusRawRep2.bigWig  4.3M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID10568; subId=3363; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=002WC; dccRep=2; labProtocolId=002WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562CellShorttotalRawDataRep2.fastq.gz  730M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID10568; subId=3363; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=002WC; dccRep=2; labProtocolId=002WCs; origAssembly=hg19
      2010-10-14wgEncodeCshlShortRnaSeqK562CellShortRawData.fastq.gz  1.9G  2010-01-14  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; labExpId=crg-31; subId=1000; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; attic=auxExp; bioRep=gen0130WC; dccRep=1; geoSampleAccession=GSM605630; labProtocolId=gen0130WCs; origAssembly=hg18
      2010-10-14wgEncodeCshlShortRnaSeqK562CellShortAln.bam.bai  4.4M  2010-01-14  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; labExpId=crg-31; subId=1409; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; attic=auxExp; bioRep=gen0130WC; dccRep=1; geoSampleAccession=GSM605630; labProtocolId=gen0130WCs; origAssembly=hg18
      2010-10-14wgEncodeCshlShortRnaSeqK562CellShortAln.bam  41M  2010-01-14  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; labExpId=crg-31; subId=1409; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; attic=auxExp; bioRep=gen0130WC; dccRep=1; geoSampleAccession=GSM605630; labProtocolId=gen0130WCs; origAssembly=hg18
      2010-10-14wgEncodeCshlShortRnaSeqK562CellShortMinusRaw.bigWig  17M  2010-01-14  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; labExpId=crg-31; subId=1409; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0130WC; dccRep=1; geoSampleAccession=GSM605630; labProtocolId=gen0130WCs; origAssembly=hg18
      2010-10-14wgEncodeCshlShortRnaSeqK562CellShortPlusRaw.bigWig  17M  2010-01-14  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; labExpId=crg-31; subId=1409; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0130WC; dccRep=1; geoSampleAccession=GSM605630; labProtocolId=gen0130WCs; origAssembly=hg18
      2010-10-14wgEncodeCshlShortRnaSeqK562CellShortTransfrags.shortFrags.gz  1.9M  2010-01-14  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cell; labExpId=crg-31; subId=1965; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Transfrags; type=shortFrags; attic=auxExp; bioRep=gen0130WC; dccRep=1; geoSampleAccession=GSM605630; labProtocolId=gen0130WCs; origAssembly=hg18
      2011-10-19wgEncodeCshlShortRnaSeqK562ChromatinShorttotalAlnRep3.bam.bai  5.4M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=3; labExpId=LID8930; subId=3364; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=025CH; dccRep=1; labProtocolId=025CHs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562ChromatinShorttotalAlnRep3.bam  1.2G  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=3; labExpId=LID8930; subId=3364; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=025CH; dccRep=1; labProtocolId=025CHs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562ChromatinShorttotalMinusRawRep3.bigWig  14M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=3; labExpId=LID8930; subId=3364; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=025CH; dccRep=1; labProtocolId=025CHs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562ChromatinShorttotalPlusRawRep3.bigWig  14M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=3; labExpId=LID8930; subId=3364; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=025CH; dccRep=1; labProtocolId=025CHs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562ChromatinShorttotalRawDataRep3.fastq.gz  971M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=3; labExpId=LID8930; subId=3364; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=025CH; dccRep=1; labProtocolId=025CHs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqK562ChromatinShorttotalContigs.bedRnaElements.gz  14M  2011-03-31  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=3,4; labExpId=LID8930,LID18560; subId=3857; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=025CH,026CH; dccRep=Pooled; labProtocolId=025CHs,026CHs
      2011-10-19wgEncodeCshlShortRnaSeqK562ChromatinShorttotalAlnRep4.bam.bai  5.2M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=4; labExpId=LID18560; subId=3365; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=026CH; dccRep=2; labProtocolId=026CHs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562ChromatinShorttotalAlnRep4.bam  1.1G  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=4; labExpId=LID18560; subId=3365; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=026CH; dccRep=2; labProtocolId=026CHs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562ChromatinShorttotalMinusRawRep4.bigWig  10M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=4; labExpId=LID18560; subId=3365; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=026CH; dccRep=2; labProtocolId=026CHs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562ChromatinShorttotalPlusRawRep4.bigWig  11M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=4; labExpId=LID18560; subId=3365; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=026CH; dccRep=2; labProtocolId=026CHs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562ChromatinShorttotalRawDataRep4.fastq.gz  787M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; replicate=4; labExpId=LID18560; subId=3365; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=026CH; dccRep=2; labProtocolId=026CHs; origAssembly=hg19
      2010-06-23wgEncodeCshlShortRnaSeqK562ChromatinShortAln.bam.bai  5.4M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; labExpId=crg-32; subId=1405; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; attic=auxExp; bioRep=gen0133CH; dccRep=1; geoSampleAccession=GSM605632; labProtocolId=gen0133CHs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562ChromatinShortAln.bam  190M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; labExpId=crg-32; subId=1405; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; attic=auxExp; bioRep=gen0133CH; dccRep=1; geoSampleAccession=GSM605632; labProtocolId=gen0133CHs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562ChromatinShortMinusRaw.bigWig  174M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; labExpId=crg-32; subId=1405; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0133CH; dccRep=1; geoSampleAccession=GSM605632; labProtocolId=gen0133CHs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562ChromatinShortPlusRaw.bigWig  176M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; labExpId=crg-32; subId=1405; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0133CH; dccRep=1; geoSampleAccession=GSM605632; labProtocolId=gen0133CHs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562ChromatinShortTransfrags.shortFrags.gz  44M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; labExpId=crg-32; subId=1965; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-20; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Transfrags; type=shortFrags; attic=auxExp; bioRep=gen0133CH; dccRep=1; geoSampleAccession=GSM605632; labProtocolId=gen0133CHs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562ChromatinShortRawData.fastq.gz  1.7G  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=chromatin; labExpId=crg-32; subId=535; dataVersion=ENCODE Fall 2009 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; attic=auxExp; bioRep=gen0133CH; dccRep=1; geoSampleAccession=GSM605632; labProtocolId=gen0133CHs; origAssembly=hg18
      2011-10-18wgEncodeCshlShortRnaSeqK562CytosolShorttotalAlnRep1.bam.bai  5.1M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID10572; subId=3297; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=001C; dccRep=1; labProtocolId=001Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CytosolShorttotalAlnRep1.bam  862M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID10572; subId=3297; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=001C; dccRep=1; labProtocolId=001Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CytosolShorttotalMinusRawRep1.bigWig  4.3M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID10572; subId=3297; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=001C; dccRep=1; labProtocolId=001Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CytosolShorttotalPlusRawRep1.bigWig  4.3M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID10572; subId=3297; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=001C; dccRep=1; labProtocolId=001Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CytosolShorttotalRawDataRep1.fastq.gz  615M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=1; labExpId=LID10572; subId=3297; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=001C; dccRep=1; labProtocolId=001Cs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqK562CytosolShorttotalContigs.bedRnaElements.gz  407K  2011-03-31  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=1,2; labExpId=LID10572,LID10571; subId=3858; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=001C,002C; dccRep=Pooled; labProtocolId=001Cs,002Cs
      2011-10-18wgEncodeCshlShortRnaSeqK562CytosolShorttotalAlnRep2.bam.bai  4.9M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID10571; subId=3298; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=002C; dccRep=2; labProtocolId=002Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CytosolShorttotalAlnRep2.bam  849M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID10571; subId=3298; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=002C; dccRep=2; labProtocolId=002Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CytosolShorttotalMinusRawRep2.bigWig  3.7M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID10571; subId=3298; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=002C; dccRep=2; labProtocolId=002Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CytosolShorttotalPlusRawRep2.bigWig  3.6M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID10571; subId=3298; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=002C; dccRep=2; labProtocolId=002Cs; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562CytosolShorttotalRawDataRep2.fastq.gz  548M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; replicate=2; labExpId=LID10571; subId=3298; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=002C; dccRep=2; labProtocolId=002Cs; origAssembly=hg19
      2010-06-23wgEncodeCshlShortRnaSeqK562CytosolShortAln.bam.bai  4.8M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-36; subId=1406; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; attic=auxExp; bioRep=gen0142C; dccRep=1; geoSampleAccession=GSM605629; labProtocolId=gen0142Cs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562CytosolShortAln.bam  63M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-36; subId=1406; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; attic=auxExp; bioRep=gen0142C; dccRep=1; geoSampleAccession=GSM605629; labProtocolId=gen0142Cs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562CytosolShortMinusRaw.bigWig  22M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-36; subId=1406; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0142C; dccRep=1; geoSampleAccession=GSM605629; labProtocolId=gen0142Cs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562CytosolShortPlusRaw.bigWig  22M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-36; subId=1406; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0142C; dccRep=1; geoSampleAccession=GSM605629; labProtocolId=gen0142Cs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562CytosolShortTransfrags.shortFrags.gz  1.6M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-36; subId=1965; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-20; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Transfrags; type=shortFrags; attic=auxExp; bioRep=gen0142C; dccRep=1; geoSampleAccession=GSM605629; labProtocolId=gen0142Cs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562CytosolShortRawData.fastq.gz  905M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=cytosol; labExpId=crg-36; subId=535; dataVersion=ENCODE Fall 2009 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; attic=auxExp; bioRep=gen0142C; dccRep=1; geoSampleAccession=GSM605629; labProtocolId=gen0142Cs; origAssembly=hg18
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleolusShorttotalAlnRep3.bam.bai  4.9M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=3; labExpId=LID8928; subId=3366; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=025NL; dccRep=1; labProtocolId=025NLs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleolusShorttotalAlnRep3.bam  991M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=3; labExpId=LID8928; subId=3366; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=025NL; dccRep=1; labProtocolId=025NLs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleolusShorttotalMinusRawRep3.bigWig  3.9M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=3; labExpId=LID8928; subId=3366; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=025NL; dccRep=1; labProtocolId=025NLs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleolusShorttotalPlusRawRep3.bigWig  3.9M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=3; labExpId=LID8928; subId=3366; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=025NL; dccRep=1; labProtocolId=025NLs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleolusShorttotalRawDataRep3.fastq.gz  851M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=3; labExpId=LID8928; subId=3366; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=025NL; dccRep=1; labProtocolId=025NLs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqK562NucleolusShorttotalContigs.bedRnaElements.gz  2.5M  2011-03-31  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=3,4; labExpId=LID8928,LID18558; subId=3859; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=025NL,026NL; dccRep=Pooled; labProtocolId=025NLs,026NLs
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleolusShorttotalAlnRep4.bam.bai  4.7M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=4; labExpId=LID18558; subId=3367; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=026NL; dccRep=2; labProtocolId=026NLs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleolusShorttotalAlnRep4.bam  983M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=4; labExpId=LID18558; subId=3367; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=026NL; dccRep=2; labProtocolId=026NLs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleolusShorttotalMinusRawRep4.bigWig  3.9M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=4; labExpId=LID18558; subId=3367; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=026NL; dccRep=2; labProtocolId=026NLs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleolusShorttotalPlusRawRep4.bigWig  3.9M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=4; labExpId=LID18558; subId=3367; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=026NL; dccRep=2; labProtocolId=026NLs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleolusShorttotalRawDataRep4.fastq.gz  838M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; replicate=4; labExpId=LID18558; subId=3367; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=026NL; dccRep=2; labProtocolId=026NLs; origAssembly=hg19
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleolusShortAln.bam.bai  4.9M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; labExpId=crg-37; subId=1408; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; attic=auxExp; bioRep=gen0143NL; dccRep=1; geoSampleAccession=GSM605628; labProtocolId=gen0143NLs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleolusShortAln.bam  60M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; labExpId=crg-37; subId=1408; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; attic=auxExp; bioRep=gen0143NL; dccRep=1; geoSampleAccession=GSM605628; labProtocolId=gen0143NLs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleolusShortMinusRaw.bigWig  39M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; labExpId=crg-37; subId=1408; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0143NL; dccRep=1; geoSampleAccession=GSM605628; labProtocolId=gen0143NLs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleolusShortPlusRaw.bigWig  39M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; labExpId=crg-37; subId=1408; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0143NL; dccRep=1; geoSampleAccession=GSM605628; labProtocolId=gen0143NLs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleolusShortTransfrags.shortFrags.gz  6.0M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; labExpId=crg-37; subId=1965; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-20; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Transfrags; type=shortFrags; attic=auxExp; bioRep=gen0143NL; dccRep=1; geoSampleAccession=GSM605628; labProtocolId=gen0143NLs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleolusShortRawData.fastq.gz  1.1G  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleolus; labExpId=crg-37; subId=535; dataVersion=ENCODE Fall 2009 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; attic=auxExp; bioRep=gen0143NL; dccRep=1; geoSampleAccession=GSM605628; labProtocolId=gen0143NLs; origAssembly=hg18
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalAlnRep3.bam.bai  5.6M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=3; labExpId=LID8929; subId=3368; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=025NP; dccRep=1; labProtocolId=025NPs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalAlnRep3.bam  1.4G  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=3; labExpId=LID8929; subId=3368; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=025NP; dccRep=1; labProtocolId=025NPs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalMinusRawRep3.bigWig  34M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=3; labExpId=LID8929; subId=3368; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=025NP; dccRep=1; labProtocolId=025NPs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalPlusRawRep3.bigWig  34M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=3; labExpId=LID8929; subId=3368; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=025NP; dccRep=1; labProtocolId=025NPs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalRawDataRep3.fastq.gz  1.1G  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=3; labExpId=LID8929; subId=3368; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=025NP; dccRep=1; labProtocolId=025NPs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalContigs.bedRnaElements.gz  32M  2011-03-31  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=3,4; labExpId=LID8929,LID18559; subId=3860; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=025NP,026NP; dccRep=Pooled; labProtocolId=025NPs,026NPs
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalAlnRep4.bam.bai  5.6M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=4; labExpId=LID18559; subId=3369; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=026NP; dccRep=2; labProtocolId=026NPs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalAlnRep4.bam  1.4G  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=4; labExpId=LID18559; subId=3369; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=026NP; dccRep=2; labProtocolId=026NPs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalMinusRawRep4.bigWig  34M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=4; labExpId=LID18559; subId=3369; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=026NP; dccRep=2; labProtocolId=026NPs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalPlusRawRep4.bigWig  34M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=4; labExpId=LID18559; subId=3369; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=026NP; dccRep=2; labProtocolId=026NPs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqK562NucleoplasmShorttotalRawDataRep4.fastq.gz  978M  2011-01-19  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; replicate=4; labExpId=LID18559; subId=3369; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=026NP; dccRep=2; labProtocolId=026NPs; origAssembly=hg19
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleoplasmShortAln.bam.bai  5.7M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; labExpId=crg-39; subId=1411; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; attic=auxExp; bioRep=gen0146NP; dccRep=1; geoSampleAccession=GSM605634; labProtocolId=gen0146NPs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleoplasmShortAln.bam  554M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; labExpId=crg-39; subId=1411; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; attic=auxExp; bioRep=gen0146NP; dccRep=1; geoSampleAccession=GSM605634; labProtocolId=gen0146NPs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleoplasmShortMinusRaw.bigWig  436M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; labExpId=crg-39; subId=1411; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0146NP; dccRep=1; geoSampleAccession=GSM605634; labProtocolId=gen0146NPs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleoplasmShortPlusRaw.bigWig  446M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; labExpId=crg-39; subId=1411; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0146NP; dccRep=1; geoSampleAccession=GSM605634; labProtocolId=gen0146NPs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleoplasmShortTransfrags.shortFrags.gz  151M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; labExpId=crg-39; subId=1965; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-20; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Transfrags; type=shortFrags; attic=auxExp; bioRep=gen0146NP; dccRep=1; geoSampleAccession=GSM605634; labProtocolId=gen0146NPs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleoplasmShortRawData.fastq.gz  1.9G  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleoplasm; labExpId=crg-39; subId=535; dataVersion=ENCODE Fall 2009 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; attic=auxExp; bioRep=gen0146NP; dccRep=1; geoSampleAccession=GSM605634; labProtocolId=gen0146NPs; origAssembly=hg18
      2011-10-18wgEncodeCshlShortRnaSeqK562NucleusShorttotalAlnRep1.bam.bai  5.0M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID10570; subId=3299; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=001N; dccRep=1; labProtocolId=001Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562NucleusShorttotalAlnRep1.bam  782M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID10570; subId=3299; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=001N; dccRep=1; labProtocolId=001Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562NucleusShorttotalMinusRawRep1.bigWig  3.9M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID10570; subId=3299; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=001N; dccRep=1; labProtocolId=001Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562NucleusShorttotalPlusRawRep1.bigWig  3.9M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID10570; subId=3299; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=001N; dccRep=1; labProtocolId=001Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562NucleusShorttotalRawDataRep1.fastq.gz  808M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=1; labExpId=LID10570; subId=3299; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=001N; dccRep=1; labProtocolId=001Ns; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqK562NucleusShorttotalContigs.bedRnaElements.gz  692K  2011-03-31  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=1,2; labExpId=LID10570,LID10569; subId=3861; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=001N,002N; dccRep=Pooled; labProtocolId=001Ns,002Ns
      2011-10-18wgEncodeCshlShortRnaSeqK562NucleusShorttotalAlnRep2.bam.bai  5.0M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID10569; subId=3301; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=002N; dccRep=2; labProtocolId=002Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562NucleusShorttotalAlnRep2.bam  638M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID10569; subId=3301; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=002N; dccRep=2; labProtocolId=002Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562NucleusShorttotalMinusRawRep2.bigWig  4.0M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID10569; subId=3301; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=002N; dccRep=2; labProtocolId=002Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562NucleusShorttotalPlusRawRep2.bigWig  3.9M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID10569; subId=3301; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=002N; dccRep=2; labProtocolId=002Ns; origAssembly=hg19
      2011-10-18wgEncodeCshlShortRnaSeqK562NucleusShorttotalRawDataRep2.fastq.gz  667M  2011-01-18  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; replicate=2; labExpId=LID10569; subId=3301; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=002N; dccRep=2; labProtocolId=002Ns; origAssembly=hg19
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleusShortAln.bam.bai  3.6M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-42; subId=1407; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; attic=auxExp; bioRep=gen0151N; dccRep=1; geoSampleAccession=GSM605635; labProtocolId=gen0151Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleusShortAln.bam  32M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-42; subId=1407; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; attic=auxExp; bioRep=gen0151N; dccRep=1; geoSampleAccession=GSM605635; labProtocolId=gen0151Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleusShortMinusRaw.bigWig  11M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-42; subId=1407; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0151N; dccRep=1; geoSampleAccession=GSM605635; labProtocolId=gen0151Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleusShortPlusRaw.bigWig  11M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-42; subId=1407; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; attic=auxExp; bioRep=gen0151N; dccRep=1; geoSampleAccession=GSM605635; labProtocolId=gen0151Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleusShortTransfrags.shortFrags.gz  1.2M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-42; subId=1965; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-20; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Transfrags; type=shortFrags; attic=auxExp; bioRep=gen0151N; dccRep=1; geoSampleAccession=GSM605635; labProtocolId=gen0151Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562NucleusShortRawData.fastq.gz  391M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=nucleus; labExpId=crg-42; subId=535; dataVersion=ENCODE Fall 2009 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; attic=auxExp; bioRep=gen0151N; dccRep=1; geoSampleAccession=GSM605635; labProtocolId=gen0151Ns; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562PolysomeShortAln.bam.bai  2.4M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=polysome; labExpId=crg-44; subId=1410; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; bioRep=gen0154P; dccRep=1; geoSampleAccession=GSM605631; labProtocolId=gen0154Ps; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562PolysomeShortAln.bam  4.5M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=polysome; labExpId=crg-44; subId=1410; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; bioRep=gen0154P; dccRep=1; geoSampleAccession=GSM605631; labProtocolId=gen0154Ps; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562PolysomeShortMinusRaw.bigWig  4.5M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=polysome; labExpId=crg-44; subId=1410; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; bioRep=gen0154P; dccRep=1; geoSampleAccession=GSM605631; labProtocolId=gen0154Ps; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562PolysomeShortPlusRaw.bigWig  4.5M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=polysome; labExpId=crg-44; subId=1410; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-14; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; bioRep=gen0154P; dccRep=1; geoSampleAccession=GSM605631; labProtocolId=gen0154Ps; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562PolysomeShortTransfrags.shortFrags.gz  325K  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=polysome; labExpId=crg-44; subId=1965; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-20; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Transfrags; type=shortFrags; bioRep=gen0154P; dccRep=1; geoSampleAccession=GSM605631; labProtocolId=gen0154Ps; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqK562PolysomeShortRawData.fastq.gz  297M  2009-09-23  dataType=RnaSeq; cell=K562; rnaExtract=shortTotal; localization=polysome; labExpId=crg-44; subId=535; dataVersion=ENCODE Fall 2009 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; bioRep=gen0154P; dccRep=1; geoSampleAccession=GSM605631; labProtocolId=gen0154Ps; origAssembly=hg18
      2011-10-19wgEncodeCshlShortRnaSeqMcf7CellShorttotalAlnRep1.bam.bai  5.3M  2011-01-19  dataType=RnaSeq; cell=MCF-7; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20743; subId=3353; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=015WC; dccRep=1; labProtocolId=015WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqMcf7CellShorttotalAlnRep1.bam  692M  2011-01-19  dataType=RnaSeq; cell=MCF-7; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20743; subId=3353; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=015WC; dccRep=1; labProtocolId=015WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqMcf7CellShorttotalMinusRawRep1.bigWig  5.0M  2011-01-19  dataType=RnaSeq; cell=MCF-7; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20743; subId=3353; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=015WC; dccRep=1; labProtocolId=015WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqMcf7CellShorttotalPlusRawRep1.bigWig  4.9M  2011-01-19  dataType=RnaSeq; cell=MCF-7; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20743; subId=3353; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=015WC; dccRep=1; labProtocolId=015WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqMcf7CellShorttotalRawDataRep1.fastq.gz  650M  2011-01-19  dataType=RnaSeq; cell=MCF-7; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20743; subId=3353; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=015WC; dccRep=1; labProtocolId=015WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqMcf7CellShorttotalAlnRep2.bam.bai  5.3M  2011-01-19  dataType=RnaSeq; cell=MCF-7; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20744; subId=3370; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=016WC; dccRep=2; labProtocolId=016WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqMcf7CellShorttotalAlnRep2.bam  1.1G  2011-01-19  dataType=RnaSeq; cell=MCF-7; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20744; subId=3370; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=016WC; dccRep=2; labProtocolId=016WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqMcf7CellShorttotalMinusRawRep2.bigWig  5.0M  2011-01-19  dataType=RnaSeq; cell=MCF-7; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20744; subId=3370; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=016WC; dccRep=2; labProtocolId=016WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqMcf7CellShorttotalPlusRawRep2.bigWig  4.9M  2011-01-19  dataType=RnaSeq; cell=MCF-7; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20744; subId=3370; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=016WC; dccRep=2; labProtocolId=016WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqMcf7CellShorttotalRawDataRep2.fastq.gz  956M  2011-01-19  dataType=RnaSeq; cell=MCF-7; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20744; subId=3370; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=016WC; dccRep=2; labProtocolId=016WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCellShorttotalAlnRep1.bam.bai  5.2M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20999; subId=3371; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=007WC; dccRep=1; labProtocolId=007WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCellShorttotalAlnRep1.bam  1.3G  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20999; subId=3371; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=007WC; dccRep=1; labProtocolId=007WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCellShorttotalMinusRawRep1.bigWig  4.6M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20999; subId=3371; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=007WC; dccRep=1; labProtocolId=007WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCellShorttotalPlusRawRep1.bigWig  4.6M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20999; subId=3371; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=007WC; dccRep=1; labProtocolId=007WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCellShorttotalRawDataRep1.fastq.gz  946M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20999; subId=3371; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=007WC; dccRep=1; labProtocolId=007WCs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqNhekCellShorttotalContigs.bedRnaElements.gz  911K  2011-03-31  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=1,2; labExpId=LID20999,LID21000; subId=3865; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=007WC,008WC; dccRep=Pooled; labProtocolId=007WCs,008WCs
      2011-10-19wgEncodeCshlShortRnaSeqNhekCellShorttotalAlnRep2.bam.bai  5.2M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21000; subId=3372; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=008WC; dccRep=2; labProtocolId=008WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCellShorttotalAlnRep2.bam  1.1G  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21000; subId=3372; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=008WC; dccRep=2; labProtocolId=008WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCellShorttotalMinusRawRep2.bigWig  4.5M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21000; subId=3372; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=008WC; dccRep=2; labProtocolId=008WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCellShorttotalPlusRawRep2.bigWig  4.5M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21000; subId=3372; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=008WC; dccRep=2; labProtocolId=008WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCellShorttotalRawDataRep2.fastq.gz  770M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID21000; subId=3372; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=008WC; dccRep=2; labProtocolId=008WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCytosolShorttotalAlnRep3.bam.bai  5.1M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=3; labExpId=LID21002; subId=3373; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=027C; dccRep=1; labProtocolId=027Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCytosolShorttotalAlnRep3.bam  1.8G  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=3; labExpId=LID21002; subId=3373; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=027C; dccRep=1; labProtocolId=027Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCytosolShorttotalMinusRawRep3.bigWig  4.8M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=3; labExpId=LID21002; subId=3373; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=027C; dccRep=1; labProtocolId=027Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCytosolShorttotalPlusRawRep3.bigWig  4.8M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=3; labExpId=LID21002; subId=3373; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=027C; dccRep=1; labProtocolId=027Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCytosolShorttotalRawDataRep3.fastq.gz  1.1G  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=3; labExpId=LID21002; subId=3373; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=027C; dccRep=1; labProtocolId=027Cs; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqNhekCytosolShorttotalContigs.bedRnaElements.gz  913K  2011-03-31  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=3,4; labExpId=LID21002,LID21004; subId=3863; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=027C,028C; dccRep=Pooled; labProtocolId=027Cs,028Cs
      2011-10-19wgEncodeCshlShortRnaSeqNhekCytosolShorttotalAlnRep4.bam.bai  5.2M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=4; labExpId=LID21004; subId=3374; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=028C; dccRep=2; labProtocolId=028Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCytosolShorttotalAlnRep4.bam  1.6G  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=4; labExpId=LID21004; subId=3374; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=028C; dccRep=2; labProtocolId=028Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCytosolShorttotalMinusRawRep4.bigWig  5.0M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=4; labExpId=LID21004; subId=3374; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=028C; dccRep=2; labProtocolId=028Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCytosolShorttotalPlusRawRep4.bigWig  5.0M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=4; labExpId=LID21004; subId=3374; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=028C; dccRep=2; labProtocolId=028Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekCytosolShorttotalRawDataRep4.fastq.gz  1.1G  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=cytosol; replicate=4; labExpId=LID21004; subId=3374; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=028C; dccRep=2; labProtocolId=028Cs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekNucleusShorttotalAlnRep3.bam.bai  4.0M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=3; labExpId=LID21001; subId=3380; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=027N; dccRep=1; labProtocolId=027Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekNucleusShorttotalAlnRep3.bam  675M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=3; labExpId=LID21001; subId=3380; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=027N; dccRep=1; labProtocolId=027Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekNucleusShorttotalMinusRawRep3.bigWig  1.6M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=3; labExpId=LID21001; subId=3380; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=027N; dccRep=1; labProtocolId=027Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekNucleusShorttotalPlusRawRep3.bigWig  1.6M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=3; labExpId=LID21001; subId=3380; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=027N; dccRep=1; labProtocolId=027Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekNucleusShorttotalRawDataRep3.fastq.gz  769M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=3; labExpId=LID21001; subId=3380; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=027N; dccRep=1; labProtocolId=027Ns; origAssembly=hg19
      2011-12-31wgEncodeCshlShortRnaSeqNhekNucleusShorttotalContigs.bedRnaElements.gz  355K  2011-03-31  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=3,4; labExpId=LID21001,LID21003; subId=3864; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=027N,028N; dccRep=Pooled; labProtocolId=027Ns,028Ns
      2011-10-19wgEncodeCshlShortRnaSeqNhekNucleusShorttotalAlnRep4.bam.bai  4.5M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=4; labExpId=LID21003; subId=3375; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=028N; dccRep=2; labProtocolId=028Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekNucleusShorttotalAlnRep4.bam  817M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=4; labExpId=LID21003; subId=3375; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=028N; dccRep=2; labProtocolId=028Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekNucleusShorttotalMinusRawRep4.bigWig  2.0M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=4; labExpId=LID21003; subId=3375; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=028N; dccRep=2; labProtocolId=028Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekNucleusShorttotalPlusRawRep4.bigWig  1.9M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=4; labExpId=LID21003; subId=3375; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=028N; dccRep=2; labProtocolId=028Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqNhekNucleusShorttotalRawDataRep4.fastq.gz  898M  2011-01-19  dataType=RnaSeq; cell=NHEK; rnaExtract=shortTotal; localization=nucleus; replicate=4; labExpId=LID21003; subId=3375; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=028N; dccRep=2; labProtocolId=028Ns; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqSknshraCellShorttotalAlnRep1.bam.bai  5.3M  2011-01-19  dataType=RnaSeq; cell=SK-N-SH_RA; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20747; subId=3376; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=019WC; dccRep=1; labProtocolId=019WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqSknshraCellShorttotalAlnRep1.bam  1.3G  2011-01-19  dataType=RnaSeq; cell=SK-N-SH_RA; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20747; subId=3376; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=019WC; dccRep=1; labProtocolId=019WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqSknshraCellShorttotalMinusRawRep1.bigWig  5.1M  2011-01-19  dataType=RnaSeq; cell=SK-N-SH_RA; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20747; subId=3376; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=MinusRawSignal; type=bigWig; bioRep=019WC; dccRep=1; labProtocolId=019WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqSknshraCellShorttotalPlusRawRep1.bigWig  5.0M  2011-01-19  dataType=RnaSeq; cell=SK-N-SH_RA; rnaExtract=shortTotal; localization=cell; replicate=1; labExpId=LID20747; subId=3376; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=019WC; dccRep=1; labProtocolId=019WCs; origAssembly=hg19
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      2011-12-31wgEncodeCshlShortRnaSeqSknshraCellShorttotalContigs.bedRnaElements.gz  831K  2011-03-31  dataType=RnaSeq; cell=SK-N-SH_RA; rnaExtract=shortTotal; localization=cell; replicate=1,2; labExpId=LID20747,LID20748; subId=3866; dataVersion=post ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; labVersion=iIDR; view=Contigs; type=bedRnaElements; bioRep=019WC,020WC; dccRep=Pooled; labProtocolId=019WCs,020WCs
      2011-10-19wgEncodeCshlShortRnaSeqSknshraCellShorttotalAlnRep2.bam.bai  5.2M  2011-01-19  dataType=RnaSeq; cell=SK-N-SH_RA; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20748; subId=3377; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bai; bioRep=020WC; dccRep=2; labProtocolId=020WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqSknshraCellShorttotalAlnRep2.bam  1.2G  2011-01-19  dataType=RnaSeq; cell=SK-N-SH_RA; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20748; subId=3377; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=Alignments; type=bam; bioRep=020WC; dccRep=2; labProtocolId=020WCs; origAssembly=hg19
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      2011-10-19wgEncodeCshlShortRnaSeqSknshraCellShorttotalPlusRawRep2.bigWig  4.6M  2011-01-19  dataType=RnaSeq; cell=SK-N-SH_RA; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20748; subId=3377; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=PlusRawSignal; type=bigWig; bioRep=020WC; dccRep=2; labProtocolId=020WCs; origAssembly=hg19
      2011-10-19wgEncodeCshlShortRnaSeqSknshraCellShorttotalRawDataRep2.fastq.gz  924M  2011-01-19  dataType=RnaSeq; cell=SK-N-SH_RA; rnaExtract=shortTotal; localization=cell; replicate=2; labExpId=LID20748; subId=3377; dataVersion=ENCODE Jan 2011 Freeze; grant=Gingeras; lab=CSHL; view=RawData; type=fastq; bioRep=020WC; dccRep=2; labProtocolId=020WCs; origAssembly=hg19
      2010-06-23wgEncodeCshlShortRnaSeqProstateCellTotalAln.bam.bai  5.0M  2009-09-23  dataType=RnaSeq; cell=prostate; rnaExtract=shortTotal; localization=cell; labExpId=crg-61; subId=1837; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-06-30; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bai; bioRep=gen0161WC; dccRep=1; geoSampleAccession=GSM605626; labProtocolId=gen0161WCs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqProstateCellTotalAln.bam  98M  2009-09-23  dataType=RnaSeq; cell=prostate; rnaExtract=shortTotal; localization=cell; labExpId=crg-61; subId=1837; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-06-30; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Alignments; type=bam; bioRep=gen0161WC; dccRep=1; geoSampleAccession=GSM605626; labProtocolId=gen0161WCs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqProstateCellTotalMinusRaw.bigWig  31M  2009-09-23  dataType=RnaSeq; cell=prostate; rnaExtract=shortTotal; localization=cell; labExpId=crg-61; subId=1837; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-06-30; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=MinusRawSignal; type=bigWig; bioRep=gen0161WC; dccRep=1; geoSampleAccession=GSM605626; labProtocolId=gen0161WCs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqProstateCellTotalPlusRaw.bigWig  31M  2009-09-23  dataType=RnaSeq; cell=prostate; rnaExtract=shortTotal; localization=cell; labExpId=crg-61; subId=1837; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-06-30; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=PlusRawSignal; type=bigWig; bioRep=gen0161WC; dccRep=1; geoSampleAccession=GSM605626; labProtocolId=gen0161WCs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqProstateCellShortTransfrags.shortFrags.gz  3.7M  2009-09-23  dataType=RnaSeq; cell=prostate; rnaExtract=shortTotal; localization=cell; labExpId=crg-61; subId=1965; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-20; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=Transfrags; type=shortFrags; bioRep=gen0161WC; dccRep=1; geoSampleAccession=GSM605626; labProtocolId=gen0161WCs; origAssembly=hg18
      2010-06-23wgEncodeCshlShortRnaSeqProstateCellTotalRawData.fastq.gz  1.2G  2009-09-23  dataType=RnaSeq; cell=prostate; rnaExtract=shortTotal; localization=cell; labExpId=crg-61; subId=535; dataVersion=ENCODE Fall 2009 Freeze; grant=Gingeras; lab=CSHL; labVersion=Produced by Hannon Lab; view=RawData; type=fastq; bioRep=gen0161WC; dccRep=1; geoSampleAccession=GSM605626; labProtocolId=gen0161WCs; origAssembly=hg18
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