[DIR] Parent Directory

This directory contains data generated by the Bernstein/Broad lab as part of the ENCODE project. Further information is available in the Broad HMM track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:

  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		 File Size Submitted dataType cell expId subId type   Additional details
      2011-03-16wgEncodeBroadHmmGm12878HMM.bed.gz  5.3M  2011-03-16  CombinedGM128787843823beddataVersion=post ENCODE Jan 2011 Freeze; grant=Bernstein; lab=Broad; softwareVersion=ChromHMM_ENCODEDynamicsPaper; view=HMM; dccAccession=wgEncodeEH000784; origAssembly=hg18
      2011-03-16wgEncodeBroadHmmH1hescHMM.bed.gz  5.7M  2011-03-16  CombinedH1-hESC7853823beddataVersion=post ENCODE Jan 2011 Freeze; grant=Bernstein; lab=Broad; softwareVersion=ChromHMM_ENCODEDynamicsPaper; view=HMM; dccAccession=wgEncodeEH000785; origAssembly=hg18
      2011-03-16wgEncodeBroadHmmHmecHMM.bed.gz  5.7M  2011-03-16  CombinedHMEC7863823beddataVersion=post ENCODE Jan 2011 Freeze; grant=Bernstein; lab=Broad; softwareVersion=ChromHMM_ENCODEDynamicsPaper; view=HMM; dccAccession=wgEncodeEH000786; origAssembly=hg18
      2011-03-16wgEncodeBroadHmmHsmmHMM.bed.gz  6.0M  2011-03-16  CombinedHSMM7873823beddataVersion=post ENCODE Jan 2011 Freeze; grant=Bernstein; lab=Broad; softwareVersion=ChromHMM_ENCODEDynamicsPaper; view=HMM; dccAccession=wgEncodeEH000787; origAssembly=hg18
      2011-03-16wgEncodeBroadHmmHuvecHMM.bed.gz  5.2M  2011-03-16  CombinedHUVEC7883823beddataVersion=post ENCODE Jan 2011 Freeze; grant=Bernstein; lab=Broad; softwareVersion=ChromHMM_ENCODEDynamicsPaper; view=HMM; dccAccession=wgEncodeEH000788; origAssembly=hg18
      2011-03-16wgEncodeBroadHmmHepg2HMM.bed.gz  5.1M  2011-03-16  CombinedHepG27893823beddataVersion=post ENCODE Jan 2011 Freeze; grant=Bernstein; lab=Broad; softwareVersion=ChromHMM_ENCODEDynamicsPaper; view=HMM; dccAccession=wgEncodeEH000789; origAssembly=hg18
      2011-03-16wgEncodeBroadHmmK562HMM.bed.gz  5.8M  2011-03-16  CombinedK5627903823beddataVersion=post ENCODE Jan 2011 Freeze; grant=Bernstein; lab=Broad; softwareVersion=ChromHMM_ENCODEDynamicsPaper; view=HMM; dccAccession=wgEncodeEH000790; origAssembly=hg18
      2011-03-16wgEncodeBroadHmmNhekHMM.bed.gz  5.9M  2011-03-16  CombinedNHEK7913823beddataVersion=post ENCODE Jan 2011 Freeze; grant=Bernstein; lab=Broad; softwareVersion=ChromHMM_ENCODEDynamicsPaper; view=HMM; dccAccession=wgEncodeEH000791; origAssembly=hg18
      2011-03-16wgEncodeBroadHmmNhlfHMM.bed.gz  6.0M  2011-03-16  CombinedNHLF7923823beddataVersion=post ENCODE Jan 2011 Freeze; grant=Bernstein; lab=Broad; softwareVersion=ChromHMM_ENCODEDynamicPaper; view=HMM; dccAccession=wgEncodeEH000792; origAssembly=hg18
    9 files