This directory contains reciprocal-best netted chains for hg18-gorGor4.

 - hg18.gorGor4.rbest.net.gz: hg18-referenced recip.best net to gorGor4.
 - hg18.gorGor4.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from hg18 to gorGor4 through the recip.best net.

 - gorGor4.hg18.rbest.net.gz: gorGor4-referenced recip.best net.
 - gorGor4.hg18.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.hg18.gorGor4.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html