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Parent DirectoryThis directory contains data generated by the Gingeras/Cshl lab as part of the ENCODE project.
Further information is available in the CSHL Short RNA track description.Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.
| RESTRICTED until | File | Size | Submitted | Details |
|---|---|---|---|---|
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsGm12878CytosolShort.tagAlign.gz | 612M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=bigBed; view=Alignments; subId=222; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsGm12878CytosolShort |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsGm12878CytosolShort.broadPeak.gz | 218M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=broadPeak; view=Transfrags; subId=222; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsGm12878CytosolShort |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataGm12878CytosolShort.fastq.gz | 716M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=fastq; view=RawData; subId=222; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalGm12878CytosolShort |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsGm12878NucleusShort.tagAlign.gz | 147M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=bigBed; view=Alignments; subId=223; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsGm12878NucleusShort |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsGm12878NucleusShort.broadPeak.gz | 50M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=broadPeak; view=Transfrags; subId=223; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsGm12878NucleusShort |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataGm12878NucleusShort.fastq.gz | 1.1G | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=fastq; view=RawData; subId=223; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalGm12878NucleusShort |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsGm12878CytosolShortdeplrrna.tagAlign.gz | 70M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=shortDeplRrna; localization=cytosol; lab=Cshl; type=bigBed; view=Alignments; subId=222; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsGm12878CytosolShortdeplrrna |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsGm12878CytosolShortdeplrrna.broadPeak.gz | 28M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=shortDeplRrna; localization=cytosol; lab=Cshl; type=broadPeak; view=Transfrags; subId=222; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsGm12878CytosolShortdeplrrna |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataGm12878CytosolShortdeplrrna.fastq.gz | 294M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=shortDeplRrna; localization=cytosol; lab=Cshl; type=fastq; view=RawData; subId=222; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalGm12878CytosolShortdeplrrna |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsGm12878NucleusShortdeplrrna.tagAlign.gz | 31M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=shortDeplRrna; localization=nucleus; lab=Cshl; type=bigBed; view=Alignments; subId=223; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsGm12878NucleusShortdeplrrna |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsGm12878NucleusShortdeplrrna.broadPeak.gz | 9.3M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=shortDeplRrna; localization=nucleus; lab=Cshl; type=broadPeak; view=Transfrags; subId=223; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsGm12878NucleusShortdeplrrna |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataGm12878NucleusShortdeplrrna.fastq.gz | 188M | 2009-03-10 | cell=GM12878; dataType=RnaSeq; rnaExtract=shortDeplRrna; localization=nucleus; lab=Cshl; type=fastq; view=RawData; subId=223; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalGm12878NucleusShortdeplrrna |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsK562ChromatinShort.tagAlign.gz | 1.2G | 2009-04-08 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=chromatin; lab=Cshl; type=bigBed; view=Alignments; subId=215; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsK562ChromatinShort |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsK562CytosolShort.tagAlign.gz | 15M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=bigBed; view=Alignments; subId=216; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsK562CytosolShort |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsK562CytosolShort.broadPeak.gz | 2.1M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=broadPeak; view=Transfrags; subId=216; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsK562CytosolShort |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataK562CytosolShort.fastq.gz | 360M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=cytosol; lab=Cshl; type=fastq; view=RawData; subId=216; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalK562CytosolShort |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsK562NucleolusShort.tagAlign.gz | 516M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=nucleolus; lab=Cshl; type=bigBed; view=Alignments; subId=217; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsK562NucleolusShort |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsK562NucleolusShort.broadPeak.gz | 117M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=nucleolus; lab=Cshl; type=broadPeak; view=Transfrags; subId=217; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsK562NucleolusShort |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataK562NucleolusShort.fastq.gz | 1.1G | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=nucleolus; lab=Cshl; type=fastq; view=RawData; subId=217; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalK562NucleolusShort |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsK562NucleoplasmShort.tagAlign.gz | 4.0G | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=nucleoplasm; lab=Cshl; type=bigBed; view=Alignments; subId=219; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsK562NucleoplasmShort |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsK562NucleoplasmShort.broadPeak.gz | 1021M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=nucleoplasm; lab=Cshl; type=broadPeak; view=Transfrags; subId=219; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsK562NucleoplasmShort |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataK562NucleoplasmShort.fastq.gz | 1.9G | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=nucleoplasm; lab=Cshl; type=fastq; view=RawData; subId=219; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalK562NucleoplasmShort |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsK562NucleusShort.tagAlign.gz | 138M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=bigBed; view=Alignments; subId=218; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsK562NucleusShort |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsK562NucleusShort.broadPeak.gz | 40M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=broadPeak; view=Transfrags; subId=218; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsK562NucleusShort |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataK562NucleusShort.fastq.gz | 289M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=nucleus; lab=Cshl; type=fastq; view=RawData; subId=218; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalK562NucleusShort |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsK562PolysomeShort.tagAlign.gz | 31M | 2009-03-16 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=polysome; lab=Cshl; type=bigBed; view=Alignments; subId=220; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsK562PolysomeShort |
| 2009-12-16 | wgEncodeCshlRnaSeqTransfragsK562PolysomeShort.broadPeak.gz | 15M | 2009-03-16 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=polysome; lab=Cshl; type=broadPeak; view=Transfrags; subId=220; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsK562PolysomeShort |
| 2009-12-16 | wgEncodeCshlRnaSeqRawDataK562PolysomeShort.fastq.gz | 903M | 2009-03-16 | cell=K562; dataType=RnaSeq; rnaExtract=short; localization=polysome; lab=Cshl; type=fastq; view=RawData; subId=220; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalK562PolysomeShort |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsK562CytosolShort1940.tagAlign.gz | 361M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short19-40; localization=cytosol; lab=Cshl; type=bigBed; view=Alignments; subId=216; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsK562CytosolShort1940 |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsK562CytosolShort1940.broadPeak.gz | 157M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short19-40; localization=cytosol; lab=Cshl; type=broadPeak; view=Transfrags; subId=216; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsK562CytosolShort1940 |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataK562CytosolShort1940.fastq.gz | 376M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short19-40; localization=cytosol; lab=Cshl; type=fastq; view=RawData; subId=216; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalK562CytosolShort1940 |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsK562CytosolShort4060.tagAlign.gz | 32M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short40-60; localization=cytosol; lab=Cshl; type=bigBed; view=Alignments; subId=216; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsK562CytosolShort4060 |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsK562CytosolShort4060.broadPeak.gz | 14M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short40-60; localization=cytosol; lab=Cshl; type=broadPeak; view=Transfrags; subId=216; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsK562CytosolShort4060 |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataK562CytosolShort4060.fastq.gz | 27M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short40-60; localization=cytosol; lab=Cshl; type=fastq; view=RawData; subId=216; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalK562CytosolShort4060 |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsK562CytosolShort60200.tagAlign.gz | 9.0M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short60-200; localization=cytosol; lab=Cshl; type=bigBed; view=Alignments; subId=216; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsK562CytosolShort60200 |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsK562CytosolShort60200.broadPeak.gz | 2.4M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short60-200; localization=cytosol; lab=Cshl; type=broadPeak; view=Transfrags; subId=216; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsK562CytosolShort60200 |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataK562CytosolShort60200.fastq.gz | 47M | 2009-03-10 | cell=K562; dataType=RnaSeq; rnaExtract=short60-200; localization=cytosol; lab=Cshl; type=fastq; view=RawData; subId=216; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalK562CytosolShort60200 |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsProstateCellShort.tagAlign.gz | 26M | 2009-03-10 | cell=prostate; dataType=RnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=bigBed; view=Alignments; subId=221; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsProstateCellShort |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsProstateCellShort.broadPeak.gz | 9.7M | 2009-03-10 | cell=prostate; dataType=RnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=broadPeak; view=Transfrags; subId=221; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsProstateCellShort |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataProstateCellShort.fastq.gz | 64M | 2009-03-10 | cell=prostate; dataType=RnaSeq; rnaExtract=short; localization=cell; lab=Cshl; type=fastq; view=RawData; subId=221; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalProstateCellShort |
| 2010-01-16 | wgEncodeCshlRnaSeqAlignmentsProstateCellShortdeplrrna.tagAlign.gz | 192M | 2009-03-10 | cell=prostate; dataType=RnaSeq; rnaExtract=shortDeplRrna; localization=cell; lab=Cshl; type=bigBed; view=Alignments; subId=221; grant=Gingeras; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeCshlRnaSeqAlignmentsProstateCellShortdeplrrna |
| 2009-12-10 | wgEncodeCshlRnaSeqTransfragsProstateCellShortdeplrrna.broadPeak.gz | 80M | 2009-03-10 | cell=prostate; dataType=RnaSeq; rnaExtract=shortDeplRrna; localization=cell; lab=Cshl; type=broadPeak; view=Transfrags; subId=221; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeCshlRnaSeqTransfragsProstateCellShortdeplrrna |
| 2009-12-10 | wgEncodeCshlRnaSeqRawDataProstateCellShortdeplrrna.fastq.gz | 1.3G | 2009-03-10 | cell=prostate; dataType=RnaSeq; rnaExtract=shortDeplRrna; localization=cell; lab=Cshl; type=fastq; view=RawData; subId=221; grant=Gingeras; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeCshlRnaSeqRawSignalProstateCellShortdeplrrna |
| 2009-12-14 | wgEncodeCshlRnaSeqRawDataK562ChromatinShort.fastq.gz | 1.7G | 2009-03-14 | type=fastq |
| 2009-12-14 | wgEncodeCshlRnaSeqTransfragsK562ChromatinShort.broadPeak.gz | 368M | 2009-03-14 | type=broadPeak |