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Parent DirectoryThis directory contains data generated for the ENCODE Open Chromatin Map by the Crawford/Duke, Leib/UNC and Iyer/UT-Austin labs. Further information is available in the Open Chromatin track description.
Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.
NOTE: There are currently no FAIRE-seq peaks called on chrY for cell HepG2. There may be an update in the near future to correct this.
| RESTRICTED until | File | Size | Submitted | Details |
|---|---|---|---|---|
| 2009-11-24 | wgEncodeUtaChIPseqRawDataRep1Gm12878Ctcf.fastq.gz | 342M | 2009-02-24 | cell=GM12878; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=fastq; view=RawData; replicate=1; subId=228; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf |
| 2009-11-24 | wgEncodeUtaChIPseqRawDataRep2Gm12878Ctcf.fastq.gz | 863M | 2009-02-24 | cell=GM12878; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=fastq; view=RawData; replicate=2; subId=228; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf |
| 2009-11-24 | wgEncodeUtaChIPseqRawDataRep3Gm12878Ctcf.fastq.gz | 490M | 2009-02-24 | cell=GM12878; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=fastq; view=RawData; replicate=3; subId=228; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf |
| 2009-12-20 | wgEncodeUtaChIPseqPeaksGm12878Ctcf.narrowPeak.gz | 1.3M | 2009-03-20 | cell=GM12878; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=narrowPeak; view=Peaks; subId=278; grant=Crawford; labVersion=F-Seq 1.81, ROC aalysis; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqPeaksGm12878Ctcf |
| 2009-11-24 | wgEncodeUtaChIPseqAlignmentsRep1Gm12878Ctcf.tagAlign.gz | 123M | 2009-02-24 | cell=GM12878; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=tagAlign; view=Alignments; replicate=1; subId=228; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf |
| 2009-11-24 | wgEncodeUtaChIPseqAlignmentsRep2Gm12878Ctcf.tagAlign.gz | 209M | 2009-02-24 | cell=GM12878; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=tagAlign; view=Alignments; replicate=2; subId=228; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf |
| 2009-11-24 | wgEncodeUtaChIPseqAlignmentsRep3Gm12878Ctcf.tagAlign.gz | 206M | 2009-02-24 | cell=GM12878; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=tagAlign; view=Alignments; replicate=3; subId=228; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf |
| 2009-11-24 | wgEncodeUtaChIPseqBaseOverlapSignalGm12878Ctcf.wig.gz | 101M | 2009-02-24 | cell=GM12878; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=wig; view=Base_Overlap_Signal; subId=228; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqBaseOverlapSignalGm12878Ctcf |
| 2009-11-24 | wgEncodeUtaChIPseqSignalGm12878Ctcf.wig.gz | 1018M | 2009-02-24 | cell=GM12878; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=wig; view=Signal; subId=228; grant=Crawford; labVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqSignalGm12878Ctcf |
| 2009-07-07 | wgEncodeUtaustinChIPseqRawDataGm12878Input.fastq.gz | 538M | 2008-11-07 | cell=GM12878; dataType=ChIPseq; antibody=Input; lab=UT-A; type=fastq; view=RawData; subId=34; grant=Crawford; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeUtaustinChIPseqRawSignalGm12878Input |
| 2009-07-07 | wgEncodeUtaustinChIPseqAlignmentsGm12878Input.tagAlign.gz | 274M | 2008-11-07 | cell=GM12878; dataType=ChIPseq; antibody=Input; lab=UT-A; type=tagAlign; view=Alignments; subId=34; grant=Crawford; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeUtaustinChIPseqRawSignalGm12878Input |
| 2009-07-07 | wgEncodeUtaustinChIPseqSignalGm12878Input.wig.gz | 1.1G | 2008-11-07 | cell=GM12878; dataType=ChIPseq; antibody=Input; lab=UT-A; type=wig; view=Signal; subId=34; grant=Crawford; labVersion=1.0; dataVersion=ENCODE Nov 2008 Freeze; tableName=wgEncodeUtaustinChIPseqSignalGm12878Input |
| 2009-08-11 | wgEncodeDukeDNaseSeqRawDataRep1Gm12878.fastq.gz | 215M | 2008-12-11 | cell=GM12878; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=1; subId=131; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep1Gm12878 |
| 2009-08-11 | wgEncodeDukeDNaseSeqRawDataRep2Gm12878.fastq.gz | 237M | 2008-12-11 | cell=GM12878; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=2; subId=131; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep2Gm12878 |
| 2009-08-11 | wgEncodeDukeDNaseSeqRawDataRep3Gm12878.fastq.gz | 1.4G | 2008-12-11 | cell=GM12878; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=3; subId=131; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep3Gm12878 |
| 2009-12-20 | wgEncodeDukeDNaseSeqPeaksGm12878.narrowPeak.gz | 1.7M | 2009-03-20 | cell=GM12878; dataType=DNaseSeq; lab=Duke; type=narrowPeak; view=Peaks; subId=277; grant=Crawford; labVersion=F-Seq 1.81, ROC score; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqPeaksGm12878 |
| 2009-08-08 | wgEncodeDukeDNaseSeqAlignmentsRep1Gm12878.tagAlign.gz | 154M | 2008-11-08 | cell=GM12878; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=1; subId=31; grant=Crawford; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep1Gm12878 |
| 2009-08-08 | wgEncodeDukeDNaseSeqAlignmentsRep2Gm12878.tagAlign.gz | 202M | 2008-11-08 | cell=GM12878; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=2; subId=31; grant=Crawford; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep2Gm12878 |
| 2009-08-08 | wgEncodeDukeDNaseSeqAlignmentsRep3Gm12878.tagAlign.gz | 609M | 2008-11-08 | cell=GM12878; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=3; subId=31; grant=Crawford; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep3Gm12878 |
| 2009-11-27 | wgEncodeDukeDNaseSeqBaseOverlapSignalGm12878.wig.gz | 127M | 2009-02-27 | cell=GM12878; dataType=DNaseSeq; lab=Duke; type=wig; view=Base_Overlap_Signal; subId=258; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqBaseOverlapSignalGm12878 |
| 2009-11-27 | wgEncodeDukeDNaseSeqSignalGm12878.wig.gz | 1.2G | 2009-02-27 | cell=GM12878; dataType=DNaseSeq; lab=Duke; type=wig; view=Signal; subId=258; grant=Crawford; labVersion=F-Seq 1.81, average reps, pipeline 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqSignalGm12878 |
| 2009-11-25 | wgEncodeUncFAIREseqRawDataRep1Gm12878.fastq.gz | 1017M | 2009-02-25 | cell=GM12878; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=1; subId=231; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep1Gm12878 |
| 2009-11-25 | wgEncodeUncFAIREseqRawDataRep2Gm12878.fastq.gz | 1.4G | 2009-02-25 | cell=GM12878; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=2; subId=231; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep2Gm12878 |
| 2009-11-25 | wgEncodeUncFAIREseqRawDataRep3Gm12878.fastq.gz | 1.2G | 2009-02-25 | cell=GM12878; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=3; subId=231; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep3Gm12878 |
| 2010-01-20 | wgEncodeUncFAIREseqPeaksGm12878.narrowPeak.gz | 2.7M | 2009-04-20 | cell=GM12878; dataType=FAIREseq; lab=UNC; type=narrowPeak; view=Peaks; subId=287; grant=Crawford; softwareVersion=F-Seq 1.81; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeUncFAIREseqPeaksGm12878 |
| 2009-11-25 | wgEncodeUncFAIREseqAlignmentsRep1Gm12878.tagAlign.gz | 485M | 2009-02-25 | cell=GM12878; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=1; subId=231; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep1Gm12878 |
| 2009-11-25 | wgEncodeUncFAIREseqAlignmentsRep2Gm12878.tagAlign.gz | 621M | 2009-02-25 | cell=GM12878; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=2; subId=231; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep2Gm12878 |
| 2009-11-25 | wgEncodeUncFAIREseqAlignmentsRep3Gm12878.tagAlign.gz | 830M | 2009-02-25 | cell=GM12878; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=3; subId=231; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep3Gm12878 |
| 2009-11-25 | wgEncodeUncFAIREseqBaseOverlapSignalGm12878.wig.gz | 250M | 2009-02-25 | cell=GM12878; dataType=FAIREseq; lab=UNC; type=wig; view=Base_Overlap_Signal; subId=231; grant=Crawford; softwareVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUncFAIREseqBaseOverlapSignalGm12878 |
| 2009-11-25 | wgEncodeUncFAIREseqSignalGm12878.wig.gz | 630M | 2009-02-25 | cell=GM12878; dataType=FAIREseq; lab=UNC; type=wig; view=Signal; subId=231; grant=Crawford; softwareVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUncFAIREseqSignalGm12878 |
| 2009-12-21 | wgEncodeUtaChIPseqRawDataRep1Helas3Ctcf.fastq.gz | 546M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=fastq; view=RawData; replicate=1; subId=281; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqRawDataRep2Helas3Ctcf.fastq.gz | 481M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=fastq; view=RawData; replicate=2; subId=281; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqPeaksHelas3Ctcf.narrowPeak.gz | 1.3M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=narrowPeak; view=Peaks; subId=281; grant=Crawford; labVersion=ROC aalysis; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqPeaksHelas3Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqAlignmentsRep1Helas3Ctcf.tagAlign.gz | 199M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=tagAlign; view=Alignments; replicate=1; subId=281; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqAlignmentsRep2Helas3Ctcf.tagAlign.gz | 179M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=tagAlign; view=Alignments; replicate=2; subId=281; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqBaseOverlapSignalHelas3Ctcf.wig.gz | 83M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=wig; view=Base_Overlap_Signal; subId=281; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqBaseOverlapSignalHelas3Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqSignalHelas3Ctcf.wig.gz | 794M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=wig; view=Signal; subId=281; grant=Crawford; labVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqSignalHelas3Ctcf |
| 2009-12-16 | wgEncodeUtaustinChIPseqRawDataHelas3Input.fastq.gz | 402M | 2009-03-16 | cell=HeLa-S3; dataType=ChIPseq; antibody=Input; lab=UT-A; type=fastq; view=RawData; subId=275; grant=Crawford; labVersion=Illumina, pooled; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaustinChIPseqRawSignalHelas3Input |
| 2009-12-16 | wgEncodeUtaustinChIPseqAlignmentsHelas3Input.tagAlign.gz | 175M | 2009-03-16 | cell=HeLa-S3; dataType=ChIPseq; antibody=Input; lab=UT-A; type=tagAlign; view=Alignments; subId=275; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaustinChIPseqRawSignalHelas3Input |
| 2009-12-16 | wgEncodeUtaustinChIPseqSignalHelas3Input.wig.gz | 788M | 2009-03-16 | cell=HeLa-S3; dataType=ChIPseq; antibody=Input; lab=UT-A; type=wig; view=Signal; subId=275; grant=Crawford; labVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaustinChIPseqSignalHelas3Input |
| 2009-12-21 | wgEncodeUtaChIPseqRawDataRep1Helas3Cmyc.fastq.gz | 298M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=fastq; view=RawData; replicate=1; subId=282; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc |
| 2009-12-21 | wgEncodeUtaChIPseqRawDataRep2Helas3Cmyc.fastq.gz | 306M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=fastq; view=RawData; replicate=2; subId=282; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc |
| 2009-12-21 | wgEncodeUtaChIPseqPeaksHelas3Cmyc.narrowPeak.gz | 764K | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=narrowPeak; view=Peaks; subId=282; grant=Crawford; labVersion=ROC analysis; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqPeaksHelas3Cmyc |
| 2009-12-21 | wgEncodeUtaChIPseqAlignmentsRep1Helas3Cmyc.tagAlign.gz | 124M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=tagAlign; view=Alignments; replicate=1; subId=282; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc |
| 2009-12-21 | wgEncodeUtaChIPseqAlignmentsRep2Helas3Cmyc.tagAlign.gz | 127M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=tagAlign; view=Alignments; replicate=2; subId=282; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc |
| 2009-12-21 | wgEncodeUtaChIPseqBaseOverlapSignalHelas3Cmyc.wig.gz | 56M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=wig; view=Base_Overlap_Signal; subId=282; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqBaseOverlapSignalHelas3Cmyc |
| 2009-12-21 | wgEncodeUtaChIPseqSignalHelas3Cmyc.wig.gz | 824M | 2009-03-21 | cell=HeLa-S3; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=wig; view=Signal; subId=282; grant=Crawford; labVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqSignalHelas3Cmyc |
| 2009-12-21 | wgEncodeDukeDNaseSeqRawDataRep1Helas3.fastq.gz | 220M | 2009-03-21 | cell=HeLa-S3; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=1; subId=280; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep1Helas3 |
| 2009-12-21 | wgEncodeDukeDNaseSeqRawDataRep2Helas3.fastq.gz | 304M | 2009-03-21 | cell=HeLa-S3; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=2; subId=280; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep2Helas3 |
| 2009-12-21 | wgEncodeDukeDNaseSeqRawDataRep3Helas3.fastq.gz | 601M | 2009-03-21 | cell=HeLa-S3; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=3; subId=280; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep3Helas3 |
| 2009-12-21 | wgEncodeDukeDNaseSeqPeaksHelas3.narrowPeak.gz | 2.1M | 2009-03-21 | cell=HeLa-S3; dataType=DNaseSeq; lab=Duke; type=narrowPeak; view=Peaks; subId=280; grant=Crawford; labVersion=F-Seq 1.81, ROC score; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqPeaksHelas3 |
| 2009-12-21 | wgEncodeDukeDNaseSeqAlignmentsRep1Helas3.tagAlign.gz | 194M | 2009-03-21 | cell=HeLa-S3; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=1; subId=280; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep1Helas3 |
| 2009-12-21 | wgEncodeDukeDNaseSeqAlignmentsRep2Helas3.tagAlign.gz | 253M | 2009-03-21 | cell=HeLa-S3; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=2; subId=280; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep2Helas3 |
| 2009-12-21 | wgEncodeDukeDNaseSeqAlignmentsRep3Helas3.tagAlign.gz | 492M | 2009-03-21 | cell=HeLa-S3; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=3; subId=280; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep3Helas3 |
| 2009-12-21 | wgEncodeDukeDNaseSeqBaseOverlapSignalHelas3.wig.gz | 114M | 2009-03-21 | cell=HeLa-S3; dataType=DNaseSeq; lab=Duke; type=wig; view=Base_Overlap_Signal; subId=280; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqBaseOverlapSignalHelas3 |
| 2009-12-21 | wgEncodeDukeDNaseSeqSignalHelas3.wig.gz | 977M | 2009-03-21 | cell=HeLa-S3; dataType=DNaseSeq; lab=Duke; type=wig; view=Signal; subId=280; grant=Crawford; labVersion=F-Seq 1.81, pooled reps, pipeline 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqSignalHelas3 |
| 2009-12-22 | wgEncodeUncFAIREseqRawDataRep1Helas3.fastq.gz | 663M | 2009-03-22 | cell=HeLa-S3; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=1; subId=285; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep1Helas3 |
| 2009-12-22 | wgEncodeUncFAIREseqRawDataRep2Helas3.fastq.gz | 564M | 2009-03-22 | cell=HeLa-S3; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=2; subId=285; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep2Helas3 |
| 2009-12-22 | wgEncodeUncFAIREseqRawDataRep3Helas3.fastq.gz | 662M | 2009-03-22 | cell=HeLa-S3; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=3; subId=285; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep3Helas3 |
| 2009-12-22 | wgEncodeUncFAIREseqPeaksHelas3.narrowPeak.gz | 2.5M | 2009-03-22 | cell=HeLa-S3; dataType=FAIREseq; lab=UNC; type=narrowPeak; view=Peaks; subId=336; grant=Crawford; softwareVersion=F-Seq 1.81; dataVersion=ENCODE July 2009 Freeze; dateLoaded=2009-05-22; tableName=wgEncodeUncFAIREseqPeaksHelas3 |
| 2009-12-22 | wgEncodeUncFAIREseqAlignmentsRep1Helas3.tagAlign.gz | 331M | 2009-03-22 | cell=HeLa-S3; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=1; subId=285; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep1Helas3 |
| 2009-12-22 | wgEncodeUncFAIREseqAlignmentsRep2Helas3.tagAlign.gz | 310M | 2009-03-22 | cell=HeLa-S3; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=2; subId=285; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep2Helas3 |
| 2009-12-22 | wgEncodeUncFAIREseqAlignmentsRep3Helas3.tagAlign.gz | 343M | 2009-03-22 | cell=HeLa-S3; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=3; subId=285; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep3Helas3 |
| 2009-12-22 | wgEncodeUncFAIREseqBaseOverlapSignalHelas3.wig.gz | 138M | 2009-03-22 | cell=HeLa-S3; dataType=FAIREseq; lab=UNC; type=wig; view=Base_Overlap_Signal; subId=285; grant=Crawford; softwareVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUncFAIREseqBaseOverlapSignalHelas3 |
| 2009-12-22 | wgEncodeUncFAIREseqSignalHelas3.wig.gz | 599M | 2009-03-22 | cell=HeLa-S3; dataType=FAIREseq; lab=UNC; type=wig; view=Signal; subId=285; grant=Crawford; softwareVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUncFAIREseqSignalHelas3 |
| 2009-12-21 | wgEncodeUtaChIPseqRawDataRep1Hepg2Ctcf.fastq.gz | 287M | 2009-03-21 | cell=HepG2; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=fastq; view=RawData; replicate=1; subId=283; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqRawDataRep2Hepg2Ctcf.fastq.gz | 276M | 2009-03-21 | cell=HepG2; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=fastq; view=RawData; replicate=2; subId=283; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqPeaksHepg2Ctcf.narrowPeak.gz | 1.4M | 2009-03-21 | cell=HepG2; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=narrowPeak; view=Peaks; subId=283; grant=Crawford; labVersion=ROC aalysis; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqPeaksHepg2Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqAlignmentsRep1Hepg2Ctcf.tagAlign.gz | 110M | 2009-03-21 | cell=HepG2; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=tagAlign; view=Alignments; replicate=1; subId=283; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqAlignmentsRep2Hepg2Ctcf.tagAlign.gz | 103M | 2009-03-21 | cell=HepG2; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=tagAlign; view=Alignments; replicate=2; subId=283; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqBaseOverlapSignalHepg2Ctcf.wig.gz | 52M | 2009-03-21 | cell=HepG2; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=wig; view=Base_Overlap_Signal; subId=283; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqBaseOverlapSignalHepg2Ctcf |
| 2009-12-21 | wgEncodeUtaChIPseqSignalHepg2Ctcf.wig.gz | 705M | 2009-03-21 | cell=HepG2; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=wig; view=Signal; subId=283; grant=Crawford; labVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqSignalHepg2Ctcf |
| 2009-12-13 | wgEncodeUtaustinChIPseqRawDataHepg2Input.fastq.gz | 465M | 2009-03-13 | cell=HepG2; dataType=ChIPseq; antibody=Input; lab=UT-A; type=fastq; view=RawData; subId=274; grant=Crawford; labVersion=Illumina, pooled; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaustinChIPseqRawSignalHepg2Input |
| 2009-12-13 | wgEncodeUtaustinChIPseqAlignmentsHepg2Input.tagAlign.gz | 169M | 2009-03-13 | cell=HepG2; dataType=ChIPseq; antibody=Input; lab=UT-A; type=tagAlign; view=Alignments; subId=274; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaustinChIPseqRawSignalHepg2Input |
| 2009-12-13 | wgEncodeUtaustinChIPseqSignalHepg2Input.wig.gz | 7.0G | 2009-03-13 | cell=HepG2; dataType=ChIPseq; antibody=Input; lab=UT-A; type=wig; view=Signal; subId=274; grant=Crawford; labVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaustinChIPseqSignalHepg2Input |
| 2009-12-22 | wgEncodeUtaChIPseqRawDataRep1Hepg2Cmyc.fastq.gz | 418M | 2009-03-22 | cell=HepG2; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=fastq; view=RawData; replicate=1; subId=284; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc |
| 2009-12-22 | wgEncodeUtaChIPseqRawDataRep2Hepg2Cmyc.fastq.gz | 285M | 2009-03-22 | cell=HepG2; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=fastq; view=RawData; replicate=2; subId=284; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc |
| 2009-12-22 | wgEncodeUtaChIPseqRawDataRep3Hepg2Cmyc.fastq.gz | 242M | 2009-03-22 | cell=HepG2; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=fastq; view=RawData; replicate=3; subId=284; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc |
| 2009-12-22 | wgEncodeUtaChIPseqPeaksHepg2Cmyc.narrowPeak.gz | 969K | 2009-03-22 | cell=HepG2; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=narrowPeak; view=Peaks; subId=284; grant=Crawford; labVersion=ROC analysis; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqPeaksHepg2Cmyc |
| 2009-12-22 | wgEncodeUtaChIPseqAlignmentsRep1Hepg2Cmyc.tagAlign.gz | 181M | 2009-03-22 | cell=HepG2; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=tagAlign; view=Alignments; replicate=1; subId=284; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc |
| 2009-12-22 | wgEncodeUtaChIPseqAlignmentsRep2Hepg2Cmyc.tagAlign.gz | 129M | 2009-03-22 | cell=HepG2; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=tagAlign; view=Alignments; replicate=2; subId=284; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc |
| 2009-12-22 | wgEncodeUtaChIPseqAlignmentsRep3Hepg2Cmyc.tagAlign.gz | 123M | 2009-03-22 | cell=HepG2; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=tagAlign; view=Alignments; replicate=3; subId=284; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc |
| 2009-12-22 | wgEncodeUtaChIPseqBaseOverlapSignalHepg2Cmyc.wig.gz | 80M | 2009-03-22 | cell=HepG2; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=wig; view=Base_Overlap_Signal; subId=284; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqBaseOverlapSignalHepg2Cmyc |
| 2009-12-22 | wgEncodeUtaChIPseqSignalHepg2Cmyc.wig.gz | 827M | 2009-03-22 | cell=HepG2; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=wig; view=Signal; subId=284; grant=Crawford; labVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqSignalHepg2Cmyc |
| 2009-12-11 | wgEncodeDukeDNaseSeqRawDataRep1Hepg2.fastq.gz | 258M | 2009-03-11 | cell=HepG2; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=1; subId=272; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep1Hepg2 |
| 2009-12-11 | wgEncodeDukeDNaseSeqRawDataRep2Hepg2.fastq.gz | 272M | 2009-03-11 | cell=HepG2; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=2; subId=272; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep2Hepg2 |
| 2009-12-11 | wgEncodeDukeDNaseSeqRawDataRep3Hepg2.fastq.gz | 496M | 2009-03-11 | cell=HepG2; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=3; subId=272; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep3Hepg2 |
| 2009-12-20 | wgEncodeDukeDNaseSeqPeaksHepg2.narrowPeak.gz | 2.0M | 2009-03-20 | cell=HepG2; dataType=DNaseSeq; lab=Duke; type=narrowPeak; view=Peaks; subId=277; grant=Crawford; labVersion=F-Seq 1.81, ROC score; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqPeaksHepg2 |
| 2010-01-15 | wgEncodeDukeDNaseSeqAlignmentsRep1Hepg2.tagAlign.gz | 230M | 2009-03-11 | cell=HepG2; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=1; subId=272; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE May 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep1Hepg2 |
| 2009-12-11 | wgEncodeDukeDNaseSeqAlignmentsRep2Hepg2.tagAlign.gz | 223M | 2009-03-11 | cell=HepG2; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=2; subId=272; grant=Crawford; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep2Hepg2 |
| 2009-12-11 | wgEncodeDukeDNaseSeqAlignmentsRep3Hepg2.tagAlign.gz | 406M | 2009-03-11 | cell=HepG2; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=3; subId=272; grant=Crawford; labVersion=Maq 0.7.1; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep3Hepg2 |
| 2009-12-11 | wgEncodeDukeDNaseSeqBaseOverlapSignalHepg2.wig.gz | 108M | 2009-03-11 | cell=HepG2; dataType=DNaseSeq; lab=Duke; type=wig; view=Base_Overlap_Signal; subId=272; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqBaseOverlapSignalHepg2 |
| 2009-12-11 | wgEncodeDukeDNaseSeqSignalHepg2.wig.gz | 999M | 2009-03-11 | cell=HepG2; dataType=DNaseSeq; lab=Duke; type=wig; view=Signal; subId=272; grant=Crawford; labVersion=F-Seq 1.81, pooled reps, pipeline 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqSignalHepg2 |
| 2010-01-17 | wgEncodeUncFAIREseqRawDataRep1Hepg2.fastq.gz | 1006M | 2009-04-17 | cell=HepG2; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=1; subId=286; grant=Crawford; dataVersion=ENCODE May 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep1Hepg2 |
| 2010-01-17 | wgEncodeUncFAIREseqRawDataRep2Hepg2.fastq.gz | 640M | 2009-04-17 | cell=HepG2; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=2; subId=286; grant=Crawford; dataVersion=ENCODE May 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep2Hepg2 |
| 2010-01-17 | wgEncodeUncFAIREseqRawDataRep3Hepg2.fastq.gz | 996M | 2009-04-17 | cell=HepG2; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=3; subId=286; grant=Crawford; dataVersion=ENCODE May 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep3Hepg2 |
| 2010-01-17 | wgEncodeUncFAIREseqPeaksHepg2.narrowPeak.gz | 3.7M | 2009-04-17 | cell=HepG2; dataType=FAIREseq; lab=UNC; type=narrowPeak; view=Peaks; subId=286; grant=Crawford; softwareVersion=F-Seq 1.81; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeUncFAIREseqPeaksHepg2 |
| 2010-01-17 | wgEncodeUncFAIREseqAlignmentsRep1Hepg2.tagAlign.gz | 408M | 2009-04-17 | cell=HepG2; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=1; subId=286; grant=Crawford; dataVersion=ENCODE May 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep1Hepg2 |
| 2010-01-17 | wgEncodeUncFAIREseqAlignmentsRep2Hepg2.tagAlign.gz | 244M | 2009-04-17 | cell=HepG2; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=2; subId=286; grant=Crawford; dataVersion=ENCODE May 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep2Hepg2 |
| 2010-01-17 | wgEncodeUncFAIREseqAlignmentsRep3Hepg2.tagAlign.gz | 393M | 2009-04-17 | cell=HepG2; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=3; subId=286; grant=Crawford; dataVersion=ENCODE May 2009 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep3Hepg2 |
| 2010-01-17 | wgEncodeUncFAIREseqBaseOverlapSignalHepg2.wig.gz | 154M | 2009-04-17 | cell=HepG2; dataType=FAIREseq; lab=UNC; type=wig; view=Base_Overlap_Signal; subId=286; grant=Crawford; softwareVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeUncFAIREseqBaseOverlapSignalHepg2 |
| 2010-01-17 | wgEncodeUncFAIREseqSignalHepg2.wig.gz | 579M | 2009-04-17 | cell=HepG2; dataType=FAIREseq; lab=UNC; type=wig; view=Signal; subId=286; grant=Crawford; softwareVersion=F-Seq 1.81; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeUncFAIREseqSignalHepg2 |
| 2009-11-27 | wgEncodeUtaChIPseqRawDataRep1K562Ctcf.fastq.gz | 258M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=fastq; view=RawData; replicate=1; subId=244; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1K562Ctcf |
| 2009-11-27 | wgEncodeUtaChIPseqRawDataRep2K562Ctcf.fastq.gz | 234M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=fastq; view=RawData; replicate=2; subId=244; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2K562Ctcf |
| 2009-11-27 | wgEncodeUtaChIPseqRawDataRep3K562Ctcf.fastq.gz | 514M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=fastq; view=RawData; replicate=3; subId=244; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep3K562Ctcf |
| 2009-12-20 | wgEncodeUtaChIPseqPeaksK562Ctcf.narrowPeak.gz | 1.2M | 2009-03-20 | cell=K562; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=narrowPeak; view=Peaks; subId=278; grant=Crawford; labVersion=F-Seq 1.81, ROC aalysis; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqPeaksK562Ctcf |
| 2009-11-27 | wgEncodeUtaChIPseqAlignmentsRep1K562Ctcf.tagAlign.gz | 103M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=tagAlign; view=Alignments; replicate=1; subId=244; grant=Crawford; labVersion=Maq 0.6.5; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1K562Ctcf |
| 2009-11-27 | wgEncodeUtaChIPseqAlignmentsRep2K562Ctcf.tagAlign.gz | 103M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=tagAlign; view=Alignments; replicate=2; subId=244; grant=Crawford; labVersion=Maq 0.6.5; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2K562Ctcf |
| 2009-11-27 | wgEncodeUtaChIPseqAlignmentsRep3K562Ctcf.tagAlign.gz | 199M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=tagAlign; view=Alignments; replicate=3; subId=244; grant=Crawford; labVersion=Maq 0.6.5; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep3K562Ctcf |
| 2009-11-27 | wgEncodeUtaChIPseqBaseOverlapSignalK562Ctcf.wig.gz | 84M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=wig; view=Base_Overlap_Signal; subId=244; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqBaseOverlapSignalK562Ctcf |
| 2009-11-27 | wgEncodeUtaChIPseqSignalK562Ctcf.wig.gz | 805M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=CTCF; lab=UT-A; type=wig; view=Signal; subId=244; grant=Crawford; labVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqSignalK562Ctcf |
| 2009-08-05 | wgEncodeUtaustinChIPseqRawDataK562Input.fastq.gz | 666M | 2008-12-05 | cell=K562; dataType=ChIPseq; antibody=Input; lab=UT-A; type=fastq; view=RawData; subId=109; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaustinChIPseqRawSignalK562Input |
| 2009-08-05 | wgEncodeUtaustinChIPseqAlignmentsK562Input.tagAlign.gz | 286M | 2008-12-05 | cell=K562; dataType=ChIPseq; antibody=Input; lab=UT-A; type=tagAlign; view=Alignments; subId=109; grant=Crawford; labVersion=Maq 0.6.5; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaustinChIPseqRawSignalK562Input |
| 2009-08-05 | wgEncodeUtaustinChIPseqSignalK562Input.wig.gz | 1.1G | 2008-12-05 | cell=K562; dataType=ChIPseq; antibody=Input; lab=UT-A; type=wig; view=Signal; subId=109; grant=Crawford; labVersion=F-Seq 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaustinChIPseqSignalK562Input |
| 2009-11-27 | wgEncodeUtaChIPseqRawDataRep1K562Cmyc.fastq.gz | 400M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=fastq; view=RawData; replicate=1; subId=245; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1K562Cmyc |
| 2009-11-27 | wgEncodeUtaChIPseqRawDataRep2K562Cmyc.fastq.gz | 316M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=fastq; view=RawData; replicate=2; subId=245; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2K562Cmyc |
| 2009-11-27 | wgEncodeUtaChIPseqRawDataRep3K562Cmyc.fastq.gz | 365M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=fastq; view=RawData; replicate=3; subId=245; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep3K562Cmyc |
| 2009-12-20 | wgEncodeUtaChIPseqPeaksK562Cmyc.narrowPeak.gz | 803K | 2009-03-20 | cell=K562; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=narrowPeak; view=Peaks; subId=278; grant=Crawford; labVersion=F-Seq 1.81, ROC aalysis; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqPeaksK562Cmyc |
| 2009-11-27 | wgEncodeUtaChIPseqAlignmentsRep1K562Cmyc.tagAlign.gz | 177M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=tagAlign; view=Alignments; replicate=1; subId=245; grant=Crawford; labVersion=Maq 0.6.5; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep1K562Cmyc |
| 2009-11-27 | wgEncodeUtaChIPseqAlignmentsRep2K562Cmyc.tagAlign.gz | 134M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=tagAlign; view=Alignments; replicate=2; subId=245; grant=Crawford; labVersion=Maq 0.6.5; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep2K562Cmyc |
| 2009-11-27 | wgEncodeUtaChIPseqAlignmentsRep3K562Cmyc.tagAlign.gz | 156M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=tagAlign; view=Alignments; replicate=3; subId=245; grant=Crawford; labVersion=Maq 0.6.5; dataVersion=ENCODE Feb 2009 Freeze; parentTable=wgEncodeUtaChIPseqRawSignalRep3K562Cmyc |
| 2009-11-27 | wgEncodeUtaChIPseqBaseOverlapSignalK562Cmyc.wig.gz | 90M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=wig; view=Base_Overlap_Signal; subId=245; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqBaseOverlapSignalK562Cmyc |
| 2009-11-27 | wgEncodeUtaChIPseqSignalK562Cmyc.wig.gz | 871M | 2009-02-27 | cell=K562; dataType=ChIPseq; antibody=c-Myc; lab=UT-A; type=wig; view=Signal; subId=245; grant=Crawford; labVersion=F-Seq 1.81; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUtaChIPseqSignalK562Cmyc |
| 2009-08-07 | wgEncodeDukeDNaseSeqRawDataRep1K562.fastq.gz | 229M | 2008-12-07 | cell=K562; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=1; subId=112; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep1K562 |
| 2009-08-07 | wgEncodeDukeDNaseSeqRawDataRep2K562.fastq.gz | 619M | 2008-12-07 | cell=K562; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=2; subId=112; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep2K562 |
| 2009-08-07 | wgEncodeDukeDNaseSeqRawDataRep3K562.fastq.gz | 619M | 2008-12-07 | cell=K562; dataType=DNaseSeq; lab=Duke; type=fastq; view=RawData; replicate=3; subId=112; grant=Crawford; labVersion=Illumina; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep3K562 |
| 2009-12-20 | wgEncodeDukeDNaseSeqPeaksK562.narrowPeak.gz | 1.8M | 2009-03-20 | cell=K562; dataType=DNaseSeq; lab=Duke; type=narrowPeak; view=Peaks; subId=277; grant=Crawford; labVersion=F-Seq 1.81, ROC score; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqPeaksK562 |
| 2009-08-07 | wgEncodeDukeDNaseSeqAlignmentsRep1K562.tagAlign.gz | 178M | 2008-12-07 | cell=K562; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=1; subId=112; grant=Crawford; labVersion=Maq 0.6.5; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep1K562 |
| 2009-08-07 | wgEncodeDukeDNaseSeqAlignmentsRep2K562.tagAlign.gz | 480M | 2008-12-07 | cell=K562; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=2; subId=112; grant=Crawford; labVersion=Maq 0.6.5; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep2K562 |
| 2009-08-07 | wgEncodeDukeDNaseSeqAlignmentsRep3K562.tagAlign.gz | 203M | 2008-12-07 | cell=K562; dataType=DNaseSeq; lab=Duke; type=tagAlign; view=Alignments; replicate=3; subId=112; grant=Crawford; labVersion=Maq 0.6.5; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeDukeDNaseSeqRawSignalRep3K562 |
| 2009-08-09 | wgEncodeDukeDNaseSeqBaseOverlapSignalK562.wig.gz | 111M | 2008-12-09 | cell=K562; dataType=DNaseSeq; lab=Duke; type=wig; view=Base_Overlap_Signal; subId=116; grant=Crawford; labVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Nov 2008 Freeze; tableName=wgEncodeDukeDNaseSeqBaseOverlapSignalK562 |
| 2009-11-26 | wgEncodeDukeDNaseSeqSignalK562.wig.gz | 1.1G | 2009-02-26 | cell=K562; dataType=DNaseSeq; lab=Duke; type=wig; view=Signal; subId=235; grant=Crawford; labVersion=F-Seq 1.81, average reps, pipeline 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeDukeDNaseSeqSignalK562 |
| 2009-08-07 | wgEncodeUncFAIREseqRawDataRep1K562.fastq.gz | 902M | 2008-12-07 | cell=K562; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=1; subId=113; grant=Crawford; softwareVersion=Illumina; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep1K562 |
| 2009-08-07 | wgEncodeUncFAIREseqRawDataRep2K562.fastq.gz | 905M | 2008-12-07 | cell=K562; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=2; subId=113; grant=Crawford; softwareVersion=Illumina; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep2K562 |
| 2009-08-07 | wgEncodeUncFAIREseqRawDataRep3K562.fastq.gz | 691M | 2008-12-07 | cell=K562; dataType=FAIREseq; lab=UNC; type=fastq; view=RawData; replicate=3; subId=113; grant=Crawford; softwareVersion=Illumina; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep3K562 |
| 2010-01-20 | wgEncodeUncFAIREseqPeaksK562.narrowPeak.gz | 4.1M | 2009-04-20 | cell=K562; dataType=FAIREseq; lab=UNC; type=narrowPeak; view=Peaks; subId=287; grant=Crawford; softwareVersion=F-Seq 1.81; dataVersion=ENCODE July 2009 Freeze; tableName=wgEncodeUncFAIREseqPeaksK562 |
| 2009-08-07 | wgEncodeUncFAIREseqAlignmentsRep1K562.tagAlign.gz | 391M | 2008-12-07 | cell=K562; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=1; subId=113; grant=Crawford; softwareVersion=Maq 0.6.5; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep1K562 |
| 2009-08-07 | wgEncodeUncFAIREseqAlignmentsRep2K562.tagAlign.gz | 345M | 2008-12-07 | cell=K562; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=2; subId=113; grant=Crawford; softwareVersion=Maq 0.6.5; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep2K562 |
| 2009-08-07 | wgEncodeUncFAIREseqAlignmentsRep3K562.tagAlign.gz | 326M | 2008-12-07 | cell=K562; dataType=FAIREseq; lab=UNC; type=tagAlign; view=Alignments; replicate=3; subId=113; grant=Crawford; softwareVersion=Maq 0.6.5; dataVersion=ENCODE Nov 2008 Freeze; parentTable=wgEncodeUncFAIREseqRawSignalRep3K562 |
| 2009-08-09 | wgEncodeUncFAIREseqBaseOverlapSignalK562.wig.gz | 159M | 2008-12-09 | cell=K562; dataType=FAIREseq; lab=UNC; type=wig; view=Base_Overlap_Signal; subId=117; grant=Crawford; softwareVersion=baseAlignCounts.pl 1.0; dataVersion=ENCODE Nov 2008 Freeze; tableName=wgEncodeUncFAIREseqBaseOverlapSignalK562 |
| 2009-11-26 | wgEncodeUncFAIREseqSignalK562.wig.gz | 576M | 2009-02-26 | cell=K562; dataType=FAIREseq; lab=UNC; type=wig; view=Signal; subId=234; grant=Crawford; softwareVersion=F-Seq, 1.81, combined seqs, pipeline 1.0; dataVersion=ENCODE Feb 2009 Freeze; tableName=wgEncodeUncFAIREseqSignalK562 |