This directory contains reciprocal-best netted chains for danRer11-GCF_002234675.1.

 - danRer11.GCF_002234675.1.rbest.net.gz: danRer11-referenced recip.best net to GCF_002234675.1.
 - danRer11.GCF_002234675.1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from danRer11 to GCF_002234675.1 through the recip.best net.

 - GCF_002234675.1.danRer11.rbest.net.gz: GCF_002234675.1-referenced recip.best net.
 - GCF_002234675.1.danRer11.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/danRer11.GCF_002234675.1.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html