This directory contains reciprocal-best netted chains for droSim2-dm6.

 - droSim2.dm6.rbest.net.gz: droSim2-referenced recip.best net to dm6.
 - droSim2.dm6.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from droSim2 to dm6 through the recip.best net.

 - dm6.droSim2.rbest.net.gz: dm6-referenced recip.best net.
 - dm6.droSim2.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/droSim2.dm6.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html