This directory contains reciprocal-best netted chains for tarSyr2-mm10.

 - tarSyr2.mm10.rbest.net.gz: tarSyr2-referenced recip.best net to mm10.
 - tarSyr2.mm10.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from tarSyr2 to mm10 through the recip.best net.

 - mm10.tarSyr2.rbest.net.gz: mm10-referenced recip.best net.
 - mm10.tarSyr2.rbest.chain.gz: recip.best "liftOver" chains.

 - directory axtRBestNet/ - reciprocal best alignments in axt file format
   http://genome.ucsc.edu/goldenPath/help/axt.html