This directory contains reciprocal-best netted chains for danRer10-tetNig2.

 - danRer10.tetNig2.rbest.net.gz: danRer10-referenced recip.best net to tetNig2.
 - danRer10.tetNig2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from danRer10 to tetNig2 through the recip.best net.

 - tetNig2.danRer10.rbest.net.gz: tetNig2-referenced recip.best net.
 - tetNig2.danRer10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/danRer10.tetNig2.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html