[DIR] Parent Directory

This directory contains data generated by the Myers/HudsonAlpha lab as part of the ENCODE project. Further information is available in the HudsonAlpha RnaSeq track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:

  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2010-10-06wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Dexa.bed12.gz  1.9M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL330; softwareVersion=MACS; mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Dexa; readType=1x36
      2010-10-06wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Dexa.tagAlign.gz  135M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL330; mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Dexa; readType=1x36
      2010-10-06wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Dexa.bed12.gz  1.9M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL332; softwareVersion=MACS; mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Dexa; readType=1x36
      2010-10-06wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Dexa.tagAlign.gz  140M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=DEX_100nM; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL332; mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Dexa; readType=1x36
      2010-10-06wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Etoh02.tagAlign.gz  127M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL331 (Control); mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep1A549CellPapErng3R1x36Etoh02; readType=1x36
      2010-10-06wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Etoh02.bed12.gz  1.9M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=1; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL331 (Control); mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep1A549CellPapErng3R1x36Etoh02; readType=1x36
      2010-10-06wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Etoh02.tagAlign.gz  133M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL333 (Control); mapAlgorithm=erng3; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep2A549CellPapErng3R1x36Etoh02; readType=1x36
      2010-10-06wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Etoh02.bed12.gz  1.9M  2010-01-07  dataType=RnaSeq; cell=A549; rnaExtract=longPolyA; localization=cell; treatment=EtOH_0.02pct; replicate=2; subId=902; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL333 (Control); mapAlgorithm=erng3; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep2A549CellPapErng3R1x36Etoh02; readType=1x36
      2010-10-15wgEncodeHudsonalphaRnaSeqAlignsRep1JurkatCellPapBow10R1x25.tagAlign.gz  106M  2010-01-16  dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=1; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL316; mapAlgorithm=bow10; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep1JurkatCellPapBow10R1x25; readType=1x25
      2010-10-15wgEncodeHudsonalphaRnaSeqRPKMRep1JurkatCellPapBow10R1x25.bed12.gz  1.9M  2010-01-16  dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=1; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL316; mapAlgorithm=bow10; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep1JurkatCellPapBow10R1x25; readType=1x25
      2010-10-15wgEncodeHudsonalphaRnaSeqAlignsRep2JurkatCellPapBow10R1x25.tagAlign.gz  92M  2010-01-16  dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=2; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL317; mapAlgorithm=bow10; view=Aligns; type=bigBed; tableName=wgEncodeHudsonalphaRnaSeqAlignsRep2JurkatCellPapBow10R1x25; readType=1x25
      2010-10-15wgEncodeHudsonalphaRnaSeqRPKMRep2JurkatCellPapBow10R1x25.bed12.gz  1.9M  2010-01-16  dataType=RnaSeq; cell=Jurkat; rnaExtract=longPolyA; localization=cell; treatment=None; replicate=2; subId=1084; dataVersion=ENCODE Jan 2010 Freeze; grant=Myers; lab=HudsonAlpha; labVersion=SL317; mapAlgorithm=bow10; view=RPKM; type=bed; tableName=wgEncodeHudsonalphaRnaSeqRPKMRep2JurkatCellPapBow10R1x25; readType=1x25
    12 files