This directory contains reciprocal-best netted chains for danRer11-mm10. - danRer11.mm10.rbest.net.gz: danRer11-referenced recip.best net to mm10. - danRer11.mm10.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from danRer11 to mm10 through the recip.best net. - mm10.danRer11.rbest.net.gz: mm10-referenced recip.best net. - mm10.danRer11.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/danRer11.mm10.rbest.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html