[DIR] Parent Directory

This directory contains data generated by the Gingeras/Gis lab as part of the ENCODE project.

Further information is available in the GIS PET RNAtrack description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

RESTRICTED
until		  FileSizeSubmitted  Details
  2009-11-17wgEncodeGisPetAlignmentsGm12878CytosolLongpolya.pairedTagAlign.gz  50M  2009-02-17  cell=GM12878; dataType=Pet; rnaExtract=longPolyA; localization=cytosol; lab=Gis; type=bed; view=Alignments; subId=211; grant=Gingeras; accession=SAT2G_version_2.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeGisPetAlignmentsGm12878CytosolLongpolya
  2009-11-17wgEncodeGisPetRawDataGm12878CytosolLongpolya.fastq.gz  2.5G  2009-02-17  cell=GM12878; dataType=Pet; rnaExtract=longPolyA; localization=cytosol; lab=Gis; type=fastq; view=RawData; subId=211; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeGisPetRawSignalGm12878CytosolLongpolya
  2009-11-16wgEncodeGisPetAlignmentsGm12878NucleusLongpolya.pairedTagAlign.gz  73M  2009-02-16  cell=GM12878; dataType=Pet; rnaExtract=longPolyA; localization=nucleus; lab=Gis; type=bed; view=Alignments; subId=210; grant=Gingeras; accession=SAT2G_version_2.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeGisPetAlignmentsGm12878NucleusLongpolya
  2009-11-16wgEncodeGisPetRawDataGm12878NucleusLongpolya.fastq.gz  2.3G  2009-02-16  cell=GM12878; dataType=Pet; rnaExtract=longPolyA; localization=nucleus; lab=Gis; type=fastq; view=RawData; subId=210; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeGisPetRawSignalGm12878NucleusLongpolya
  2010-04-03wgEncodeGisPetAlignmentsHepg2CytosolLongpolya.pairedTagAlign.gz  25M  2009-07-03  cell=HepG2; dataType=Pet; rnaExtract=longPolyA; localization=cytosol; lab=Gis; type=bed; view=Alignments; subId=412; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeGisPetAlignmentsHepg2CytosolLongpolya
  2010-04-03wgEncodeGisPetAlignmentsHepg2NucleusLongpolya.pairedTagAlign.gz  35M  2009-07-03  cell=HepG2; dataType=Pet; rnaExtract=longPolyA; localization=nucleus; lab=Gis; type=bed; view=Alignments; subId=413; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeGisPetAlignmentsHepg2NucleusLongpolya
  2010-04-02wgEncodeGisPetAlignmentsK562ChromatinLongpolya.pairedTagAlign.gz  5.0M  2009-07-02  cell=K562; dataType=Pet; rnaExtract=longPolyA; localization=chromatin; lab=Gis; type=bed; view=Alignments; subId=409; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeGisPetAlignmentsK562ChromatinLongpolya
  2009-12-17wgEncodeGisPetAlignmentsK562CytosolLongpolya.pairedTagAlign.gz  125M  2009-03-17  cell=K562; dataType=Pet; rnaExtract=longPolyA; localization=cytosol; lab=Gis; type=bed; view=Alignments; subId=105; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeGisPetAlignmentsK562CytosolLongpolya
  2009-12-17wgEncodeGisPetRawDataK562CytosolLongpolya.fastq.gz  175M  2009-03-17  cell=K562; dataType=Pet; rnaExtract=longPolyA; localization=cytosol; lab=Gis; type=fastq; view=RawData; subId=105; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeGisPetRawSignalK562CytosolLongpolya
  2010-04-02wgEncodeGisPetAlignmentsK562NucleolusLongpolya.pairedTagAlign.gz  7.7M  2009-07-02  cell=K562; dataType=Pet; rnaExtract=longPolyA; localization=nucleolus; lab=Gis; type=bed; view=Alignments; subId=411; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeGisPetAlignmentsK562NucleolusLongpolya
  2010-04-02wgEncodeGisPetAlignmentsK562NucleoplasmLongpolya.pairedTagAlign.gz  194K  2009-07-02  cell=K562; dataType=Pet; rnaExtract=longPolyA; localization=nucleoplasm; lab=Gis; type=bed; view=Alignments; subId=410; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeGisPetAlignmentsK562NucleoplasmLongpolya
  2009-12-17wgEncodeGisPetAlignmentsK562NucleusLongpolya.pairedTagAlign.gz  26M  2009-03-17  cell=K562; dataType=Pet; rnaExtract=longPolyA; localization=nucleus; lab=Gis; type=bed; view=Alignments; subId=105; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeGisPetAlignmentsK562NucleusLongpolya
  2009-12-17wgEncodeGisPetRawDataK562NucleusLongpolya.fastq.gz  1.2G  2009-03-17  cell=K562; dataType=Pet; rnaExtract=longPolyA; localization=nucleus; lab=Gis; type=fastq; view=RawData; subId=105; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeGisPetRawSignalK562NucleusLongpolya
  2009-12-17wgEncodeGisPetAlignmentsK562PolysomeLongpolya.pairedTagAlign.gz  57M  2009-03-17  cell=K562; dataType=Pet; rnaExtract=longPolyA; localization=polysome; lab=Gis; type=bed; view=Alignments; subId=105; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeGisPetAlignmentsK562PolysomeLongpolya
  2009-12-17wgEncodeGisPetRawDataK562PolysomeLongpolya.fastq.gz  4.2G  2009-03-17  cell=K562; dataType=Pet; rnaExtract=longPolyA; localization=polysome; lab=Gis; type=fastq; view=RawData; subId=105; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeGisPetRawSignalK562PolysomeLongpolya
  2009-12-11wgEncodeGisPetRawDataK562NucleolusTotal.fastq.gz  465M  2009-03-11  cell=K562; dataType=Pet; rnaExtract=total; localization=nucleolus; lab=Gis; type=fastq; view=RawData; subId=252; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeGisPetRawSignalK562NucleolusTotal
  2009-12-17wgEncodeGisPetAlignmentsProstateCellLongpolya.pairedTagAlign.gz  20M  2009-03-17  cell=prostate; dataType=Pet; rnaExtract=longPolyA; localization=cell; lab=Gis; type=bed; view=Alignments; subId=105; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeGisPetAlignmentsProstateCellLongpolya
  2009-12-17wgEncodeGisPetRawDataProstateCellLongpolya.fastq.gz  233M  2009-03-17  cell=prostate; dataType=Pet; rnaExtract=longPolyA; localization=cell; lab=Gis; type=fastq; view=RawData; subId=105; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeGisPetRawSignalProstateCellLongpolya
  2009-12-16mjp_del_wgEncodeGisPetAlignmentsGm12878CytosolLongpolya.pairedTagAlign.gz  56M  2009-03-16  type=pairedTagAlign
  2009-12-16mjp_del_wgEncodeGisPetAlignmentsGm12878NucleusLongpolya.pairedTagAlign.gz  75M  2009-03-16  type=pairedTagAlign
  2010-01-03mjp_del_wgEncodeGisPetAlignmentsK562CytosolLongpolya.pairedTagAlign.gz  30M  2009-04-03  type=pairedTagAlign
  2009-12-16mjp_del_wgEncodeGisPetAlignmentsK562NucleolusTotal.pairedTagAlign.gz  23M  2009-03-16  type=pairedTagAlign
  2010-01-03mjp_del_wgEncodeGisPetAlignmentsK562NucleusLongpolya.pairedTagAlign.gz  30M  2009-04-03  type=pairedTagAlign
  2010-01-03mjp_del_wgEncodeGisPetAlignmentsK562PolysomeLongpolya.pairedTagAlign.gz  56M  2009-04-03  type=pairedTagAlign
  2010-01-03mjp_del_wgEncodeGisPetAlignmentsProstateCellLongpolya.pairedTagAlign.gz  23M  2009-04-03  type=pairedTagAlign
  2010-04-14wgEncodeGisPetRawDataHepg2CytosolLongpolya.fastq.gz  1.1G  2009-07-14  type=fastq
  2010-04-14wgEncodeGisPetRawDataHepg2NucleusLongpolya.fastq.gz  1.4G  2009-07-14  type=fastq
  2010-04-14wgEncodeGisPetRawDataK562ChromatinLongpolya.fastq.gz  227M  2009-07-14  type=fastq
  2010-04-14wgEncodeGisPetRawDataK562NucleolusLongpolya.fastq.gz  357M  2009-07-14  type=fastq
  2010-04-14wgEncodeGisPetRawDataK562NucleoplasmLongpolya.fastq.gz  72M  2009-07-14  type=fastq