This directory contains reciprocal-best netted chains for haeCon2-ascSuu1.

 - haeCon2.ascSuu1.rbest.net.gz: haeCon2-referenced recip.best net to ascSuu1.
 - haeCon2.ascSuu1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from haeCon2 to ascSuu1 through the recip.best net.

 - ascSuu1.haeCon2.rbest.net.gz: ascSuu1-referenced recip.best net.
 - ascSuu1.haeCon2.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/haeCon2.ascSuu1.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html