##maf version=1 scoring=blastz
a score=0.000000
s hg38.chrM                            0 586 +     16569  
s Gorilla_beringei.k141_1052630     9388 577 +     47896  
i Gorilla_beringei.k141_1052630 N 0 N 0
s Gorilla_gorilla.LT578326.1    46294352 577 - 126432135  
i Gorilla_gorilla.LT578326.1    N 0 N 0

a score=0.000000
s hg38.chrM                     586 2 +     16569 CT
s Pan_paniscus.CM003392.1 115196659 2 - 138149186 NN
i Pan_paniscus.CM003392.1 N 0 I 1143

a score=0.000000
s hg38.chrM               588 308 + 16569 TACCTCCTCAAAGCAATAcactgaaaatgtttagacgggctcacatcaccccataaacaaataggtttggtcctagcctttctattagctcttagtaagattacacatgcaaGCATCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGAACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCTAGCCACACCCCCACGGGAAACAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACtaaCCCCAGGGTTGGTCAATTTCGTGCCAGCCA
s Pan_paniscus.KT153251.1  12 307 + 16605 tacccccttaaagcaatacactgaaaatgtttcgacgggtttatatcaccccataaacaaacaggtttggtcctagcctttctattagctcttagtaagattacacatgcaagcatccccGTCCCGGTGAGT-CACcctctaaatcaccatgatcaaaaggaacaagtatcaagcacacagcaatgcagctcaagacgcttagcctagccacacccccacgggagacagcagtgataaacctttagcaataaacgaaagtttaactaagccatactaaCCCtagggttggtcaatttcgtgccagcta
i Pan_paniscus.KT153251.1 n 1143 C 0

a score=0.000000
s hg38.chrM                       896 59 +     16569 CCGCGGTCaCACGATTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCA
s Pan_paniscus.KT153251.1         319 59 +     16605 ccgcggtcacacgattaacccaagtcaatagaaaccggcgtaAAGAGTGTTTTAGATCA
i Pan_paniscus.KT153251.1    C 0 C 0
s Pan_troglodytes.CM009247.2 22468438 59 + 110513671 CCGCGGTCACACAATTAACCCAAGTCAATAGAAACCGGCGTAAAGAGTGTTTTAGATCA
i Pan_troglodytes.CM009247.2 N 0 C 0

a score=0.000000
s hg38.chrM                                955 227 +     16569 CCCCCTCCCCAA-TAAAGCTAA-AACTCACCTGAGTTGTAAAAAA-CTCCAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATAtctgaacacacaatagctaagacccaaactgggattagataccccactatgcttagccctaaa-cctcaaca-gttaaa-tcaacaaaactgctcgcc-agaacactacgagccacagcttaaaactcaaaggacctggcggtgc
s Gorilla_beringei.k141_1617988          27990  99 +     65570 CCCTAACAGCAG-TAATGCTAATAACTTTCATGATCTGAGAAGGC-TTCGC-----TTCAAAATGAA-----------------------------------------------------------------------------------AAGTTCTAACA-ATTGTG-CAACCAT--CTACCAACTTAGAAT-----------------------------------------
i Gorilla_beringei.k141_1617988       N 0 C 0
s Gorilla_gorilla.LT578344.1          92875367  99 - 151855818 CCCTAACAGCAG-TAACGCTAATAACTTTCATGATCTGAGAAGGC-TTCgc-----ttcaaaatgaa-----------------------------------------------------------------------------------aagttctaACA-ATTGTG-CAACCAT--CTACCAACTTAGAAT-----------------------------------------
i Gorilla_gorilla.LT578344.1          N 0 C 0
s Hoolock_leuconedys.ctg247               1164155  99 +   1558947 ccctaacagcag-taacgctaatagttttcatgatctgagaaggc-ttcgc-----ttcaaaacgaa-----------------------------------------------------------------------------------aagttctaaca-attgtg-caaccat--ctaccaacttagaat-----------------------------------------
i Hoolock_leuconedys.ctg247              N 0 C 0
s Hylobates_abbotti.k141_1687214          3221  99 +      5743 CCCTAACAGCAG-TAACGCTAATAATTTTCATGATCTGAGAAGGC-TTCGC-----TTCAAAACGAA-----------------------------------------------------------------------------------AAGTTCTAACA-ATTGTG-CAACCAT--CTACCAACTTAGAAT-----------------------------------------
i Hylobates_abbotti.k141_1687214      N 0 C 0
s Hylobates_agilis.k141_901471            1077  95 -     10707 CCCTAACAGCAG-TAATACTAATAATTTTCATGGTCTGAGAAGCC-TTCAC-----TTCAAAATGAA-----------------------------------------------------------------------------------AAGTT--AATA-GTTGAG-CAACCAT--CTACCAACTTAGA-------------------------------------------
i Hylobates_agilis.k141_901471        N 0 C 0
s Hylobates_klossii.k141_738267           7811  99 +      9817 ccctaacagcag-taacgctaataattttcatgatctgagaaggc-ttcac-----ttcaaaacgaa-----------------------------------------------------------------------------------aagttctaaca-attgtg-caaccat--ctaCCAACTTAGAAT-----------------------------------------
i Hylobates_klossii.k141_738267       N 0 C 0
s Hylobates_pileatus_b.LG01                    100231  99 - 256317233 ccctaacagcag-taacgctaataattttcatgatctgagaaggc-ttcgc-----ttcaaaacgaa-----------------------------------------------------------------------------------aagttctaaca-attgtg-caaccat--ctaccaacttagaat-----------------------------------------
i Hylobates_pileatus_b.LG01                  N 0 C 0
s Hylobates_muelleri.k141_589065          3175  99 -     23169 CCCTAACAGCAG-TAACGCTAATAATTTTCATGATCTGAGAAGGC-TTCGC-----TTCAAAACGAA-----------------------------------------------------------------------------------AAGTTCTAACA-ATTGTG-CAACCAT--CTACCAACTTAGAAT-----------------------------------------
i Hylobates_muelleri.k141_589065      N 0 I 1672
s Hylobates_pileatus_a.tarseq_843        1153355  99 -   1451355 CCCTAACAGCAG-TAACGCTAATAATTTTCATGATCTGAGAAGGC-TTCGC-----TTCAAAACGAA-----------------------------------------------------------------------------------AAGTTCTAACA-ATTGTG-CAACCAT--CTACCAACGAAGAAT-----------------------------------------
i Hylobates_pileatus_a.tarseq_843       N 0 C 0
s Nomascus_annamensis.k141_1895142       38151  58 +     81336 ------------------------------------------ggc-TTCGC-----TTCAAAACGAA-----------------------------------------------------------------------------------AAGTTCTAACA-ATTGTG-CAACCAT--CTACCAACTTAGAAT-----------------------------------------
i Nomascus_annamensis.k141_1895142    N 0 C 0
s Nomascus_concolor.k141_556697          15469  99 +     16611 CTCTAACAGCAG-TAATACTAATAATTTTCATAGTCTGAGAGGCT-TTCGC-----CTCAAAACGAA-----------------------------------------------------------------------------------AAGTTCTAATA-ATTGAA-CAGCCTT--CTACCAACCTAGAGT-----------------------------------------
i Nomascus_concolor.k141_556697       N 0 I 335
s Nomascus_gabriellae.k141_640476        16234  58 +     29887 ------------------------------------------ggc-TTCGC-----TTCAAAACGAA-----------------------------------------------------------------------------------AAGTTCTAACA-ATTGTG-CAACCAT--CTACCAACTTAGAAT-----------------------------------------
i Nomascus_gabriellae.k141_640476     N 0 C 0
s Nomascus_siki_b.tarseq_193       1231253  58 +   1505665 ------------------------------------------ggc-TTCGC-----TTCAAAACGAA-----------------------------------------------------------------------------------AAGTTCTAACA-ATTGTG-CAACCAT--CTACCAACTTAGAAT-----------------------------------------
i Nomascus_siki_b.tarseq_193      N 0 C 0
s Nomascus_siki_a.k141_859023               6104  58 +     17467 ------------------------------------------ggc-TTCGC-----TTCAAAACGAA-----------------------------------------------------------------------------------AAGTTCTAACA-ATTGTG-CAACCAT--CTACCAACTTAGAAT-----------------------------------------
i Nomascus_siki_a.k141_859023           N 0 C 0
s Pan_paniscus.KT153251.1                  378 228 +     16605 CccccccccCAA-TAAAGCTAA-AATTCACCTGAGTTGTAaaaaaACTCCAGCTGATACAAAATAAACTACGAAAGTGGCTTTAACACATctgaacacacaatagctaagacccaaactgggattagataccccactatgcttagccctaaa-cttcaaca-gttaaa-tcaacaaaactgctcgcc-agaacactacgagccacagcttaaaactcaaaggacctggcggtgc
i Pan_paniscus.KT153251.1             C 0 I 5
s Pan_troglodytes.CM009247.2          22468497 226 + 110513671 ATCCCCCTC-AA-TAAAGCTAA-AATTCACCTGAGTTGTAAAAAA-CTCCAGCCGATACAAAATAAACTACGAAAGTGGCTTTAACACATctgaacacacaatagctaagacccaaactgggattagataccccactatgcttagccctaaa-cttcaaCA-GTTAAA-TTAACAAAACTGCTCGCC-AGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGC
i Pan_troglodytes.CM009247.2          C 0 I 6
s Pongo_abelii.KZ622949.1              2627732  99 -   3740455 ccctaacagcag-taACGCTAATAATTTTCATGATCTGagaaggc-ttcgC-----TTCAaaacgaa-----------------------------------------------------------------------------------aagttctaaca-attgtg-caaccat--ctaccaacttagaat-----------------------------------------
i Pongo_abelii.KZ622949.1             N 0 C 0
s Pongo_pygmaeus.ctg239                1460563  99 +   1773800 ccctaacagcag-taacgctaataattttcatgatctgagaagGC-TtcGC-----TTCAaaacgaa-----------------------------------------------------------------------------------aaGTTCTAACA-ATTGTG-CAACCAT--CTACCAACTTAGAAT-----------------------------------------
i Pongo_pygmaeus.ctg239               N 0 C 0
s Symphalangus_syndactylus.tarseq_252   921408  95 -    984445 CCCTAACAGCag-taatactaataaTTTTCATGGTCTGAGAAGCC-TTCAC-----TTCAAAATGAA-----------------------------------------------------------------------------------AAGT--TAATA-GTTGAG-CAACCAT--CTACCAACTTAGA-------------------------------------------
i Symphalangus_syndactylus.tarseq_252 N 0 C 0

a score=0.000000
s hg38.chrM                               1182 5 +     16569 ttcat
s Pan_paniscus.CM003392.1             22944234 5 + 138149186 TTCAT
i Pan_paniscus.CM003392.1             n 5 I 1
s Pan_troglodytes.NBAG03002517.1             4 5 +     35907 tccat
i Pan_troglodytes.NBAG03002517.1      n 6 I 28952
e Symphalangus_syndactylus.tarseq_252   921503 0 -    984445 C
e Pongo_pygmaeus.ctg239                1460662 0 +   1773800 C
e Pongo_abelii.KZ622949.1              2627831 0 -   3740455 C
e Nomascus_siki_a.k141_859023               6162 0 +     17467 C
e Nomascus_siki_b.tarseq_193       1231311 0 +   1505665 C
e Nomascus_gabriellae.k141_640476        16292 0 +     29887 C
e Nomascus_concolor.k141_556697          15568 335 +     16611 I
e Nomascus_annamensis.k141_1895142       38209 0 +     81336 C
e Hylobates_pileatus_a.tarseq_843        1153454 0 -   1451355 C
e Hylobates_muelleri.k141_589065          3274 1672 -     23169 I
e Hylobates_pileatus_b.LG01                    100330 0 - 256317233 C
e Hylobates_klossii.k141_738267           7910 0 +      9817 C
e Hylobates_agilis.k141_901471            1172 0 -     10707 C
e Hylobates_abbotti.k141_1687214          3320 0 +      5743 C
e Hoolock_leuconedys.ctg247               1164254 0 +   1558947 C
e Gorilla_gorilla.LT578344.1          92875466 0 - 151855818 C
e Gorilla_beringei.k141_1617988          28089 0 +     65570 C

a score=0.000000
s hg38.chrM                               1187 1 +     16569 a
s Pan_paniscus.KT153251.1                  611 1 +     16605 a
i Pan_paniscus.KT153251.1             I 5 I 24
s Pan_troglodytes.NBAG03002517.1         28961 1 +     35907 a
i Pan_troglodytes.NBAG03002517.1      I 28952 T 28275
e Symphalangus_syndactylus.tarseq_252   921503 0 -    984445 C
e Pongo_pygmaeus.ctg239                1460662 0 +   1773800 C
e Pongo_abelii.KZ622949.1              2627831 0 -   3740455 C
e Nomascus_siki_a.k141_859023               6162 0 +     17467 C
e Nomascus_siki_b.tarseq_193       1231311 0 +   1505665 C
e Nomascus_gabriellae.k141_640476        16292 0 +     29887 C
e Nomascus_concolor.k141_556697          15568 335 +     16611 I
e Nomascus_annamensis.k141_1895142       38209 0 +     81336 C
e Hylobates_pileatus_a.tarseq_843        1153454 0 -   1451355 C
e Hylobates_muelleri.k141_589065          3274 1672 -     23169 I
e Hylobates_pileatus_b.LG01                    100330 0 - 256317233 C
e Hylobates_klossii.k141_738267           7910 0 +      9817 C
e Hylobates_agilis.k141_901471            1172 0 -     10707 C
e Hylobates_abbotti.k141_1687214          3320 0 +      5743 C
e Hoolock_leuconedys.ctg247               1164254 0 +   1558947 C
e Gorilla_gorilla.LT578344.1          92875466 0 - 151855818 C
e Gorilla_beringei.k141_1617988          28089 0 +     65570 C

a score=0.000000
s hg38.chrM                               1188 24 +     16569 tccctctagaggagcctgttctgt
s Pan_paniscus.CM003392.1             22944240 24 + 138149186 TCCCTCTAGAGGAGCCTGTTCTGT
i Pan_paniscus.CM003392.1             I 1 I 10
s Pan_troglodytes.CM009247.2          22468729 24 + 110513671 TCCCTCTAGAGGAGCCTGTTCTGT
i Pan_troglodytes.CM009247.2          I 6 I 10
e Symphalangus_syndactylus.tarseq_252   921503  0 -    984445 C
e Pongo_pygmaeus.ctg239                1460662  0 +   1773800 C
e Pongo_abelii.KZ622949.1              2627831  0 -   3740455 C
e Nomascus_siki_a.k141_859023               6162  0 +     17467 C
e Nomascus_siki_b.tarseq_193       1231311  0 +   1505665 C
e Nomascus_gabriellae.k141_640476        16292  0 +     29887 C
e Nomascus_concolor.k141_556697          15568 335 +     16611 I
e Nomascus_annamensis.k141_1895142       38209  0 +     81336 C
e Hylobates_pileatus_a.tarseq_843        1153454  0 -   1451355 C
e Hylobates_muelleri.k141_589065          3274 1672 -     23169 I
e Hylobates_pileatus_b.LG01                    100330  0 - 256317233 C
e Hylobates_klossii.k141_738267           7910  0 +      9817 C
e Hylobates_agilis.k141_901471            1172  0 -     10707 C
e Hylobates_abbotti.k141_1687214          3320  0 +      5743 C
e Hoolock_leuconedys.ctg247               1164254  0 +   1558947 C
e Gorilla_gorilla.LT578344.1          92875466  0 - 151855818 C
e Gorilla_beringei.k141_1617988          28089  0 +     65570 C

a score=0.000000
s hg38.chrM                               1212 10 +     16569 aatcgataaa
s Pan_paniscus.KT153251.1                  636 10 +     16605 aatcgataaa
i Pan_paniscus.KT153251.1             I 24 I 1
s Pan_troglodytes.NBAG03002517.1           687 10 +     35907 attcgattag
i Pan_troglodytes.NBAG03002517.1      T 28275 I 2442
e Symphalangus_syndactylus.tarseq_252   921503  0 -    984445 C
e Pongo_pygmaeus.ctg239                1460662  0 +   1773800 C
e Pongo_abelii.KZ622949.1              2627831  0 -   3740455 C
e Nomascus_siki_a.k141_859023               6162  0 +     17467 C
e Nomascus_siki_b.tarseq_193       1231311  0 +   1505665 C
e Nomascus_gabriellae.k141_640476        16292  0 +     29887 C
e Nomascus_concolor.k141_556697          15568 335 +     16611 I
e Nomascus_annamensis.k141_1895142       38209  0 +     81336 C
e Hylobates_pileatus_a.tarseq_843        1153454  0 -   1451355 C
e Hylobates_muelleri.k141_589065          3274 1672 -     23169 I
e Hylobates_pileatus_b.LG01                    100330  0 - 256317233 C
e Hylobates_klossii.k141_738267           7910  0 +      9817 C
e Hylobates_agilis.k141_901471            1172  0 -     10707 C
e Hylobates_abbotti.k141_1687214          3320  0 +      5743 C
e Hoolock_leuconedys.ctg247               1164254  0 +   1558947 C
e Gorilla_gorilla.LT578344.1          92875466  0 - 151855818 C
e Gorilla_beringei.k141_1617988          28089  0 +     65570 C

a score=0.000000
s hg38.chrM                               1222 1 +     16569 c
s Pan_paniscus.CM003392.1             22944274 1 + 138149186 C
i Pan_paniscus.CM003392.1             I 10 I 508
s Pan_troglodytes.CM009247.2          22468763 1 + 110513671 C
i Pan_troglodytes.CM009247.2          I 10 C 0
e Symphalangus_syndactylus.tarseq_252   921503 0 -    984445 C
e Pongo_pygmaeus.ctg239                1460662 0 +   1773800 C
e Pongo_abelii.KZ622949.1              2627831 0 -   3740455 C
e Nomascus_siki_a.k141_859023               6162 0 +     17467 C
e Nomascus_siki_b.tarseq_193       1231311 0 +   1505665 C
e Nomascus_gabriellae.k141_640476        16292 0 +     29887 C
e Nomascus_concolor.k141_556697          15568 335 +     16611 I
e Nomascus_annamensis.k141_1895142       38209 0 +     81336 C
e Hylobates_pileatus_a.tarseq_843        1153454 0 -   1451355 C
e Hylobates_muelleri.k141_589065          3274 1672 -     23169 I
e Hylobates_pileatus_b.LG01                    100330 0 - 256317233 C
e Hylobates_klossii.k141_738267           7910 0 +      9817 C
e Hylobates_agilis.k141_901471            1172 0 -     10707 C
e Hylobates_abbotti.k141_1687214          3320 0 +      5743 C
e Hoolock_leuconedys.ctg247               1164254 0 +   1558947 C
e Gorilla_gorilla.LT578344.1          92875466 0 - 151855818 C
e Gorilla_beringei.k141_1617988          28089 0 +     65570 C

a score=0.000000
s hg38.chrM                               1223 477 +     16569  
s Gorilla_beringei.k141_1617988          28089 278 +     65570  
i Gorilla_beringei.k141_1617988       C 0 N 0
s Gorilla_gorilla.LT578344.1          92875466 277 - 151855818  
i Gorilla_gorilla.LT578344.1          C 0 N 0
s Hoolock_leuconedys.ctg247               1164254 278 +   1558947  
i Hoolock_leuconedys.ctg247              C 0 I 699
s Hylobates_abbotti.k141_1687214          3320 278 +      5743  
i Hylobates_abbotti.k141_1687214      C 0 I 57
s Hylobates_agilis.k141_901471            1172 279 -     10707  
i Hylobates_agilis.k141_901471        C 0 I 61
s Hylobates_klossii.k141_738267           7910 278 +      9817  
i Hylobates_klossii.k141_738267       C 0 I 57
s Hylobates_pileatus_b.LG01                    100330 278 - 256317233  
i Hylobates_pileatus_b.LG01                  C 0 N 0
s Hylobates_muelleri.k141_747051          8585 278 +     16344  
i Hylobates_muelleri.k141_747051      n 1672 I 57
s Hylobates_pileatus_a.tarseq_843        1153454 278 -   1451355  
i Hylobates_pileatus_a.tarseq_843       C 0 I 2808
s Nomascus_annamensis.k141_1895142       38209 278 +     81336  
i Nomascus_annamensis.k141_1895142    C 0 I 57
s Nomascus_concolor.k141_514448           1368 278 +      3948  
i Nomascus_concolor.k141_514448       n 335 I 699
s Nomascus_gabriellae.k141_640476        16292 278 +     29887  
i Nomascus_gabriellae.k141_640476     C 0 I 57
s Nomascus_siki_b.tarseq_193       1231311 278 +   1505665  
i Nomascus_siki_b.tarseq_193      C 0 I 57
s Nomascus_siki_a.k141_859023               6162 278 +     17467  
i Nomascus_siki_a.k141_859023           C 0 I 57
s Pan_paniscus.KT153251.1                  647 478 +     16605  
i Pan_paniscus.KT153251.1             I 1 I 661
s Pan_troglodytes.CM009247.2          22468764 477 + 110513671  
i Pan_troglodytes.CM009247.2          C 0 I 3065
s Pongo_abelii.KZ622949.1              2627831 278 -   3740455  
i Pongo_abelii.KZ622949.1             C 0 N 0
s Pongo_pygmaeus.ctg239                1460662 278 +   1773800  
i Pongo_pygmaeus.ctg239               C 0 N 0
s Symphalangus_syndactylus.tarseq_252   921503 280 -    984445  
i Symphalangus_syndactylus.tarseq_252 C 0 I 57

a score=0.000000
s hg38.chrM                                1700 32 +     16569 TACTACCAG-ACAAC--CTTAGCCAAACCATTTAC
s Gorilla_beringei.k141_2316560             212 32 -      4349 CACTCACAACAAAGCTAACTAACACCAACATC---
i Gorilla_beringei.k141_2316560       N 0 N 0
s Gorilla_gorilla.LT578324.1          112570090 32 + 221943068 CACTCACAACAAAGCTAACTAACACCAACATC---
i Gorilla_gorilla.LT578324.1          N 0 N 0
s Hoolock_leuconedys.ctg201                2348596 32 +   2949979 tactcacaacaaaactgaccaacaatagtacc---
i Hoolock_leuconedys.ctg201              n 699 I 1297
s Hylobates_abbotti.k141_1687214           3655 28 +      5743 ----TacAACAAAACTGATTCATACTAGCACT---
i Hylobates_abbotti.k141_1687214      I 57 I 614
s Hylobates_agilis.k141_901471             1512 28 -     10707 ----CACAACAAAACTGACCAACAATAGCACC---
i Hylobates_agilis.k141_901471        I 61 I 609
s Hylobates_klossii.k141_738267            8245 28 +      9817 ----TacAACAAAACTGATTCATACTAGCACT---
i Hylobates_klossii.k141_738267       I 57 I 1028
s Hylobates_pileatus_b.LG19                   51143962 32 -  88884776 TACTCACAACAAAACTGACCAACAATAGTACC---
i Hylobates_pileatus_b.LG19                  N 0 I 944
s Hylobates_muelleri.k141_747051           8920 28 +     16344 ----TACAACAAAACTGATTCATACTAGCACT---
i Hylobates_muelleri.k141_747051      I 57 I 614
s Hylobates_pileatus_a.tarseq_641           13145 32 -   3128686 TACTCACAACAAAACTGACCAACAATAGTACC---
i Hylobates_pileatus_a.tarseq_641       n 2808 I 2065
s Nomascus_annamensis.k141_1895142        38544 28 +     81336 ----TACAACAAAACTGATTCATACTAGCACT---
i Nomascus_annamensis.k141_1895142    I 57 I 614
s Nomascus_concolor.k141_556697           15903 32 +     16611 CACTCACAACAAAACTAACCAACACTAATATT---
i Nomascus_concolor.k141_556697       I 335 T 14524
s Nomascus_gabriellae.k141_640476         16627 28 +     29887 ----TACAACAAAACTGATTCATACTAGCACT---
i Nomascus_gabriellae.k141_640476     I 57 I 614
s Nomascus_siki_b.tarseq_193        1231646 28 +   1505665 ----TacAACAAAACTGATTCATACTAGCACT---
i Nomascus_siki_b.tarseq_193      I 57 I 614
s Nomascus_siki_a.k141_859023                6497 28 +     17467 ----TACAACAAAACTGATTCATACTAGCACT---
i Nomascus_siki_a.k141_859023           I 57 I 614
s Pan_paniscus.CM003385.1             131186684 32 + 247869975 TACTCACAATAAAATTGACTAACAATAGCACC---
i Pan_paniscus.CM003385.1             n 661 I 964
s Pan_troglodytes.CM009240.2          110732262 32 - 128755405 TACTCACAATAAAATTGACTAACAATAGCACC---
i Pan_troglodytes.CM009240.2          n 3065 I 966
s Pongo_abelii.CM009264.2                444248 32 + 129937803 TACTCACAACAAAACTGACCAACAATAGCACC---
i Pongo_abelii.CM009264.2             N 0 I 619
s Pongo_pygmaeus.ctg419                  440805 32 -    484106 tactcacaacaaaactgaccaacaatagcacc---
i Pongo_pygmaeus.ctg419               N 0 I 958
s Symphalangus_syndactylus.tarseq_252    921840 32 -    984445 TACTCACAACAAAACTGACCAACAATAGCACC---
i Symphalangus_syndactylus.tarseq_252 I 57 I 946

a score=0.000000
s hg38.chrM                                1732 481 +     16569  
s Hoolock_leuconedys.ctg247                1165231 231 +   1558947  
i Hoolock_leuconedys.ctg247              I 699 I 179
s Hylobates_abbotti.k141_1687214           4297 231 +      5743  
i Hylobates_abbotti.k141_1687214      I 614 I 183
s Hylobates_agilis.k141_901471             2149 228 -     10707  
i Hylobates_agilis.k141_901471        I 609 N 0
s Hylobates_klossii.k141_52215               96 228 +     31181  
i Hylobates_klossii.k141_52215        n 1028 I 1067
s Hylobates_pileatus_b.LG01                  143980134 231 - 256317233  
i Hylobates_pileatus_b.LG01                  n 944 n 944
s Hylobates_muelleri.k141_747051           9562 231 +     16344  
i Hylobates_muelleri.k141_747051      I 614 I 183
s Hylobates_pileatus_a.tarseq_641           15242 228 -   3128686  
i Hylobates_pileatus_a.tarseq_641       I 2065 I 114
s Nomascus_annamensis.k141_1895142        39186 231 +     81336  
i Nomascus_annamensis.k141_1895142    I 614 I 183
s Nomascus_concolor.k141_514448            2345 231 +      3948  
i Nomascus_concolor.k141_514448       I 699 I 183
s Nomascus_gabriellae.k141_640476         17269 231 +     29887  
i Nomascus_gabriellae.k141_640476     I 614 I 183
s Nomascus_siki_b.tarseq_193        1232288 229 +   1505665  
i Nomascus_siki_b.tarseq_193      I 614 I 183
s Nomascus_siki_a.k141_859023                7139 229 +     17467  
i Nomascus_siki_a.k141_859023           I 614 I 183
s Pan_paniscus.CM003392.1              22944783 480 + 138149186  
i Pan_paniscus.CM003392.1             I 508 I 4516
s Pan_troglodytes.NBAG03002645.1           2361 481 -     33765  
i Pan_troglodytes.NBAG03002645.1      n 966 n 966
s Pongo_abelii.CM009264.2                444899 229 + 129937803  
i Pongo_abelii.CM009264.2             I 619 I 462
s Pongo_pygmaeus.ctg22                    41264 229 +  44630897  
i Pongo_pygmaeus.ctg22                n 958 I 1026
s Symphalangus_syndactylus.tarseq_719     44688 227 -     94135  
i Symphalangus_syndactylus.tarseq_719 n 946 I 1808

a score=0.000000
s hg38.chrM                                2213 146 +     16569 ACACCCACTACCT-AA-AAAATC-CCAAACATATAACTGA-ACTCCT--CACACCCAATTGGACCAAT---CTAT-CACCCTAT--AGAAGAACTAATGTTAGTATAAGTAACATG-AAAACATTC-----TCCTCCG-CATAAG-CCTGCGTCAGATTAAAA--------CAC
s Hoolock_leuconedys.ctg247                1165641 156 +   1558947 tccctaattctct-tt-attgcc-ttaaccaatctccttgggcttctaccccactcatttacaccaac---tacc-caactatc--aataaatctcggtatagcaatcctCTTATG-AGCAGGCACAGTGATCACAGG-TTC-----CACTTTAAAACTAAAAACT-CCT-TAG
i Hoolock_leuconedys.ctg247              I 179 I 1538
s Hylobates_abbotti.k141_1687214           4711 156 +      5743 TCCCTAATTCTCT-TT-ATTGCC-TTAACCAATCTCCTTGGGCTTCTACCCCACTCATTTACACCAAC---TACC-CAACTATC--AATAAATCTCGGTATAGCAATCCTCTTATG-AGCAGGCACAGTGATCACAGG-TTC-----CACTTTAAAACTAAAAACT-CCT-TAG
i Hylobates_abbotti.k141_1687214      I 183 N 0
s Hylobates_agilis.k141_1767162             497 157 +      1495 TCTCTAACTCTCT-TT-ATTGCC-TTAACCAGTCTCCTTGGACTCCTACCGGACTCATTTACACCAAC---TACC-CAACCATC--AGTAAATCTAGCTATAGCAATCCCCTTATG-AGCAGGCACAGTAATCACGGGCTTC-----CGCTTTAAAACTAATAACT-CCT-TAG
i Hylobates_agilis.k141_1767162       N 0 I 191
s Hylobates_klossii.k141_738267            9301 156 +      9817 TCCCTAATTCTCT-TT-ATTGCC-TTAACCAATCTCCTTGGGCTTCTACCCCACTCATTTACACCAAC---TACC-CAACTATC--AATAAATCTCGGTATAGCAATCCTCTTATG-AGCAGGCACAGTGATCACAGG-TTC-----CACTTTAAAACTAAAAACT-CCT-TAG
i Hylobates_klossii.k141_738267       I 1028 I 188
s Hylobates_pileatus_b.LG19                   51144938 157 -  88884776 TCTCTAACTCTCT-TT-ATTGCC-TTAACCAATCTCCTTGGACTCCTACCGGactcatttacaccaac---tacc-caaccatc--agtaaatctAGCTATAGCAATCCCCTTATG-AGCAGGCACAGTAATCACGGG-CTT----CCGCTTTAAAACTAATAACT-CCT-TAG
i Hylobates_pileatus_b.LG19                  I 944 N 0
s Hylobates_muelleri.k141_747051           9976 156 +     16344 TCCCTAATTCTCT-tt-ATTGCC-TTAACCAATCTCCTTGGGCTTCTACCCCACTCATTTACACCAAC---TACC-CAACTATC--AATAAATCTCGGTATAGCAATCCTCTTATG-AGCAGGCACAGTGATCACAGG-TTC-----CACTTTAAAACTAAAAACT-CCT-TAG
i Hylobates_muelleri.k141_747051      I 183 I 1539
s Hylobates_pileatus_a.tarseq_641           15584 157 -   3128686 GCTCTAATTCTCT-TT-ATTGCC-TTAACCAGTCTCCTTGGACTCCTACCAGACTCATTTACACCAAC---TACC-CAACCATC--AATAAATCTAGCTATAGCAATTCCCTTATG-AGTAGGCACAGTAATCACGGG-CTT----CCGCTTTAAAACTAATAACT-CCT-TAG
i Hylobates_pileatus_a.tarseq_641       I 114 I 191
s Nomascus_annamensis.k141_1895142        39600 156 +     81336 TCCCTAATTCTCT-TT-ATTGCC-TTAACCAATCTCCTTGGGCTTCTACCCCACTCATTTACACCAAC---TACC-CAACTATC--AATAAATCTCGGTATAGCAATCCTCTTATG-AGCAGGCACAGTGATCACAGG-TTC-----CACTTTAAAACTAAAAACT-CCT-TAG
i Nomascus_annamensis.k141_1895142    I 183 I 191
s Nomascus_concolor.k141_514448            2759 156 +      3948 TCCCTAATTCTCT-TT-ATTGCC-TTAACCAATCTCCTTGGGCTTCTACCCCACTCATTTACACCAAC---TACC-CAACTATC--AATAAATCTCGGTATAGCAATCCTCTTATG-AGCAGGCACAGTGATCACAGG-TTC-----CACTTTAAAACTAAAAACT-CCT-TAG
i Nomascus_concolor.k141_514448       I 183 I 191
s Nomascus_gabriellae.k141_640476         17683 156 +     29887 TCCCTAATTCTCT-TT-ATTGCC-TTAACCAATCTCCTTGGGCTTCTACCCCACTCATTTACACCAAC---TACC-CAACTATC--AATAAATCTCGGTATAGCAATCCTCTTATG-AGCAGGCACAGTGATCACAGG-TTC-----CACTTTAAAACTAAAAACT-CCT-TAG
i Nomascus_gabriellae.k141_640476     I 183 I 191
s Nomascus_siki_b.tarseq_193        1232700 156 +   1505665 TCCCTAATTCTCT-tt-ATTGCC-TTAACCAATCTCCTTGGGCTTCTAccccactcatttacaccaac---tacc-caactatc--AATAAATCTCGGTATAGCAATCCTCTTATG-AGCAGGCACAGTGATCACAGG-TTC-----CACTTTAAAACTAAAAACT-CCT-TAG
i Nomascus_siki_b.tarseq_193      I 183 I 191
s Nomascus_siki_a.k141_859023                7551 156 +     17467 TCCCTAATTCTCT-TT-ATTGCC-TTAACCAATCTCCTTGGGCTTCTACCCCACTCATTTACACCAAC---TACC-CAACTATC--AATAAATCTCGGTATAGCAATCCTCTTATG-AGCAGGCACAGTGATCACAGG-TTC-----CACTTTAAAACTAAAAACT-CCT-TAG
i Nomascus_siki_a.k141_859023           I 183 I 191
s Pan_paniscus.CM003385.1             131187680 157 + 247869975 TCTCTAATTCTCT-TT-ATTGCC-TTAACCAATCTCCTTGGACTCCTACCAGACTCATTTACGCCAAC---TACC-CAACCATC--AATAAATCTAGCTACAGCAATCCCCTTATG-AGCAGGCACAGTAATCATAGG-CTT----CTGCTTTAAAACTAAAAACT-CCT-TAG
i Pan_paniscus.CM003385.1             I 964 I 790
s Pan_troglodytes.CM009240.2          110733260 157 - 128755405 TCTCTAATTCtct-tt-attgcc-ttaaccaatctccttggactcctaccagactcatttacaccaac---tacc-caaccatc--aataaatctagctacagcaatccccttatg-agcaggcacagtaatcaTAGG-CTT----CCGCTTTAAAACTAAAAACT-CCT-TAG
i Pan_troglodytes.CM009240.2          I 966 I 791
s Pongo_abelii.CM009283.2                457830 157 +  34683425 CCTCTAATTATCT-TT-ATTGCC-TTAACCAATCTCCTTGGACTCCTACTGGACTCATTTACACCAAC---TACC-CAACCATC--AATAAATCTAGCTATAGCAATCCCCTTATG-AGCAGGCACAGTAATCACGGG-CTT----CCGCTTTAAAACTAAAAACT-CCT-TAG
i Pongo_abelii.CM009283.2             n 462 I 1069
s Pongo_pygmaeus.ctg419                  441795 157 -    484106 CCTCTAATTATCT-TT-ATTGCC-TTAACCAATCTCCTTGGACTCCTACTGGactcatttacaccaac---tacc-caaccatc--aataaatctAGCTATAGCAATCCCCTTATG-AGCAGGCACAGTAATCACGGG-CTT----ccgctttaaaactaaaaact-cct-tag
i Pongo_pygmaeus.ctg419               I 958 I 191
s Symphalangus_syndactylus.tarseq_252    922818 157 -    984445 TCTCTAATTCTCT-TT-ATTGCC-TTAACCAATCTCCTTGGACTCCTACCGGACTCATTTACACCAAC---TACC-CAACCATC--AATAAATCTAGCTGTAGCAATTCCCTTATG-AGCAGGCACAGTAATCACGGG-CTT----CCGCTTTAAAACTAATAACT-CCT-TAG
i Symphalangus_syndactylus.tarseq_252 I 946 I 191

a score=0.000000
s hg38.chrM                              2359 413 +     16569 TGAACTGACAATT-AACAGCCCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTACCCCGCCTGTTTAccaaaaacatcacctctagcatcaccagtattagaggcaccgcctgcccagtgacacatgtttaacggccgcggtaccctaaccgtgcaaaggtagcataatcacttgttccttaaatagggacctgtatgaatggctccacgagggttcagctgtctcttacttttaaccagtgaaattgacctgcccgtgaagaggcGGGCATAACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCC
s Hoolock_leuconedys.ctg201              2349925  52 +   2949979 TCAA-TCACCTTT-ATTATTCTAATTCTGTTAACCATGCTCGAATCTGCTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hoolock_leuconedys.ctg201              I 1297 I 525
s Hylobates_abbotti.k141_283004         10679  52 +     21555 TCAA-TCACCCTT-ATTATTCTAATTCTATTGACCACTCTCGAATTTGCTCTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_abbotti.k141_283004       N 0 I 1326
s Hylobates_agilis.k141_1767162           845  52 +      1495 TCAG-TCACCTTT-ATTATTCTAATTCTGTTAGCCATGCTCGAATCTGCTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_agilis.k141_1767162       I 191 N 0
s Hylobates_klossii.k141_738267          9645  52 +      9817 TCAA-TCACCTTT-ATTATTCTAATTCTATTAACCATGCTCGAATCTGCTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_klossii.k141_738267       I 188 n 188
s Hylobates_pileatus_b.LG01                   102001  52 - 256317233 TCAA-TCACCTTT-ATTATTCTAATTCTATTAACCATGCTCGAATCTGCTTTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_pileatus_b.LG01                  N 0 N 0
s Hylobates_muelleri.k141_589065         4946  52 -     23169 TCAA-TCACCCTT-ATTATTCTAATTCTATTGACCACTCTCGAATTTGCTCTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_muelleri.k141_589065      I 1672 n 1539
s Hylobates_pileatus_a.tarseq_641         15932  52 -   3128686 TCAA-TCACCTTT-ATTATTCTAATTCTATTAACCATGCTCGAATCTGCTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_pileatus_a.tarseq_641       I 191 n 191
s Nomascus_annamensis.k141_1895142      39947  52 +     81336 TCAA-TTACCCTT-ATTATTCTAATTCTATTGACCACTCTCGAATTCGCTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_annamensis.k141_1895142    I 191 I 1299
s Nomascus_concolor.k141_514448          3106  52 +      3948 TCAA-TTACCCTT-ATTATTCTAATTCTATTGACCACTCTCGAATTCACTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_concolor.k141_514448       I 191 n 191
s Nomascus_gabriellae.k141_640476       18030  52 +     29887 TCAA-TTACCCTT-ATTATTCTAATTCTATTGACCACTCTCGAATTCGCTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_gabriellae.k141_640476     I 191 I 1299
s Nomascus_siki_b.tarseq_193      1233047  52 +   1505665 TCAA-TTACCCTT-ATTATTCTAATTCTATTGACCACTCTCGAATTCGCTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_siki_b.tarseq_193      I 191 I 1296
s Nomascus_siki_a.k141_859023              7898  52 +     17467 TCAA-TTACCCTT-ATTATTCTAATTCTATTGACCACTCTCGAATTCGCTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_siki_a.k141_859023           I 191 I 1299
s Pan_paniscus.KT153251.1                1786 413 +     16605 TAAACTGACAATT-AACAGCCCAATATCTACAATCAACCAACAAGCCGTTATTACCCCCACTGTTAACCCAACACAGGCATGCACACAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATTACCAGTATTAGAGGCACCGCCTGCCCGGTGACATATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACTTGTATGAATGGCTCCACGAGGGTTTAGCTGTCTCTTACTTTCAACCAGTGAAATTGACCTACCCGTGAAGAGGCGGGCATAACATAGCAAGACGAGAAGACCCTATGGAGCTTTAATTCACTAATGCAAACAATACTTAACAAACCC
i Pan_paniscus.KT153251.1             I 661 C 0
s Pan_troglodytes.NBAG03004954.1        25222 413 +     29198 TAAACTGACAATT-AACAGCCTAATATCCACAATCAACCAACAAGCCATTATTACCCCCGCTGTTAACCCAACACAGGCATGCCCAcaaggaaaggttaaaaaaagtaaaaggaactcGGCAAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATTACCAGTATTAGAGGCACCGCCTGCCCGGTGACatatgtttaacggccgcggtaccctaaccgtgcaaaggtagcataatcacttgttccttaaatagggacttgtatgaatggctccacgagggtttagctgtctcttactttcaaccagtgaaattgacctacccgtgaagaggCGGGCATAACATAACAAGACGAGAAGACCCTATGGAGCTTTAATTCATTAATGCAAACAATACTTAACAaaccc
i Pan_troglodytes.NBAG03004954.1      n 791 I 265
s Pongo_abelii.CM009264.2              445590  52 + 129937803 TCAA-TCACCTTT-ATTATTCTAATTCTATTAACCATGCTTGAATTtgctgtgg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Pongo_abelii.CM009264.2             I 462 I 515
s Pongo_pygmaeus.ctg419                442143  52 -    484106 tcaa-tcaccttt-attattctaattctattaaccatgctcgaatctgctgtgg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Pongo_pygmaeus.ctg419               I 191 I 818
s Symphalangus_syndactylus.tarseq_252  923166  52 -    984445 TCAA-TCACCTTT-ATtattctaattctattaaccatgctcgaatctgctgtgg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Symphalangus_syndactylus.tarseq_252 I 191 I 525

a score=0.000000
s hg38.chrM                              2772 265 +     16569 ACAGGTCCTAAACTACCAAACCTGCATTAAAAA-TTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGATCCaataacttgaccaacggaacaagttaccctagggataacagcgcaatcctattctagagtccatatcaacaatagggtttacgacctcgatgttggatcaggacatcccgatggtgcagccgctattaaaggttcgt
s Pan_paniscus.KT153251.1                2199 266 +     16605 ACAGGTCCTAAACTATTAAACCTGCATTAAAAAATTTCGGTTGGGGCGACCTCGGAGCACAACCCAACCTCCGAGCAACACATGCTAAGACCTCACCAGTCAAAGCGAATTATTACATCCAATTGATCCAATTACTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCCAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGT
i Pan_paniscus.KT153251.1             C 0 C 0
s Pan_troglodytes.NBAG03002517.1         3139 265 +     35907 ACAGGTCCTAAACTATTAAACCTGCATTAAAAA-TTTCGGTTGGGGCGACCTCGGAGCACAACCCAACCTCCGAGCAATACATGCTAAGACCTCACCAGTCAAAGCGAATTACTACATCCAATTGATCCAATGacttgaccaacggaacaagttaccctagggataacagcgcaatcctattccagagtccatatcaacaatagggtttACGAcctcgatgttggatcaggacatcccgatggtgcagccgctattaaaggttcgt
i Pan_troglodytes.NBAG03002517.1      I 2442 I 597
e Symphalangus_syndactylus.tarseq_252  923218 525 -    984445 I
e Pongo_pygmaeus.ctg419                442195 818 -    484106 I
e Pongo_abelii.CM009264.2              445642 515 + 129937803 I
e Nomascus_siki_a.k141_859023              7950 1299 +     17467 I
e Nomascus_siki_b.tarseq_193      1233099 1296 +   1505665 I
e Nomascus_gabriellae.k141_640476       18082 1299 +     29887 I
e Nomascus_concolor.k141_514448          3158 191 +      3948 I
e Nomascus_annamensis.k141_1895142      39999 1299 +     81336 I
e Hylobates_pileatus_a.tarseq_641         15984 191 -   3128686 I
e Hylobates_muelleri.k141_589065         4998 1539 -     23169 I
e Hylobates_klossii.k141_738267          9697 188 +      9817 I
e Hylobates_abbotti.k141_283004         10731 1326 +     21555 I
e Hoolock_leuconedys.ctg201              2349977 525 +   2949979 I

a score=0.000000
s hg38.chrM                              3037 291 +     16569 ttgttcaacgattaaagtcctacgtgatctgagttcagaccggagtaatccaggtcggtttCTATCTACNTTCAAATTCCTCCCTGTACGAAAGGACAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATATCATCTCAACTTAGTATTATACCCACACCCACCCAAGAACAGGGTTTGTTAAGATGGCAGAGCCCGGTAATCGCATAAAACTTAAAACTTTACAGTCAGAGGTTCAATTCCTCTTCTTAACAACATACCCAT--GGCCAACCTCCTAC
s Pan_paniscus.KT153251.1                2465 290 +     16605 TTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTG-TTCTAAATTTCTCCCTGTACGAAAGGACAAGAGAAATGGGGCCTACTTCACAAAGCGCCTTCCCCAATAAATGATATGATCTCAATTTAACACCACACCTACACCCACTCAAGAACAGAGTTTGTTAAGATGGCAGAGCCCGGTAATCGCATAAAACTTAAAACTTTACAATCAGAGGTTCAATTCCTCTTCTTAACAACACACCCAT--GACTAACCTCCTAC
i Pan_paniscus.KT153251.1             C 0 I 307
s Pan_troglodytes.NBAG03004954.1        25900 290 +     29198 ttgttcaacGattaaagtcctacgtgatctgagttcagAccggagtaatccaggtcggtttctatctg-ttctaaatttctccctgtacgaaagGACAAGAGAAATGAGGCCTACTTCACAAAGCGCCTTCCCCAATAAATGATATTATCTCAATTTAACGCCATGCCAACACCCACTCAAGAACAGAGTTTGTTAAGATGGCAGAGCCCGGTAATTgcataaaacttaaaactttacAATCAGAGGTTCAATTCCTCTTCTTGACAATACACCCAT--GACCAACCTCCTAC
i Pan_troglodytes.NBAG03004954.1      I 265 n 597
e Symphalangus_syndactylus.tarseq_252  923218 525 -    984445 I
e Pongo_pygmaeus.ctg419                442195 818 -    484106 I
e Pongo_abelii.CM009264.2              445642 515 + 129937803 I
e Nomascus_siki_a.k141_859023              7950 1299 +     17467 I
e Nomascus_siki_b.tarseq_193      1233099 1296 +   1505665 I
e Nomascus_gabriellae.k141_640476       18082 1299 +     29887 I
e Nomascus_concolor.k141_514448          3158 191 +      3948 I
e Nomascus_annamensis.k141_1895142      39999 1299 +     81336 I
e Hylobates_pileatus_a.tarseq_641         15984 191 -   3128686 I
e Hylobates_muelleri.k141_589065         4998 1539 -     23169 I
e Hylobates_klossii.k141_738267          9697 188 +      9817 I
e Hylobates_abbotti.k141_283004         10731 1326 +     21555 I
e Hoolock_leuconedys.ctg201              2349977 525 +   2949979 I

a score=0.000000
s hg38.chrM                                3328 306 +     16569 TCCTCATTGTACCCATTCTAATCGCAATGGCAT-----TCCTAATGCTTACCGAA-----CGAAAAATTCTAGGCTATATACAACTACGCAAAGG-CCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACC------CGCCAC---ATCTACCATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACT-ATGAACCCCCCTCCCCATACCCAACCCCC-TGGTCAACCTCAACC----TAGGCCTCCTATTTATTCTAGCCACCTCTA
s Hoolock_leuconedys.ctg201                2350502 289 +   2949979 tacttttcacaattatcttag--gcatttgcttcactcttctacaagtctcagaatacttagaggctccctttgctatttctgatggaatttatg-gcccaacattttt------tatag----ctacaggcttttatggacttcacgtcattattggatcaacattccttactatctgccttctccaccaattaaaataccac--tttacatc-------------tagccatcattttggc--------t-ttgaagccaccgcctgatatt-gacactt-tgtaga---tgtAgtatgactatgcttgtatat-ttctatctactgatg
i Hoolock_leuconedys.ctg201              I 525 I 3
s Hylobates_abbotti.k141_450032           11657 289 -     16638 TCCTTATCACAATCCTGCTAG--GCGCCTACTTCACCCTCCTGCAAGTCTCAGAATATTTCGAAGCCCCCTTCACCATCTCCGACGGCATTTATG-GCTCCACATTCTT------TGTAG----CCACGGGCTTCCACGGACTCCATGTCATCATCGGATCAACATTCCTCATCATCTGCCTTATCCGCCAACTACTATTCCAC--TTCACATC-------------TAAACACCACTTCGGC--------T-TCGAAGCCGCCGCTTGATATT-GACACTT-CGTAGA---TGTGGTTTGACTGTTCCTATATGT-CTCCATCTACTGATG
i Hylobates_abbotti.k141_450032       n 1326 I 3
s Hylobates_agilis.k141_1199798           25544 289 -     31949 TGCTTATCACAATCCTGCTAG--GCACCTACTTTACCCTCCTGCAGGTCTCAGAATATTTTGAAGCCCCTTTCACTATCTCCGACGGCATTTATG-GCTCCACATTTTT------TGTAG----CCACGGGCTTCCACGGACTCCACGTCATTATCGGATCGACATTCCTCATCATCTGCCTCATCCGCCAACTACTATTCCAC--TTCACATC-------------TAAGCACCACTTCGGA--------T-TCGAAGCTGCCGCTTGATATT-GACATTT-CGTAGA---TGTAGTTTGACTATTCCTGTATGT-CTCCATCTACTGATG
i Hylobates_agilis.k141_1199798       N 0 I 3
s Hylobates_klossii.k141_52215             1391 289 +     31181 TACTTATCGCAATTACCTTAC--GTATTTACTTTACTCTCCTACAAGTCTCAGAATACTTCGATGCTCCCTTTGCTATTTCTGATGGAATTTATG-GCTCAACATTCTT------TACAC----CTACAGGCTTTCACGGACTTCACATCATTATTGGATCAACATTCCTCACTATCTGTCTCCCCTGCCAATTAAAATACCAC--TTTACATC-------------TAGCCATCACTTAGGC--------T-TTGAAGCCGTGGCCTGATATT-GACACTT-TGTAGA---TGTAGTATGACTATTTTTCTCTAT-TTCTATTTACTGATG
i Hylobates_klossii.k141_52215        I 1067 I 3
s Hylobates_pileatus_b.LG12                   33588140  14 + 114287294 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCTTTTACCCAT-
i Hylobates_pileatus_b.LG12                  N 0 C 0
s Hylobates_muelleri.k141_1053846          1219 289 -     16642 TCCTTATCACAATCCTGCTAG--GCACCTACTTCACCCTCCTACAGGTCTCAGAATATTTTGAAGCCCCCTTCACCATCTCCGACGGCATTTATG-GCTCCACATTCTT------TGTAG----CCACAGGCTTCCACGGACTCCATGTCATTATCGGATCAACATTCCTCATCATCTGCCTTATCCGCCAACTACTATTCCAC--TTCACATC-------------TAAACACCACTTCGGC--------T-TCGAAGCCGCCGCTTGATACT-GACACTT-CGTAGA---TGTGGTCTGACTGTTCCTATATGT-CTCCATCTACTGATG
i Hylobates_muelleri.k141_1053846     n 1539 I 3
s Hylobates_pileatus_a.tarseq_972        32247621  14 -  33407053 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCTTTTACCCAT-
i Hylobates_pileatus_a.tarseq_972       n 191 C 0
s Nomascus_annamensis.k141_685912          4069 289 -     16598 TATTTATCACGATCCTATTAG--GCATCtacttcaccctcctacagatctcagaatacttcgaggccccttttaccatttccgacggcatttatg-gctctacattttt------tgtaG----ctacaggcttccatggactccacgtcatcatcggatcaacattcctcatcatctgccttatccgccaactactatttcac--ttcacatc-------------taaacaccatttcggc--------t-tcgaagctgccgcctgatatt-gacactt-cgtaga---tgtagtatgactgttcctatatgt-ctccatctactgatg
i Nomascus_annamensis.k141_685912     n 1299 I 3
s Nomascus_concolor.k141_556697            1411 289 +     16611 TATTCATCACGATCCTATTAG--GCACCtacttcaccctcctacagatctcagaatactttgaggccccttttaccatttccgacggcatttatg-gctctacattttt------tgtaG----ccacaggcttccatggactccacgtcatcatcggatcaacattcctCATCATctgccttatccgccaactACTATTCCAC--TTCACATC-------------CAAACACCATTTCGGC--------T-TCGAAGCTGCCGCCTGATATT-GACACTT-CGTaga---tgtaGTatgactattcctatatgt-ctccatctactGATG
i Nomascus_concolor.k141_556697       T 14524 I 3
s Nomascus_gabriellae.k141_4436           22515 289 -     30492 TATTCATCACGATCCTATTAG--GCATCTACTTCACCCTCCTACAGATCTCAGAATACTTCGAGGCCCCTTTTACCATTTCCGACGGCATTTATG-GCTCTACATTTTT------TGTAG----CCACAGGCTTCCATGGACTCCACGTCATCATCGGATCAACATTCCTCATCATCTGCCTCATCCGCCAACTACTATTTCAC--TTCACATC-------------TAAACACCATTTCGGC--------T-TCGAAGCTGCCGCCTGATATT-GACACTT-CGTAGA---TGTAGTATGACTGTTCCTATATGT-CTCCATCTACTGATG
i Nomascus_gabriellae.k141_4436       n 1299 I 3
s Nomascus_siki_b.tarseq_365         116990 289 +    149072 tatttatcacgatcctattag--gcatctacttcaccctcctacagatctcagaatacttcgaggccccttttacCATTTCCGACGGCATTTATG-GTTCTACATTTTT------TGTAG----CTACAGGCTTCCATGgactccacgtcatcatcggatcaacatttctcatcatctgccttatccgccaactactatttcac--ttcacatc-------------caaacaccatttcggc--------t-tcgaagccgctgcctgatatt-gacactt-cgtaga---tgtagtatgactgttcctatatgt-ctccATCTACTGATG
i Nomascus_siki_b.tarseq_365      n 1296 I 3
s Nomascus_siki_a.k141_128009                   0  50 -     23918 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTT-CGTAGA---TGTAGTATGACTGTTCCTATATGT-CTCCATCTACTGATG
i Nomascus_siki_a.k141_128009           n 1299 I 3
s Pan_paniscus.CM003385.1             131188627 277 + 247869975 TACTTTTCACAATTATCTTAG--GCATTTGCTTCACCCTCCTACAAGTCTCAGAATACTTAGAGGCtccctttgctTTTTCTGATGGAATTTATG-GCTCAACATTTTG------TATAG----CTACAGGCTTTTATGGACTTCACATCATTTTTGGATCAACATTCcttact-----------CCGCCAATTAAAATACCAC--TTTACATC-------------TAGCCATCATTTTGGC--------T-TTGAAGCCACCACCTGATATT-GACACTA-TGTAGA---TGTAGTATGACTAC-ATTGTATAT-TTCTATCTACTGATG
i Pan_paniscus.CM003385.1             I 790 I 11
s Pan_troglodytes.CM009240.2          110734208 289 - 128755405 TACTTTTCACAATTATCTTAG--GCATTTGcttcaccctcctacaagtctcagaatacttagaggctccctttgctatttctgatggaatttatg-gcTCAAcattttt------tatag----ctacaggcttttatggacttcacgtcatttttggatcaacattccttactatctgccttctccgccaATTAAAATACCAC--TTTACATc-------------tagccatcattttggc--------t-ttgaagccaccacctgatAtt-gacacta-tgtaga---tgtagtatgactattctcgTATAT-TTCTAtctactgatg
i Pan_troglodytes.CM009240.2          I 791 I 11
s Pongo_abelii.CM009264.2                446157 289 + 129937803 TACTTTTCACAATTATCTTAG--GCATTTGCttcaccctcctacaagtctcagaatatttcgaggctccctttgctATTTCTGATGGAATTTATG-GCTCAACATTTTT------TATAG----CTACAGGCTTTTATGGACTTCACGTCATTATTGGATCAACATCCCTTACTATCTGCCTTCTCCGCCAATTAAAATATCAC--TTTACATC-------------TAGCCATCATTTTGGG--------T-TTGAAGCCACCGCCTGATATT-GATACTT-TGTAGA---TGTAGTatgactattcttgTACAT-TTCTATCTACTGATG
i Pongo_abelii.CM009264.2             I 515 I 3
s Pongo_pygmaeus.ctg22                    42519 289 +  44630897 tacttttcacaattatcttag--gcatttgcttcaccctcctacaagtctcagaatatttcgaggctccctttgctatttctgatggaatttatg-gctcaacattttt------tatag----ctacaggcttttatggacttcacgtcattattggatcaacatcccttactatctgccttctccgccaattaaaatatcac--tttacatc-------------tagccatcattttggg--------t-ttgaagccaccgcctgatatt-gatactt-tgtaga---tgtagtatgactattcttgtatat-ttctatctactgatg
i Pongo_pygmaeus.ctg22                I 1026 I 484
s Symphalangus_syndactylus.tarseq_252    923743 289 -    984445 TACTTTTCACAattatcttag--gcatttgcttcaccctcctacaagtctcagaatacttagaggctccctttgttatttctgatggaatttatg-gcccaacattttt------tataG----ctacaggcttttatggacttcacgtcattattggatcaacattccttactatctgccttctccaccagttaaaataccac--tttacatc-------------tagccatcattttggc---------tttgaagccaccgcctgatatt-gacactt-tgtaga---tgtactatgagtatgcttgtatat-ttctatctactgatg
i Symphalangus_syndactylus.tarseq_252 I 525 I 3

a score=0.000000
s hg38.chrM                               3634 257 +     16569 GCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCtagccatcattctactatcaacattactaataagtggctcCTttaacCTCTCCACCCTTatcacaacacaagaacacctctgattactcctgccatcatgacccttggccataatatgatttatctccacactagcagagaccaaccga
s Hoolock_leuconedys.ctg201               2350794   8 +   2949979 gtcttact---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hoolock_leuconedys.ctg201              I 3 I 1732
s Hylobates_abbotti.k141_450032          11949   8 -     16638 GTCCTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_abbotti.k141_450032       I 3 C 0
s Hylobates_agilis.k141_1199798          25836   8 -     31949 ATCCTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_agilis.k141_1199798       I 3 C 0
s Hylobates_klossii.k141_52215            1683   8 +     31181 ATCTTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_klossii.k141_52215        I 3 N 0
s Hylobates_pileatus_b.LG12                  33588154   2 + 114287294 ------CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_pileatus_b.LG12                  C 0 C 0
s Hylobates_muelleri.k141_1053846         1511   8 -     16642 ATCCTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_muelleri.k141_1053846     I 3 C 0
s Hylobates_pileatus_a.tarseq_972       32247635   2 -  33407053 ------CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_pileatus_a.tarseq_972       C 0 C 0
s Nomascus_annamensis.k141_685912         4361   8 -     16598 atcctact---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_annamensis.k141_685912     I 3 C 0
s Nomascus_concolor.k141_556697           1703   8 +     16611 ATCCTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_concolor.k141_556697       I 3 C 0
s Nomascus_gabriellae.k141_4436          22807   8 -     30492 ATCCTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_gabriellae.k141_4436       I 3 C 0
s Nomascus_siki_b.tarseq_365        117282   8 +    149072 ATCCTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_siki_b.tarseq_365      I 3 C 0
s Nomascus_siki_a.k141_128009                 53   8 -     23918 ATCCTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_siki_a.k141_128009           I 3 C 0
s Pan_paniscus.KT153251.1                 3062 257 +     16605 GCCTAGCCGTTTACTCAatCCTCTGATCAGGATGAGCatcaaactcgaactacgccttaatcggtgcattacgagcagtagcccaaacaatctcatacgaagtcaccctagccattattctactatcaacgctactaataagtggctccttcaatctctctacccttatcacaacacaagagcacctctgactaatcctgccaacatgacccttggccataatatgatttatctctacactagcagaaaccaaccgG
i Pan_paniscus.KT153251.1             I 307 C 0
s Pan_troglodytes.NBAG03002517.1          4001 257 +     35907 gcctagccgtttactcaatcctctgatcagggtgagcatcaaactcgaactacgccttaatcggtgcactacgagcagtagcccaaacaatctcatacgaagtcactctagccattatcctactgtcaacgctactaataagtggctccttcaatctctctacccttgtcacaacacaagagcacctctgactaatcctgccaacatgacccctggccataatatgatttatctctacactagcagagaccaaccgg
i Pan_troglodytes.NBAG03002517.1      I 597 I 29208
s Pongo_abelii.CM009264.2               446449   8 + 129937803 GTCTTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Pongo_abelii.CM009264.2             I 3 I 472
s Pongo_pygmaeus.ctg419                 443013   8 -    484106 gtcttact---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Pongo_pygmaeus.ctg419               I 818 C 0
s Symphalangus_syndactylus.tarseq_252   924035   8 -    984445 gtcttact---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Symphalangus_syndactylus.tarseq_252 I 3 I 2459

a score=0.000000
s hg38.chrM                               3891 2715 +     16569  
s Pan_paniscus.KT153251.1                 3319  171 +     16605  
i Pan_paniscus.KT153251.1             C 0 I 200
s Pan_troglodytes.NBAG03002517.1         33466  171 +     35907  
i Pan_troglodytes.NBAG03002517.1      I 29208 n 29208
e Symphalangus_syndactylus.tarseq_252   924043 2459 -    984445 I
e Pongo_pygmaeus.ctg419                 443021    0 -    484106 C
e Pongo_abelii.CM009264.2               446457  472 + 129937803 I
e Nomascus_siki_a.k141_128009                 61    0 -     23918 C
e Nomascus_siki_b.tarseq_365        117290    0 +    149072 C
e Nomascus_gabriellae.k141_4436          22815    0 -     30492 C
e Nomascus_concolor.k141_556697           1711    0 +     16611 C
e Nomascus_annamensis.k141_685912         4369    0 -     16598 C
e Hylobates_pileatus_a.tarseq_972       32247637    0 -  33407053 C
e Hylobates_muelleri.k141_1053846         1519    0 -     16642 C
e Hylobates_pileatus_b.LG12                  33588156    0 + 114287294 C
e Hylobates_agilis.k141_1199798          25844    0 -     31949 C
e Hylobates_abbotti.k141_450032          11957    0 -     16638 C
e Hoolock_leuconedys.ctg201               2350802 1732 +   2949979 I

a score=0.000000
s hg38.chrM                               6606 1 +     16569 t
s Pan_paniscus.KT153251.1                 3690 1 +     16605 T
i Pan_paniscus.KT153251.1             I 200 I 2349
e Symphalangus_syndactylus.tarseq_252   924043 2459 -    984445 I
e Pongo_pygmaeus.ctg419                 443021 0 -    484106 C
e Pongo_abelii.CM009264.2               446457 472 + 129937803 I
e Nomascus_siki_a.k141_128009                 61 0 -     23918 C
e Nomascus_siki_b.tarseq_365        117290 0 +    149072 C
e Nomascus_gabriellae.k141_4436          22815 0 -     30492 C
e Nomascus_concolor.k141_556697           1711 0 +     16611 C
e Nomascus_annamensis.k141_685912         4369 0 -     16598 C
e Hylobates_pileatus_a.tarseq_972       32247637 0 -  33407053 C
e Hylobates_muelleri.k141_1053846         1519 0 -     16642 C
e Hylobates_pileatus_b.LG12                  33588156 0 + 114287294 C
e Hylobates_agilis.k141_1199798          25844 0 -     31949 C
e Hylobates_abbotti.k141_450032          11957 0 -     16638 C
e Hoolock_leuconedys.ctg201               2350802 1732 +   2949979 I
e Pan_troglodytes.NBAG03002517.1         33637 29208 +     35907 I

a score=0.000000
s hg38.chrM                               6607 812 +     16569  
s Pan_paniscus.KT153251.1                 6040 592 +     16605  
i Pan_paniscus.KT153251.1             I 2349 I 222
s Pan_troglodytes.CM009247.2          88034298 812 - 110513671  
i Pan_troglodytes.CM009247.2          n 29208 C 0
e Symphalangus_syndactylus.tarseq_252   924043 2459 -    984445 I
e Pongo_pygmaeus.ctg419                 443021   0 -    484106 C
e Pongo_abelii.CM009264.2               446457 472 + 129937803 I
e Nomascus_siki_a.k141_128009                 61   0 -     23918 C
e Nomascus_siki_b.tarseq_365        117290   0 +    149072 C
e Nomascus_gabriellae.k141_4436          22815   0 -     30492 C
e Nomascus_concolor.k141_556697           1711   0 +     16611 C
e Nomascus_annamensis.k141_685912         4369   0 -     16598 C
e Hylobates_pileatus_a.tarseq_972       32247637   0 -  33407053 C
e Hylobates_muelleri.k141_1053846         1519   0 -     16642 C
e Hylobates_pileatus_b.LG12                  33588156   0 + 114287294 C
e Hylobates_agilis.k141_1199798          25844   0 -     31949 C
e Hylobates_abbotti.k141_450032          11957   0 -     16638 C
e Hoolock_leuconedys.ctg201               2350802 1732 +   2949979 I

a score=0.000000
s hg38.chrM                               7419 865 +     16569  
s Pan_paniscus.KT153251.1                 6854 867 +     16605  
i Pan_paniscus.KT153251.1             I 222 I 1
s Pan_troglodytes.CM009247.2          88035110 865 - 110513671  
i Pan_troglodytes.CM009247.2          C 0 I 1
e Symphalangus_syndactylus.tarseq_252   924043 2459 -    984445 I
e Pongo_pygmaeus.ctg419                 443021   0 -    484106 C
e Pongo_abelii.CM009264.2               446457 472 + 129937803 I
e Nomascus_siki_a.k141_128009                 61   0 -     23918 C
e Nomascus_siki_b.tarseq_365        117290   0 +    149072 C
e Nomascus_gabriellae.k141_4436          22815   0 -     30492 C
e Nomascus_concolor.k141_556697           1711   0 +     16611 C
e Nomascus_annamensis.k141_685912         4369   0 -     16598 C
e Hylobates_pileatus_a.tarseq_972       32247637   0 -  33407053 C
e Hylobates_muelleri.k141_1053846         1519   0 -     16642 C
e Hylobates_pileatus_b.LG12                  33588156   0 + 114287294 C
e Hylobates_agilis.k141_1199798          25844   0 -     31949 C
e Hylobates_abbotti.k141_450032          11957   0 -     16638 C
e Hoolock_leuconedys.ctg201               2350802 1732 +   2949979 I

a score=0.000000
s hg38.chrM                               8284 325 +     16569 CTCTAGAGCCCACTGTAAAGCTAACTTAGCATTAACCTTTTAAGTTAAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCC-ACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCC
s Pan_paniscus.KT153251.1                 7722 326 +     16605 CTCCAGAGCTCACTGTAAAGCTAACCTAGCATTAACCTTTTAAGTTAAAGATTAAGAGGACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACCGCCGTATGACCCACCACAATTACCCCTATACTCCTTACACTATTTCTTATCACCCAACTAAAAATATTAAATTCGAATTACCATCTACCCCCCTCACCAAAACCCATAAAAATAAAAAACTACAATAAACCCTGAGAACCAAAATGAACGAAAATCTATTCGCTTCATTCGCTGCCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTCCCCCC
i Pan_paniscus.KT153251.1             I 1 I 1
s Pan_troglodytes.CM009247.2          88035976 325 - 110513671 CTCCAGAGCTCACTGTAAAGCTAACCTAGCATTAACCTTTTAAGTTAAAGATTAAGAGGACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACCGCCGTATGACCCACCATAATTACCCCTATACTCCTTACACTATTTCTCATCACccaactaaaaatattaaattcaaattACCATCTACCCCCCTCACcaaaacccataaaaataaaaaactacaataAACCCTGAGAACCAAAATGAACGAAAATCTATTcgcttcattcattgccCCC-ACAATCCTAGGCCTGCCCGCCGCAGTACTGATCATTCTATTCCCCCC
i Pan_troglodytes.CM009247.2          I 1 I 239
e Symphalangus_syndactylus.tarseq_252   924043 2459 -    984445 I
e Pongo_pygmaeus.ctg419                 443021   0 -    484106 C
e Pongo_abelii.CM009264.2               446457 472 + 129937803 I
e Nomascus_siki_a.k141_128009                 61   0 -     23918 C
e Nomascus_siki_b.tarseq_365        117290   0 +    149072 C
e Nomascus_gabriellae.k141_4436          22815   0 -     30492 C
e Nomascus_concolor.k141_556697           1711   0 +     16611 C
e Nomascus_annamensis.k141_685912         4369   0 -     16598 C
e Hylobates_pileatus_a.tarseq_972       32247637   0 -  33407053 C
e Hylobates_muelleri.k141_1053846         1519   0 -     16642 C
e Hylobates_pileatus_b.LG12                  33588156   0 + 114287294 C
e Hylobates_agilis.k141_1199798          25844   0 -     31949 C
e Hylobates_abbotti.k141_450032          11957   0 -     16638 C
e Hoolock_leuconedys.ctg201               2350802 1732 +   2949979 I

a score=0.000000
s hg38.chrM                               8609 239 +     16569 TCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCT
s Pan_paniscus.KT153251.1                 8049 239 +     16605 TCTACTGGTTCCCACCTCTAAACATCTCATCAACAACCGACTAATTACCACCCAACAATGACTAATTCAACTGACCTCAAAACAAATAATAACTATACACAACACTAAAGGACGAACCTGATCTCTCATACTAGTATCCTTAATTATTTTTATTGCCACAACTAATCTTCTCGGACTTCTACCTCACTCATTCACACCAACCACCCAACTATCTATAAACCTAGCCATGGCTATCCCCC
i Pan_paniscus.KT153251.1             I 1 I 1
s Pan_troglodytes.CM009251.2          68972530 239 +  95599650 TCTACTGGTCCCCACTTCTAAACATCTCATCAACAACCGACTAATTACCACCCAACAATGACTAATTCAACTGACCTCAAAACAAATAATAACTATACACAACACTAAAGGACGAACCTGATCTCTCATACTAGTATccttaatcatttttattacCACAACCAATCTTCTCGGACTTCTACCCCACTCATTCACACCAACCACCCAACTATCTATAAACCTAGCCATGGCTATCCCCC
i Pan_troglodytes.CM009251.2          n 239 I 3983
e Symphalangus_syndactylus.tarseq_252   924043 2459 -    984445 I
e Pongo_pygmaeus.ctg419                 443021   0 -    484106 C
e Pongo_abelii.CM009264.2               446457 472 + 129937803 I
e Nomascus_siki_a.k141_128009                 61   0 -     23918 C
e Nomascus_siki_b.tarseq_365        117290   0 +    149072 C
e Nomascus_gabriellae.k141_4436          22815   0 -     30492 C
e Nomascus_concolor.k141_556697           1711   0 +     16611 C
e Nomascus_annamensis.k141_685912         4369   0 -     16598 C
e Hylobates_pileatus_a.tarseq_972       32247637   0 -  33407053 C
e Hylobates_muelleri.k141_1053846         1519   0 -     16642 C
e Hylobates_pileatus_b.LG12                  33588156   0 + 114287294 C
e Hylobates_agilis.k141_1199798          25844   0 -     31949 C
e Hylobates_abbotti.k141_450032          11957   0 -     16638 C
e Hoolock_leuconedys.ctg201               2350802 1732 +   2949979 I

a score=0.000000
s hg38.chrM                               8848 689 +     16569  
s Pan_paniscus.KT153251.1                 8289 691 +     16605  
i Pan_paniscus.KT153251.1             I 1 I 1
s Pan_troglodytes.CM009247.2          88036540 689 - 110513671  
i Pan_troglodytes.CM009247.2          I 239 C 0
e Symphalangus_syndactylus.tarseq_252   924043 2459 -    984445 I
e Pongo_pygmaeus.ctg419                 443021   0 -    484106 C
e Pongo_abelii.CM009264.2               446457 472 + 129937803 I
e Nomascus_siki_a.k141_128009                 61   0 -     23918 C
e Nomascus_siki_b.tarseq_365        117290   0 +    149072 C
e Nomascus_gabriellae.k141_4436          22815   0 -     30492 C
e Nomascus_concolor.k141_556697           1711   0 +     16611 C
e Nomascus_annamensis.k141_685912         4369   0 -     16598 C
e Hylobates_pileatus_a.tarseq_972       32247637   0 -  33407053 C
e Hylobates_muelleri.k141_1053846         1519   0 -     16642 C
e Hylobates_pileatus_b.LG12                  33588156   0 + 114287294 C
e Hylobates_agilis.k141_1199798          25844   0 -     31949 C
e Hylobates_abbotti.k141_450032          11957   0 -     16638 C
e Hoolock_leuconedys.ctg201               2350802 1732 +   2949979 I

a score=0.000000
s hg38.chrM                               9537 386 +     16569 aattaggagggcactggcccccaacaggcatcaccccgctaaatcccctagaagtcccactcctaaacacatccgtattactcgcatcaggagtatcaatcacctgagctcaccatagtctaatagaaaacaaccgaaaccaaataattcaagcactgcttattacaattttactgggtctctattttaccctcctacaagcctcagagtacttcgagtctcccttcaccatttccgacggcatctacggctcaacattttttGtagccacaggcttccacggacttcacgtcattattggctcaactttcctcaCTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAAGCCGCCGCC
s Pan_paniscus.KT153251.1                 8981 163 +     16605 AGCTAGGAGGACACTGACCCCCAACAGGTATTACCCCACTAAATCCCCTAGAAGTTCCACTCCTAAACACATCTGTATTACTCGCATCAGGAGTATCAATCACTTGAGCCCATCACAGCTTAATAGAAAATAACCGAAACCAAATAATTCAAGCACTACTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Pan_paniscus.KT153251.1             I 1 I 223
s Pan_troglodytes.CM009247.2          88037229 163 - 110513671 agctaGGAGGACACTGACCCCCAACAGGTATCAccccactaaatcccctagaagtcccactcctaaacacatctgtattactcgcatcaggagtatcaattacttgagcccatcacagcttaatAGAAAATAACCGAAACCAAATGATTCAAGcactgcttat-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Pan_troglodytes.CM009247.2          C 0 I 216
e Symphalangus_syndactylus.tarseq_252   924043 2459 -    984445 I
e Pongo_pygmaeus.ctg419                 443021   0 -    484106 C
e Pongo_abelii.CM009264.2               446457 472 + 129937803 I
e Nomascus_siki_a.k141_128009                 61   0 -     23918 C
e Nomascus_siki_b.tarseq_365        117290   0 +    149072 C
e Nomascus_gabriellae.k141_4436          22815   0 -     30492 C
e Nomascus_concolor.k141_556697           1711   0 +     16611 C
e Nomascus_annamensis.k141_685912         4369   0 -     16598 C
e Hylobates_pileatus_a.tarseq_972       32247637   0 -  33407053 C
e Hylobates_muelleri.k141_1053846         1519   0 -     16642 C
e Hylobates_pileatus_b.LG12                  33588156   0 + 114287294 C
e Hylobates_agilis.k141_1199798          25844   0 -     31949 C
e Hylobates_abbotti.k141_450032          11957   0 -     16638 C
e Hoolock_leuconedys.ctg201               2350802 1732 +   2949979 I

a score=0.000000
s hg38.chrM                               9923 70 +     16569 TGATACTGGCATtttgtagatgtggtttgactatttctgtatgtctccatctattgatgagggtcttact
s Pan_paniscus.KT153251.1                 9367 70 +     16605 TGATACTGGCACTTCGTAGATGTAGTCTGACTATTTCTATATGTCTCCATCTACTGATGAGGATCTTACT
i Pan_paniscus.KT153251.1             I 223 I 2132
s Pan_troglodytes.CM009247.2          88037608 70 - 110513671 TGATACTGGCACttcgtagatgtagtctgactatttctatatgtctccatctactgatgaggatcctact
i Pan_troglodytes.CM009247.2          I 216 I 2090
e Symphalangus_syndactylus.tarseq_252   924043 2459 -    984445 I
e Pongo_pygmaeus.ctg419                 443021  0 -    484106 C
e Pongo_abelii.CM009264.2               446457 472 + 129937803 I
e Nomascus_siki_a.k141_128009                 61  0 -     23918 C
e Nomascus_siki_b.tarseq_365        117290  0 +    149072 C
e Nomascus_gabriellae.k141_4436          22815  0 -     30492 C
e Nomascus_concolor.k141_556697           1711  0 +     16611 C
e Nomascus_annamensis.k141_685912         4369  0 -     16598 C
e Hylobates_pileatus_a.tarseq_972       32247637  0 -  33407053 C
e Hylobates_muelleri.k141_1053846         1519  0 -     16642 C
e Hylobates_pileatus_b.LG12                  33588156  0 + 114287294 C
e Hylobates_agilis.k141_1199798          25844  0 -     31949 C
e Hylobates_abbotti.k141_450032          11957  0 -     16638 C
e Hoolock_leuconedys.ctg201               2350802 1732 +   2949979 I

a score=0.000000
s hg38.chrM                                9993 476 +     16569 cttttAGTATAAATAGTACCGTTAACTTCCAATTAACTAGTTTTGACAACATTCAAAA----------AAGAGTAATAAACTTCGCCTTAATTTTAATAATCAACaccctcctagcCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGGCtacatagaaaaa-TCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGtcccttt-ctccataaaattcttcttagtagctattaccttcttattatttgatCTAGAAATTGCCCTCCTTTTACCCCTACCATGAGCCCTAcaaacAACTAA----CCTGCCACTAATAGTTATGTCATCCCTCT-TATTAATCATCATCCTAGCCCTAAGTCTGGCCTATGAGTGACTACAAAAAGGATTAGACTGAACCGAATTGGTATATAGTTTAAA-CAAAAC-GAATGATTTCGACTCATT-AAATTATGATAA--TCATATTTACCAA
s Hoolock_leuconedys.ctg1055                  3385 477 +     26648 cttttagtataagcagtactgttaacttccaattaaccagcttcgatgatactcgaaa----------aagagtagtgaacctggcattagccctaacaattaatacactcctggccttgttactAAtaaccatcacattctgattaccacaactcaacacctacatagaaaaa-gccaacccctatgaatgtggatttgacccactatctcccgcccgcatcccAtt-ctccataaaattttttctagtcgcaatcactttcttactatttgacctagaaatcgccctactactgcccctaccatgagccctccaaacgacaag----ccCGTcgctaacaatcatgtcatcactca-cattaatcaccattttgatcctaagtttagcttacgaatgatcacaaaaaggactagactgggtcgaattggtAAGTAGTTTAAACTAAAACA-AATGATTTCGACTCATTAAA-TTATGGCA--ACCATACTTATCAA
i Hoolock_leuconedys.ctg1055             n 1732 n 1732
s Hylobates_abbotti.k141_450032           11957 477 -     16638 CTTTTAGTATAAACAGTACTGTTGACTTCCAATTAACCAGTTTCGATGACGCTCGAAA----------AAGAGTAGTGAATCTGGCATTAGCCCTAATAATTAATACACTCCTAGCCTTACTACTAATAACTATTACATTCTGACTACCACAACTCAACACCTACATAGAAAAAA-CCAACCCCTACGAATGCGGATTCGACCCGCTATCCCCCGCCCGCATCCCATT-CTCCATAAAATTCTTCCTGGTCGCAATCACCTTCCTACTATTCGACCTAGAAATCGCCCTACTACTACCCCTACCATGAGCCCTACAAACAACAAG----CCCCTCACTAGCAATCACATCATCACTCA-CATTAATCACCATTTTAATCCTAAGCCTAGCCTACGAATGATCACAAAAAGGGCTAGACTGGGTCGAATTGGTAAGTAGTTTAAACTAAAACA-AATGATTTCGACTCATTAAA-TTATGGCA--ACCATACTTATCAA
i Hylobates_abbotti.k141_450032       C 0 n 0
s Hylobates_agilis.k141_1199798           25844 477 -     31949 CTTTTAGTATAAACAGTACTGTTAACTTCCAATTAACCAGCTTCGATAACGCTCGAAA----------AAGAGTAATGAACCTGGCATTAGCCCTAACAATTAATACACTCCTGGCCTTGCTACTAATAACTATTACATTCTGACTACCACAGCTCAACACCTACATAGAAAAAA-CCAACCCCTACGAATGCGGATTTGACCCACTATCCCCCGCCCGCATCCCATT-CTCCATAAAATTCTTCCTGGTCGCAATCACTTTCCTACTATTCGACCTAGAAATTGCTCTACTACTACCCCTACCATGGGCCCTGCAAACAACAAG----CCCCTCACTAACAATCATATCATCACTCA-CATTAATCACCATTTTAATCCTAAGCTTGGTTTACGAATGATCACAAAAAGGCCTGGACTGGGTTGAATTGGTAAGTAGTTTAATCTAAAACA-AATGATTTCGACTCATTAAA-TTATGGCA--ACCATACTTATCAA
i Hylobates_agilis.k141_1199798       C 0 N 0
s Hylobates_klossii.k141_583083            1244 477 -      6418 CTTTTAGTATAAATAGTACTGTTAACTTCCAATTAACCAGCTTCGATAACGCTCGAAA----------AAGAGTAATGAACCTGGCATTAGCCCTAATAATTAATACACTCCTGGCCTTACTACTAATAACTATTACATTCTGACTACCACAGCTCAACACCTACATAGAAAAAG-CCAACCCCTATGAATGTGGATTTGACCCACTATCCCCCGCCCGCATCCCATT-CTCCATAAAATTCTTCCTAGTCGCAATCACTTTCCTACTATTTGACCTAGAAATCGCTCTACTACTACCCCTACCATGAGCCCTCCAAACAACGAG----CCCCCCGCTAACAATCACGTCATCACTTA-CATTAATCACCATTTTAGTCCTAAGCTTAGCTTACGAATGATCACAAAAGGGACTAGACTGGGTTGAATTGGTAAGTAGTTTAAGCTAAAACA-AATGATTTCGACTCATTAAA-TTATGGCA--ACCATACTTATCAA
i Hylobates_klossii.k141_583083       N 0 N 0
s Hylobates_pileatus_b.LG12                   33588156  31 + 114287294 CTCCAATAA-------TACTAATCATAACTTAGAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_pileatus_b.LG12                  C 0 N 0
s Hylobates_muelleri.k141_1053846          1519 477 -     16642 CTTTTAGTATAAACAGTACCGTTGACTTCCAATTAACCAGTTTCGATGACGCTCGAAA----------AAGAGTAGTGAATCTGGCATTAGCCCTAATAATTAACACACTCCTAGCCTTACTACTAATAACTATTACATTCTGACTACCACAGCTCAACACCTACATAGAAAAGA-CTAACCCCTACGAATGCGGATTCGACCCACTATCCCCCGCCCGCATCCCCTT-CTCCATAAAATTCTTCCTGGTCGCAATCACTTTCCTACTATTCGACCTAGAAATCGCCCTACTACTACCCCTACCATGAGCCCTACAAACAACAAG----CCCCTCACTAGCAATCACATCATCACTCA-CACTAATCACCATTTTAATCCTAAGCCTAGCTTACGAGTGATCACAAAAAGGGCTAGACTGGGCCGAATTGGTAAGTAGTTTAAACTAAAACA-AATGATTTCGACTCATTAAA-TTATGGCA--ACCATACTTATCAA
i Hylobates_muelleri.k141_1053846     C 0 n 0
s Hylobates_pileatus_a.tarseq_972        32247637  31 -  33407053 CTCCAATAA-------TACTAATCATAACTTAGAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Hylobates_pileatus_a.tarseq_972       C 0 n 0
s Nomascus_annamensis.k141_685912          4369 477 -     16598 cttttagtataaacagtactattaacttccaattaatcagtttcgataacgctcgaaa----------aagaGTAATGAACCTAGCATTAGCCATAATGGTCAGTACACTCCTAGCCCtattactaataattatcaCATTCTGGCTACCACAACTCAACACCTACATAGAAAAA-TCTAACCCCTACGAATGCGGATTTGACCCACTATCCCCCGCCCGTATCCCATT-CTCCATAAAATTCTTTCTCATCGCAATCACTTTCCTGCTATTCGACCTGGAAATCGCTCTACTACTACCCCTACCATGAGCTCTCCAAACGACGAA----CCCATCACTAACGATCACGTCGTCACTCA-CATTAATTATCATTCTAATCCTAAGTCTGGCTTACGAATGATCACAAAAGGGACTAGACTGGGTCGAATTGGTAAGTAGTTTAAACTAAAACA-AATGATTTCGACTCATTAAA-TTATGGCA--ACCATACTTATCAA
i Nomascus_annamensis.k141_685912     C 0 I 1200
s Nomascus_concolor.k141_556697            1711 477 +     16611 CTTTTAGTATAAACAGTACTATTAACTTCCAATTAATCAGCTTCGATAACACTCGAAA----------AAGAGTAATGAACCTAGCACTAGCCATAATAATCAACACACTCCTAGCCTTATTACTAATAACTATCACATTCTGACTACCACAACTCAACACCTACATAGAAAAA-TCTAACCCCTACGAATGCGGATTTGACCCACTATCCCCCGCCCGTATCCCATT-CTCCATAAAATTCTTTCTCGTCGCAATCACTTTCCTGCTATTCGACCTAGAAATCGCTCTACTACTACCTCTACCATGAGCCCTCCAAACAACAAA----TCCATTACTAACGATCACGTCGTCACTTA-CATTAATTACCATTCTAACCCTAAGTCTGGCTTACGAATGATCACAAAAAGGACTAGACTGGGTCGAGTTGGTAAGTAGTTTAAACTAAAACA-AATGATTTCGACTCATTAAA-TTATGGCA--ACCATACTTATCAA
i Nomascus_concolor.k141_556697       C 0 I 1200
s Nomascus_gabriellae.k141_4436           22815 477 -     30492 CTTTTAGTATAAACAGTACTATTAACTTCCAATTAACCAGTTTCGATAACGCTCGAAA----------AAGAGTAATGAACCTAGCACTAGCCATAATGGTCAGTACACTCCTAGCCCTATTACTAATAATTATCACATTCTGGCTACCACAACTCAACACCTACATAGAAAAA-TCTAACCCCTACGAATGCGGATTTGACCCACTATCCCCCGCCCGTATCCCATT-CTCCATAAAATTCTTTCTCGTCGCAATCACTTTCCTGCTATTCGACCTGGAAATCGCTCTACTACTACCTCTACCATGAGCTCTCCAAACAACAAA----CCCATCACTAACGATCGCGTCGTCACTCA-CATTAATTATCATTCTAATCCTAAGTCTGGCTTACGAATGATCACAAAAGGGACTAGACTGGGTCGAATTGGTAAGTAGTTTAAACTAAAACA-AATGATTTCGACTCATTAAA-TTATGGCA--ACCATACTTATCAA
i Nomascus_gabriellae.k141_4436       C 0 I 1200
s Nomascus_siki_b.tarseq_365         117290 477 +    149072 CTTTTAGTATAAACAGTACTATTAACTTCCAATTaatCAGCTTCGACAAGGCTCGAAA----------AAGAGTAATGAACCTAACATTAGCCATAACGATCAGTACACTCCTAGCCTTATTACTAATAATTATCACATTCTGACTACCACAACTCAACACCTACATAGAAAAA-TCTAACCCCTACGAATGCGGATTTGACCCACTGTCCCCCGCCCGTATCCCATT-CTCCATAAAATTCTTTCTCGTCGCAATCACTTTCCTGCTATTCGACCTAGAAATCGCTCTACTACTGCCTCTACCATGAGCTCTCCAAACAACAAA----CCCATCACTAACGATCACGTCGTCACTCA-CATTAATTATCATTCTAATCCTAAGTCTGGCTTACGAATGATCACAAAAAGGACTAGACTGGGTCGAATTGATAAGTAGTTTAAACTAAAACA-AATGATTTCGACTCATTAAA-TTATGGCA--ACCATACTTATCAA
i Nomascus_siki_b.tarseq_365      C 0 n 0
s Nomascus_siki_a.k141_128009                  61  38 -     23918 CTTTTAGTATAAACAGTACTATTAACTTCCAATTAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i Nomascus_siki_a.k141_128009           C 0 n 0
s Pan_paniscus.CM003385.1             131188915 473 + 247869975 CTTTTAGTATAAACAGTACCATTGACTTCCAATCAATTAGTTTCGATAGTATCTGAAA----------AAGAGTAATTAACCTAACATTAGCCCTAGTAATCAACACCCTACTAGCCCTGTCACTTACAGCTATTACATTCTGGCTCCCACAACttaatatttatacagaaaaa-tcCAGCCCCTACAAATGCGGATTTGACTCGTTATCCTCTGCCCTCATTCCTTT-CTCCacaaaattatttctagtagccatcacattcctcctatttgacttagaaatcgccctactactaccctTACCATGAGCCCTTcaaac----aa----ccTGACACTAATACTTAGTACATCCTTTA-TGCTAGTTATCATTTTAATCCTAGGGTTAACTTATGAATGAACTCAAAAAGGATTAGACTGAACTGAATTGGTAAGTAGTTTAAgccaaaat-aaatgattttgacTCATT-AG-TTATGATAG-AACATGTTTACCAA
i Pan_paniscus.CM003385.1             I 11 C 0
s Pan_troglodytes.CM009240.2          110734508 477 - 128755405 cttTTAGTATAAACAGTACCATTGACTTCCAATCAATTagtttTGATAGTatctgaaa----------aagagtaattaacctaacactagccctagtaatcaacaccctactagccctgtcaCTTATAGCTGTTACATTCTGGCTCCCACAacttaatatttatacagaaaaa-tccAGCCCCTACGAATGAGGATTTGACTCGTTATCCTCCGCCCTCATTccttt-ctccataaaatcatttctagtagccatcacattcctcctatttgacttagaaatcaccctactgctacccttaccatgagcccttcaaac----aagtaacctgacactaacaattagtacatccctta-tgcTAGTTATCATTTTAAGCCTAGGTTTAACTTATGAATGAACTCAAAAAGGATTAGACTGAACTGAATTGGTAAGTAGTTTAAgccaaaat-aaatgattttgacTCATT-AG-TTATGATAG-AACATGTTTACCAA
i Pan_troglodytes.CM009240.2          I 11 C 0
s Pongo_abelii.CM009283.2                459056 477 +  34683425 CTTTTAGTATAAACAGTACCATTGACTTCCAATCAATTAGTTTCGATAGTATCTGAAA----------AAGAGTAATTACCCTAACATTAGCCCTAGTAATCAACACCCTACTAGCCCTGTCACTTATAGCTATTACATTCTGGCTCCCACAACTtaatatttatacagaaaaa-tcCAGCCCCTACAAATGCGGATTTGACTCGTTATCCTCCACCCGCATTCCTTT-CTccataaaattatttctagtaGCCATCACATTCCTCCTATTTGACTTAGAAATCGCCCTACTGCTACCCTTACCATGAGCCCTTCAAACAAGTAA----CCTGACACTAATAATTAGTACATCCCTTA-TGCTAGTTATCATTTTAATCCTAAGGTTAACTTATGAATGAACTCAAAAAGGATTAGACTGAACTGAATTGGTAAGTAGTTTAAgccaaaat-aaatgattttgacTCATT-AG-TTAGGATAG-AACATGTTTACCAA
i Pongo_abelii.CM009283.2             I 1069 I 671
s Pongo_pygmaeus.ctg419                  443021 477 -    484106 cttttagtataaacagtaccattgacttccaatcaattagtttcgatagtatctgaaa----------aagaGTAATTACCCTAACATTAGCCCTAGTaatcaacaccctactagccctgtcacttatagctattacattCTGGctcccacaacttaatatttatacagaaaaa-tccagcccctacaaatgcggatttgacttgttatcctccacccgcattccttt-CTCCATAAAATTATTTCTAGTAGCCATCACATTCCTCCTATTTGACTTAGAAATCGCCCTACTGCTACCCTTACCATGAGcccttcaaacaagtaa----cctgacactaataattagtacatcccttg-tgctagttatcattttaatcctagggttaacttatgaatgaactcaaaaaggattagactgaactgagttggtaagtagtttaagccaaaAT-AAATGATTTTGACTCATT-AG-TTAGGATAG-AACATGTTTACCAA
i Pongo_pygmaeus.ctg419               C 0 I 168
s Symphalangus_syndactylus.tarseq_719     46723 313 -     94135 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccagcccctacgaatgcggatttggctcgttatcctccacccgccttccttt-ctccataaaatcatttctagtagccatcacattcctcctatttgacttagaaatcgccctactactacccttaccatgagcccttcaaacaagtaa----cctgacactaacaattagtacatccctta-tgctagttatcattttaatcccagggttaacttatgaatgaactcaaaaaggattagactgaactgaattggtaactagtttaaGCCAAAAT-AAATGATTTTGACTCATT-AG-ttatgacag-aacatgtttaccag
i Symphalangus_syndactylus.tarseq_719 I 1808 I 670

a score=0.000000
s hg38.chrM                                10469 102 +     16569 ATGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACT-AG-TATATC-----GCTCACACCTCATATCCT-CCCTACTATGCCTAGAA
s Hoolock_leuconedys.ctg247                 1167335 102 +   1558947 ATGCCCTCTATTTATATCAATATCATATTAGCATATACCATATCACTTCTGGGGATATTAATCTATcgatcccacctgata--------gcatccctaatatgcctagaa
i Hoolock_leuconedys.ctg247               I 1538 C 0
s Hylobates_abbotti.k141_283004            12057 102 +     21555 ATGCCCTCTATTTGTATAAATATCATATTAGCATATACTATATCACTTCTGGGGATATTAATCTATCCATCCCACCTGATA--------TCATCCCCACTATGCCTAGAA
i Hylobates_abbotti.k141_283004        I 1326 N 0
s Hylobates_agilis.k141_536749              4342 102 +     10928 ATGCCCTCTATTTATATCAATATCATATTAGCATATACCATATCACTTCTGGGGATATTAATCTATCGATCCCACCTGATA--------GCATCCCTAATACGCCTAGAA
i Hylobates_agilis.k141_536749         N 0 I 76
s Hylobates_klossii.k141_264286            11703 102 +     18225 ATGCCCTCTATTTATATCAATATCATATTAGCATATACCATATCACTTCTGGGGATATTAATCTATCGATCCCACCTGATA--------GCATCCCTAATACGCCTAGAA
i Hylobates_klossii.k141_264286        N 0 C 0
s Hylobates_pileatus_b.LG01                   143982182 102 - 256317233 ATgccctctatttatatcaatatcatattagcatataccatatcacttctggggatattaatctatcgatcccacctgata--------gcatccctaatacgcctagaa
i Hylobates_pileatus_b.LG01                   N 0 C 0
s Hylobates_muelleri.k141_747051           11671 102 +     16344 atgccctctatttatatcaatatcatattagcatataccatatcacttCTGGGGATATtaatctatcgatcccacctgata--------gcaTCCCTAATACGCCTAGAa
i Hylobates_muelleri.k141_747051       I 1539 I 76
s Hylobates_pileatus_a.tarseq_843          1156540 102 -   1451355 ATGCCCTCTATTTATATCAATATCATATTAGCATATACCATATCACTTCTGGGGATATTAATCTATCGATCCCACCTGATA--------GCATCCCTAATACGCCTAGAA
i Hylobates_pileatus_a.tarseq_843        I 2808 C 0
s Nomascus_annamensis.k141_1895142         41298 102 +     81336 ATGCCCTCTATTTATATCAAtatCATATTAGCATATACCTTATCACTTCTGGGGATATTAATCTATCgatcccacctgata--------gcatccctaatatgcctagaa
i Nomascus_annamensis.k141_1895142     I 1299 C 0
s Nomascus_concolor.k141_894066              650 102 -      8670 ATGCCCTCTATTTATATCAATATCATATTAGCATATACCTTATCACTTCTGGGGATATTAATCTATCGATCCCACCTGATA--------GCATCCCTAATATGCCTAGAA
i Nomascus_concolor.k141_894066        n 1200 C 0
s Nomascus_gabriellae.k141_640476          19381 102 +     29887 ATGCCCTCTATTTATATCAATATCATATTAGCATATACCTTATCACTTCTGGGGATATTAATCTATCGATCCCACCTGATA--------GCATCCCTAATATGCCTAGAA
i Nomascus_gabriellae.k141_640476      I 1299 C 0
s Nomascus_siki_b.tarseq_193         1234395 102 +   1505665 ATGCCCTCTATTTATATCAATATCATATTAGCATATACCTTATCACTTCTGGGGATATTAATCTATCGATCCCACCTGATA--------ACATCCCTAATATGCCTAGAA
i Nomascus_siki_b.tarseq_193       I 1296 I 76
s Nomascus_siki_a.k141_859023                 9249 102 +     17467 ATGCCCTCTATTTATATCAATATCATATTAGCATATACCTTATCACTTCTGGGGATATTAATCTATCGATCCCACCTGATA--------ACATCCCTAATATGCCTAGAA
i Nomascus_siki_a.k141_859023            I 1299 I 76
s Pan_paniscus.CM003385.1              131189388 102 + 247869975 ATGCCctctatttacataaatattatattcaCATACACCATGTCACTTCTGGGGGTATTAATCTATCCATCCCACCTAATA--------TCATCCCTACTATGCCTACAA
i Pan_paniscus.CM003385.1              C 0 C 0
s Pan_troglodytes.CM009240.2           110734985 102 - 128755405 ATGCCCtctatttacataaatattatattcaCATACACCATGTCACTTCTGGGGGTATTAATCTATCCATCCCACCTAATA--------TCATCCCTACTATGCCTAGAA
i Pan_troglodytes.CM009240.2           C 0 C 0
s Pongo_abelii.CM009264.2                 446929 102 + 129937803 ATGCCCtctatttacataaatattatattcGCATATACCATATCACTTCTGGGGGTGTTAATCTATCGATACCACCTAATA--------TCATCCCTACTATGCCTAGAA
i Pongo_abelii.CM009264.2              I 472 C 0
s Pongo_pygmaeus.ctg22                     43292  98 +  44630897 ATGCCCTC----TACATAAAtaTTATATTCGCATGTACCATATCACTTCTGGGGGTGTTAATCTATCgataccacctaata--------tcatccctactatgcctagaa
i Pongo_pygmaeus.ctg22                 I 484 I 1103
s Symphalangus_syndactylus.tarseq_1289  10668120 102 -  13408629 atgcctctcatctacataaacattatactagcattcaccatctcacttctaggcatactaatttaccgctcacatctaata--------tcctccctactatgcttagaa
i Symphalangus_syndactylus.tarseq_1289 n 670 I 76

a score=0.000000
s hg38.chrM                               10571 225 +     16569 GGAATAATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTACTAC
s Hoolock_leuconedys.ctg247                1167437  10 +   1558947 gaaatatta-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------t
i Hoolock_leuconedys.ctg247              C 0 I 66
s Hylobates_abbotti.k141_472236            1083  10 +     10776 GGAATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
i Hylobates_abbotti.k141_472236       N 0 N 0
s Hylobates_agilis.k141_934238             1014  10 -     16000 GGAATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
i Hylobates_agilis.k141_934238        n 76 n 76
s Hylobates_klossii.k141_264286           11805  10 +     18225 GAAATATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
i Hylobates_klossii.k141_264286       C 0 I 66
s Hylobates_pileatus_b.LG01                  143982284  10 - 256317233 aaaatatta-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------t
i Hylobates_pileatus_b.LG01                  C 0 I 66
s Hylobates_muelleri.k141_1496007          1415  10 +     16854 GGAATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
i Hylobates_muelleri.k141_1496007     n 76 n 76
s Hylobates_pileatus_a.tarseq_843         1156642  10 -   1451355 AAAATATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
i Hylobates_pileatus_a.tarseq_843       C 0 I 66
s Nomascus_annamensis.k141_1895142        41400  10 +     81336 gaaatatta-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------t
i Nomascus_annamensis.k141_1895142    C 0 I 66
s Nomascus_concolor.k141_894066             752  10 -      8670 GAAATATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
i Nomascus_concolor.k141_894066       C 0 I 66
s Nomascus_gabriellae.k141_640476         19483  10 +     29887 GAAATATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
i Nomascus_gabriellae.k141_640476     C 0 I 66
s Nomascus_siki_b.tarseq_162        2356790  10 +   2945817 GGAATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
i Nomascus_siki_b.tarseq_162      n 76 n 76
s Nomascus_siki_a.k141_1047062               1014  10 -      2426 GGAATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
i Nomascus_siki_a.k141_1047062          n 76 n 76
s Pan_paniscus.CM003385.1             131189490  10 + 247869975 Ggaataata-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------t
i Pan_paniscus.CM003385.1             C 0 I 215
s Pan_troglodytes.CM009240.2          110735087  10 - 128755405 Ggaataata-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------t
i Pan_troglodytes.CM009240.2          C 0 I 215
s Pongo_abelii.CM009264.2                447031  10 + 129937803 Ggaataata-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------t
i Pongo_abelii.CM009264.2             C 0 I 214
s Pongo_pygmaeus.ctg419                  443666  10 -    484106 GGAATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
i Pongo_pygmaeus.ctg419               I 168 I 215
s Symphalangus_syndactylus.tarseq_341     91656  10 +    759515 ggaataata-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------t
i Symphalangus_syndactylus.tarseq_341 n 76 I 215

a score=0.000000
s hg38.chrM                               10796 278 +     16569 CACTGACATGACTTTCCAAAAAACACATAATTTGAATCAACACAACCACCCACAGCCTAATTATTAGCATCATCCCTCTACTATTTTTT-AACCAAATCAACAACAACCTATTTAGCTGTTCCCCAAC-CTTTTCCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCC
s Pan_paniscus.CM003385.1             131189715 279 + 247869975 CAATAACATGACTCTCTGATAATCCTATACTCTGGATCAATATAACCACTCACAGCCTAATTATCAGCTTTATTTCCCTATTATTCTTT-AATCAATTCAACGACAATCTATTCAACTTCTCATCAACTttTCTCCTCTGATCCCCTAACATCACCCCTTCTAATCTTAACAGCCTGGCCATTACCTCTTATAATTATAGCAAGCCAGTATCACCTCTCCAGTGAATCCCTCCCACAGAAAAAGCTCTATATTTCCATATTGATCTCCCTACAAGTTTTT
i Pan_paniscus.CM003385.1             I 215 C 0
s Pan_troglodytes.CM009240.2          110735312 279 - 128755405 CAATAACATGACTCTCTGATAATCCTATACTCTGGATCAATATAACCACTCACAGCCTAATTatcagctttattgcccTATtattCTTT-AATCAATTCAACGACAATCTATTCAACTTCTCATCAACTttTCTCCTCTGATCCCCTAACATCACCCCTTCTAATCTTAACAGCCTGGCCATTACCTCTTATAATTATAGCAAGCCAGTATCACCTCTCCAGTGAATCCCTCCCATAGAAAAAGCtctatatttccatattgatctCCCTACAAGTTTTT
i Pan_troglodytes.CM009240.2          I 215 C 0
s Pongo_abelii.CM009264.2                447255 278 + 129937803 CAATAACATGACTCTCTGAAAATCCTATACTCTGAATCCGTATAACCACTCACAGCCTAATTATCAGCTTTATTGCCCTATTATTCTTT-AATCAATTCAATGACAATCTATTCAACTTCTCATCAAC-TTTCTCCTCTGATCCCCTAACATCACCCCTTCTAATCTTAACAGCCTGGCCATTACCTCTTATAATTATAGCAAGCCAATATCACCTCTCCAGTGAATCACTCCCATGGAAAAAGCTCTATATTTCCATATTGATCTCCCTACAGGTTTTT
i Pongo_abelii.CM009264.2             I 214 I 594
s Pongo_pygmaeus.ctg419                  443891 278 -    484106 CAATAACATGATTCTCTAAAAATCCTATACTCTGAATCCGTATAACCACTCACAGCCTAATTATCAGCTTTATTGCCCTATTATTCTTT-AATCAATTCAATGACAATCTATTCAACTTCTCATCAAC-TTTCTCCTCTGATCCCCTAACATCACACCTTCTAATCTTAACAGCCTGGCCATTACCTCTTATAATTATAGCAAGCCAGTATCACCTCTCCAGTGAATCACTCCCATGGAAAAAGCTCTATATTTCCATATTGATCTCCCTACAAGTTTTT
i Pongo_pygmaeus.ctg419               I 215 C 0
s Symphalangus_syndactylus.tarseq_341     91881 272 +    759515 CAATAACATGACTCTCTAAAAATCCTATACTCAGAATTaatataaccactcacagcctaattatcagctttattgcccaattattcttt-aatcaattcaacgacaatctattcaacttctcatcaac-tttctcctctgatcccctaacaccacaccttctaatcttaacagcctggccattacctcttata------GCAAGCCAGTATCACCTCTCCAGTGAATCACTCCCATGGAAAAAGCTCTATATTTCCTTATTGGTCTCCCTACAGGTTTTT
i Symphalangus_syndactylus.tarseq_341 I 215 I 601
e Nomascus_siki_a.k141_1047062               1024  76 -      2426 I
e Nomascus_siki_b.tarseq_162        2356800  76 +   2945817 I
e Nomascus_gabriellae.k141_640476         19493  66 +     29887 I
e Nomascus_concolor.k141_894066             762  66 -      8670 I
e Nomascus_annamensis.k141_1895142        41410  66 +     81336 I
e Hylobates_pileatus_a.tarseq_843         1156652  66 -   1451355 I
e Hylobates_muelleri.k141_1496007          1425  76 +     16854 I
e Hylobates_pileatus_b.LG01                  143982294  66 - 256317233 I
e Hylobates_klossii.k141_264286           11815  66 +     18225 I
e Hylobates_agilis.k141_934238             1024  76 -     16000 I
e Hoolock_leuconedys.ctg247                1167447  66 +   1558947 I

a score=0.000000
s hg38.chrM                               11074 607 +     16569  
s Hoolock_leuconedys.ctg201                2352534   9 +   2949979  
i Hoolock_leuconedys.ctg201              I 1732 n 66
s Nomascus_annamensis.k141_685912          6046   9 -     16598  
i Nomascus_annamensis.k141_685912     I 1200 n 66
s Nomascus_concolor.k141_556697            3388   9 +     16611  
i Nomascus_concolor.k141_556697       I 1200 n 66
s Nomascus_gabriellae.k141_4436           24492   9 -     30492  
i Nomascus_gabriellae.k141_4436       I 1200 n 66
s Pan_paniscus.CM003385.1             131189994 608 + 247869975  
i Pan_paniscus.CM003385.1             C 0 C 0
s Pan_troglodytes.CM009240.2          110735591 608 - 128755405  
i Pan_troglodytes.CM009240.2          C 0 C 0
s Pongo_abelii.CM009283.2                460204 596 +  34683425  
i Pongo_abelii.CM009283.2             I 671 I 666
s Pongo_pygmaeus.ctg419                  444169 596 -    484106  
i Pongo_pygmaeus.ctg419               C 0 C 0
s Symphalangus_syndactylus.tarseq_719     47706 593 -     94135  
i Symphalangus_syndactylus.tarseq_719 I 670 I 727
e Nomascus_siki_a.k141_1047062               1024  76 -      2426 I
e Nomascus_siki_b.tarseq_162        2356800  76 +   2945817 I
e Hylobates_pileatus_a.tarseq_843         1156652  66 -   1451355 I
e Hylobates_muelleri.k141_1496007          1425  76 +     16854 I
e Hylobates_pileatus_b.LG01                  143982294  66 - 256317233 I
e Hylobates_klossii.k141_264286           11815  66 +     18225 I
e Hylobates_agilis.k141_934238             1024  76 -     16000 I

a score=0.000000
s hg38.chrM                                11681 8 +     16569 GCTTCACC
s Hoolock_leuconedys.ctg247                 1167513 8 +   1558947 gcattacc
i Hoolock_leuconedys.ctg247               I 66 N 0
s Hylobates_abbotti.k141_1116496             983 8 -      7393 GCATTACC
i Hylobates_abbotti.k141_1116496       N 0 N 0
s Hylobates_agilis.k141_536749              4520 8 +     10928 GCATTACC
i Hylobates_agilis.k141_536749         I 76 N 0
s Hylobates_klossii.k141_264286            11881 8 +     18225 GCATTACC
i Hylobates_klossii.k141_264286        I 66 N 0
s Hylobates_pileatus_b.LG01                   143982360 8 - 256317233 gcattacc
i Hylobates_pileatus_b.LG01                   I 66 N 0
s Hylobates_muelleri.k141_747051           11849 8 +     16344 gcattacc
i Hylobates_muelleri.k141_747051       I 76 N 0
s Hylobates_pileatus_a.tarseq_843          1156718 8 -   1451355 GCATTACC
i Hylobates_pileatus_a.tarseq_843        I 66 N 0
s Nomascus_annamensis.k141_1895142         41476 8 +     81336 gcattacc
i Nomascus_annamensis.k141_1895142     I 66 N 0
s Nomascus_concolor.k141_894066              828 8 -      8670 GCATTACC
i Nomascus_concolor.k141_894066        I 66 N 0
s Nomascus_gabriellae.k141_640476          19559 8 +     29887 GCATTACC
i Nomascus_gabriellae.k141_640476      I 66 N 0
s Nomascus_siki_b.tarseq_193         1234573 8 +   1505665 GCATTACC
i Nomascus_siki_b.tarseq_193       I 76 N 0
s Nomascus_siki_a.k141_859023                 9427 8 +     17467 GCATTACC
i Nomascus_siki_a.k141_859023            I 76 N 0
s Pan_paniscus.CM003385.1              131190602 8 + 247869975 GCTTTACC
i Pan_paniscus.CM003385.1              C 0 C 0
s Pan_troglodytes.CM009240.2           110736199 8 - 128755405 gctttacc
i Pan_troglodytes.CM009240.2           C 0 C 0
s Pongo_abelii.CM009264.2                 448127 8 + 129937803 GCTTTACC
i Pongo_abelii.CM009264.2              I 594 C 0
s Pongo_pygmaeus.ctg419                   444765 8 -    484106 GCTTTACC
i Pongo_pygmaeus.ctg419                C 0 I 364
s Symphalangus_syndactylus.tarseq_1289  10668298 8 -  13408629 ctatcgtc
i Symphalangus_syndactylus.tarseq_1289 I 76 n 727

a score=0.000000
s hg38.chrM                               11689 290 +     16569 GGCGCAGTCATTCTCATAATCGCCCACGGGCTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACT-------------ACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTC
s Gorilla_beringei.k141_1529327           15898 146 +     19115 -----------------------------------------------------------------------------------------------------------------------------------------------------------GATGACTTATAGCAAACCTTACTAACCTTGCCTTACCCcCCACTACTAATCTAATAGGAGAACTCTTTGTAATGGTGGCTTCATTCTCCTGATCAAACATCATCATTATGCTTATAGGAC-TTA-ATATTAATCACAGCCCTTTATTC
i Gorilla_beringei.k141_1529327       N 0 I 25
s Pan_paniscus.CM003385.1             131190610 290 + 247869975 GGTTTAATTATCCTCGTAATTGCCCACGGACTTACTTCGTCCCTACTTTTCTGCCTAGCAAATTCAAACT-------------ACAAGCGAATCCACAGCCGAATCATATTACTCTCTCGAGGGCTtcaaacaTTATTTCCACTaatagccttttgatggcttatagcaaatcttactaaccctgccttacccccctccactaatctaataggagaactcctcgtaatagtggcttctttctcctgatcaaatattaccattatgcttataggatgtaatatattaatcactgccctttatTT
i Pan_paniscus.CM003385.1             C 0 C 0
s Pan_troglodytes.CM009240.2          110736207 290 - 128755405 GGTTTaattatcctcgtaattgcccacggacttacttcgtccctacttttctgcctagcaaattcaaact-------------acaagcgaatccacagccgaatcatattactctctcgagggcttcaaacattatttccactaatagccttttgatggcttatagcaaatcttagtaaccctgccttacccccctccactaatctaataggaaaactcctcgtaatagtggcttctttctcctgatcaaatattaccattatgcttataggatgcaatatattaatcactgccctttattT
i Pan_troglodytes.CM009240.2          C 0 C 0
s Pongo_abelii.CM009264.2                448135 302 + 129937803 A-TGCAATTATCCTCATAATTGCCCACGGACTTACTTCGTCCTTACTTTTCTGCTTAGCAAATTCAAACTTAGCAAATTCAAAATGAGCGAATCCACAGCTGAATCATATTACTCTCTTGAGGGCTTCAAACATTATTTCCACTAATAGCCTTTTGATGGCTTATAGCAAATCTTACTAACCCTGCCTTACCCCCCTCCCTTAATCTAATAGGAGAACTCCTCGTAATAGTGgcttcactctcctgatcaaatattaccattatGCTTATAGGACGTAATATATTAATTACagccctttattt
i Pongo_abelii.CM009264.2             C 0 C 0
s Pongo_pygmaeus.ctg22                    44493 302 +  44630897 A-TgcaattatcctcataattgcccacggacttacttcgtccttacttttctgcttagcaaattcaaacTTAGCAAATTCAAAATGAGCGAATCCACAGCTGAATCATATTACTCTCTTGAGGGcttcaaacattatttccactaatagccttttgatggcttatagcaaatcttactagccctgccttacccccctcccttaatctaataggagaactcctcgtaatagtggcttcactctcctgatcaaatattaccattatgcttataggacgtaatatattaattacagccctttattt
i Pongo_pygmaeus.ctg22                I 1103 C 0
s Symphalangus_syndactylus.tarseq_341     92754 286 +    759515 g-tgcaatTATCCTCATAATTGCCCACGGACTTACTtcgtcc---cttttCTGCCTAGCAAATTCAAACT-------------ACAAGCGAATCCACAGACGAATCATATTACTCTCTCGAGGGCTTCAAACATTATTTCCACTAATAGCCTTTTGATGGCTTATAGCAAATCTTACTAACCTTGccttacccccctccACTAATCTAATAGGAGAACTCCTCGTAATAGTGGCTTCATTCTCCTGATCAAATATTACCATTATGCTTATAGGACATAATATATTAATTACAGCCCTTTATTT
i Symphalangus_syndactylus.tarseq_341 I 601 I 150

a score=0.000000
s hg38.chrM                                    11979 75 +     16569 CCTCTACATATTTAC--CACAACACAATGGG-----GC-TCACTC---ACCC-----ACCA-----C-----AT---------TA-----A-CAACATAAAA---C--------------C-CT---CAT-TCAC-ACG
s Allenopithecus_nigroviridis.k141_787855      23018 75 -     46693 CCTGTATATGCTAAT--CTCAACATAACGAG-----AG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Allenopithecus_nigroviridis.k141_787855  N 0 I 301
s Allochrocebus_lhoesti.k141_1513956            7565 75 +     44761 CCTGTATATGCTAAT--CTCAACACAACGAG-----AG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Allochrocebus_lhoesti.k141_1513956       N 0 I 30
s Allochrocebus_preussi.k141_3466725            7582 75 +     53249 cctgtatatgctaat--ctcaacacaatgag-----ag-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Allochrocebus_preussi.k141_3466725       N 0 I 30
s Allochrocebus_solatus.k141_1967293           10720 70 +     22295 CCTATGTATGCTAAT--CATGATACAATGAG-----GG-ACACTT---GC----------A-----T-----AT---------TA-----A-CAATATTAAA---C--------------C-TT---CCT-TTAC-ACA
i Allochrocebus_solatus.k141_1967293       N 0 I 59
s Cercocebus_atys.KQ010939.1                29209443 75 +  29793205 CCTGTATATGCTAAT--CTCAACACAATGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Cercocebus_atys.KQ010939.1               N 0 I 30
s Cercocebus_chrysogaster.k141_129667          30274 75 -     34785 cctgtatatgctaat--ctcaacacaacgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Cercocebus_chrysogaster.k141_129667      N 0 I 30
s Cercocebus_lunulatus.k141_1448852             6689 75 -     50786 cctgtatatgctaat--ctcaacacaacgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Cercocebus_lunulatus.k141_1448852        N 0 I 30
s Cercocebus_torquatus.k141_301629              6774 75 -     11288 cctgtatatgctaat--ctcaacacaacgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-tTAC-ATG
i Cercocebus_torquatus.k141_301629         N 0 I 37
s Cercopithecus_ascanius.k141_1474622           9523 70 -     20001 cctatgtatgctaat--catgatacaatgag-----gg-acactt---gc----------a-----t-----at---------ta-----A-CAATATTAAA---C--------------C-TT---CCT-TTAC-ACA
i Cercopithecus_ascanius.k141_1474622      N 0 I 59
s Cercopithecus_cephus.k141_2404415            10095 70 +     17637 CCTATGTATGCTAAT--CATGATACAATGAG-----GG-ACACTT---GC----------A-----T-----AT---------TA-----A-CAATATTAAA---C--------------C-TT---CCT-TTAC-ACA
i Cercopithecus_cephus.k141_2404415        N 0 I 59
s Cercopithecus_diana.k141_2649081              6773 75 -     35932 CCTGTATATGCTAAT--CTCAACACAACGAG-----AG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Cercopithecus_diana.k141_2649081         N 0 I 30
s Cercopithecus_hamlyni.k141_1438427            4567 75 -     46742 cctgtatatgctaat--ctcaacacaatgag-----ag-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Cercopithecus_hamlyni.k141_1438427       N 0 I 30
s Cercopithecus_lowei.k141_1304160              1989 75 -      4275 cctgtatatgctaat--CTCAACACAATAAG-----AG-ACACTT---Tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-TT---CCT-TTAC-ATG
i Cercopithecus_lowei.k141_1304160         N 0 I 30
s Cercopithecus_albogularis.ctg28                 11340013 70 +  15093345 CCTATGTATGCTAAT--CATGATACAATGAG-----GG-ACACTT---GC----------a-----t-----at---------ta-----A-CAATATTAAA---C--------------C-TT---CCT-TTAC-ACA
i Cercopithecus_albogularis.ctg28                N 0 I 59
s Cercopithecus_mona.ctg42                  15303057 75 +  20621893 CCTGTATATGCTAAT--CTCAACACAATAAG-----AG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Cercopithecus_mona.ctg42                 N 0 I 30
s Cercopithecus_neglectus.k141_2633140          9674 75 -     57664 cctgtatatgctaat--ctcaacacaacgag-----ag-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Cercopithecus_neglectus.k141_2633140     N 0 I 367
s Cercopithecus_nictitans.k141_3162920          9131 70 +     18223 CCTATGTATGCTAAT--CATGATACAATGAG-----GG-ACACTT---GC----------A-----T-----AT---------TA-----A-CAATATTAAA---C--------------C-TT---CCT-TTAC-ACA
i Cercopithecus_nictitans.k141_3162920     N 0 I 59
s Cercopithecus_petaurista.k141_1586297        10146 70 +     12913 cctatgtatgctaat--catgatacaatgag-----gg-acactt---gc----------a-----t-----at---------ta-----A-CAATATTAAA---C--------------C-TT---CCT-TTAC-ACA
i Cercopithecus_petaurista.k141_1586297    N 0 I 59
s Cercopithecus_pogonias.k141_2349534          12044 75 +     31427 CCTGTATATGCTAAT--CTCAACACAACGAG-----AG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Cercopithecus_pogonias.k141_2349534      N 0 I 30
s Cercopithecus_roloway.k141_2783013           27572 75 -     43083 CCtgtatatgctaat--ctcaacacaacgag-----ag-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Cercopithecus_roloway.k141_2783013       N 0 I 30
s Chlorocebus_aethiops.ctg56                12888799 75 +  17892486 CCTGTATATGCTAAT--CTCAACACAACGAG-----AG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Chlorocebus_aethiops.ctg56               N 0 I 30
s Chlorocebus_pygerythrus.k141_745568           7326 75 -     98243 CCTGTATATGCTAAT--CTCAACACAACGAG-----AG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAaa---c--------------c-tt---cct-tTAC-ATG
i Chlorocebus_pygerythrus.k141_745568      N 0 I 301
s Chlorocebus_sabaeus.CM001947.1            33757710 75 - 135778131 cctgtatatgctaat--ctcaacacaacgag-----aa-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Chlorocebus_sabaeus.CM001947.1           N 0 I 301
s Colobus_angolensis.KN983729.1             32406887 75 +  35326507 CCTGTATATGCTAAT--CGCAACACAACGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Colobus_angolensis.KN983729.1            N 0 I 441
s Colobus_guereza.LG01                      35865973 75 - 200372422 CCTGTATATGCTAAT--CGCAACACAACGAG-----GG-ACACTT---TCAT-----ATta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Colobus_guereza.LG01                     N 0 N 0
s Colobus_polykomos.k141_1498685                3044 75 -      4776 CCTGTATATGCTAAT--CGCAACACAACGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Colobus_polykomos.k141_1498685           N 0 I 78
s Erythrocebus_patas.Contig40               15741610 75 +  21278523 CCTGTATATGCTAAT--CTCAACACAACGAG-----AG-ACATTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Erythrocebus_patas.Contig40              N 0 I 30
s Gorilla_beringei.k141_1529327                16069 47 +     19115 ------------------------------G-----GA-ACACTT---ACAT-----ATTA-----C-----AT---------TA-----A-CAGTATTAAA---C--------------C-TT---CCT-CCAC-ACA
i Gorilla_beringei.k141_1529327            I 25 C 0
s Lophocebus_aterrimus.ctg47                 6875822 75 -  17053299 CCTGTATATGCTAAT--CTCAACACAATGAG-----GG-ACACTT---Tcat-----atta-----t-----at---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Lophocebus_aterrimus.ctg47               N 0 I 301
s Macaca_arctoides.k141_1404761                13112 75 -     30054 CCTGTATATGCTAAT--CTCAACACAACGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Macaca_arctoides.k141_1404761            N 0 N 0
s Macaca_assamensis.Contig5                 34321523 75 -  60120075 cctgtatatgctaat--ctcaacacaacgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Macaca_assamensis.Contig5                N 0 I 30
s Macaca_cyclopis.k119_512377                   5055 75 +     21625 CCTGTATATGCTAAT--CTCAACACAACGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Macaca_cyclopis.k119_512377              N 0 I 30
s Macaca_fascicularis.k141_747886              23646 75 +     40098 cctgtatatgctaat--ctcaacacaacgag-----ga-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Macaca_fascicularis.k141_747886          N 0 I 30
s Macaca_fuscata.k119_609323                    9489 75 -     25971 cctgtatatgctaat--ttcaacacaacgag-----ga-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Macaca_fuscata.k119_609323               N 0 I 162
s Macaca_leonina.k141_3096853                  28020 75 +     75049 cctgtacatacttat--cacaatacaacaag-----ga-acactt---acac-----gtta-----c-----at---------ta-----a-tagcattaaa---c--------------c-tt---cct-ctat-acg
i Macaca_leonina.k141_3096853              N 0 I 651
s Macaca_maura.k141_1914888                     9331 75 -     25759 cctgtatatgctaat--CTCAACACAACAAG-----GG-ACACTT---TCAT-----ATTA-----T-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Macaca_maura.k141_1914888                N 0 I 301
s Macaca_mulatta.NC_041758.1                34258821 75 - 187317192 CCTGTATATGCTAAT--CTCAACACAACGAG-----GA-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Macaca_mulatta.NC_041758.1               N 0 I 30
s Macaca_nemestrina.KQ005114.1               9179930 75 -   9503891 CCTGTATATGCTAAT--CTCAACACAACAAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Macaca_nemestrina.KQ005114.1             N 0 I 30
s Macaca_nigra.k141_1991806                     5055 75 +     21490 CCTGTATATGCTAAT--CTCAACACAACAAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Macaca_nigra.k141_1991806                N 0 I 78
s Macaca_radiata.k141_501718                    1815 75 +     18260 cctgtatatgctaat--ctcaacacaacgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Macaca_radiata.k141_501718               N 0 I 30
s Macaca_siberu.k141_648104                     4747 75 +     12376 CCTGTACATACTTAT--CACAATACAACAAG-----GA-ACACTT---ACAC-----GTTA-----C-----AT---------TA-----A-TAGCATTAAA---C--------------C-TT---CCT-CTAT-ACG
i Macaca_siberu.k141_648104                N 0 I 651
s Macaca_silenus.Contig704                     55485 75 +    102884 cctgtacatacttat--cacaatacaacaag-----ga-acactt---acac-----gtta-----c-----at---------ta-----a-tagcattaaa---c--------------c-tt---cct-ctat-atg
i Macaca_silenus.Contig704                 N 0 N 0
s Macaca_thibetana.k99_645926                   6190 75 +     22580 cctgtatatgctaat--CTCAACACAACGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Macaca_thibetana.k99_645926              N 0 I 301
s Macaca_tonkeana.k141_2069709                 15983 75 +     32421 cctgtatatgctaat--ctcaacacaacaag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Macaca_tonkeana.k141_2069709             N 0 I 367
s Mandrillus_leucophaeus.scaffold284         9282837 75 -  27319382 cctgtatatgctaat--ctcaacacactgag-----gg-acactc---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-TT---CCT-TTAC-ATG
i Mandrillus_leucophaeus.scaffold284       N 0 I 37
s Mandrillus_sphinx.Contig7                 14440411 75 +  51421834 CCTGTATATGCTAAT--CTCAACACAATGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Mandrillus_sphinx.Contig7                N 0 I 30
s Miopithecus_ogouensis.k141_2701950            3603 75 +     10686 CTTCAGTATGTCGAC--CGCAACACAATGAG-----GG-AGACTT---ACAT-----ATTA-----T-----AT---------TA-----A-CAGTATTAAA---C--------------C-TT---CCT-TTAC-ATG
i Miopithecus_ogouensis.k141_2701950       N 0 I 30
s Nasalis_larvatus.k141_291395                  5209 75 -      7393 CCTGTATATGCTAAT--CACAACACAACGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Nasalis_larvatus.k141_291395             N 0 N 0
s Pan_paniscus.CM003385.1                  131190900 75 + 247869975 CCATCACATACTTGT--CACAACACAATGAT-----GA-ACACTT---ACTT-----GTTA-----T-----AT---------TA-----A-CAGTATTAAG---C--------------C-CT---CCT-TTac-atg
i Pan_paniscus.CM003385.1                  C 0 C 0
s Pan_troglodytes.CM009240.2               110736497 75 - 128755405 CCATCACAtacttgt--cacaacacaatgat-----ga-aCACTT---ACTT-----GTTA-----T-----AT---------TA-----A-CAGTATTAAG---C--------------C-CT---CCT-TTAc-atg
i Pan_troglodytes.CM009240.2               C 0 C 0
s Papio_anubis.CM001495.2                   34019773 82 - 183742232 CCTGTATATGCTAAT--CTCAACACAATGAG-----GG-ACACTTATCCAAT-----ATTA-----T-----AT---------TA-----AACAGTATGAAA---C--------------C-TATAACCT-ATAC-ATG
i Papio_anubis.CM001495.2                  N 0 I 31
s Papio_cynocephalus.k141_1747982               1226 75 +     16929 cctgtatatgctaat--ctcaacacaatgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Papio_cynocephalus.k141_1747982          N 0 I 444
s Papio_hamadryas.Contig36                  14843060 75 +  22161365 cctgtatatgctaat--CTCAACACAATGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Papio_hamadryas.Contig36                 N 0 I 30
s Papio_kindae.k141_2318205                    17258 75 -     48934 cctgtatatgctaat--ctcaacacaatgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Papio_kindae.k141_2318205                N 0 I 30
s Papio_papio.k141_2436119                     34322 75 -     56783 cctgtatatgctaat--ctcaacacaatgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Papio_papio.k141_2436119                 N 0 I 78
s Papio_ursinus.k141_2685680                   11591 75 +     15956 cctgtatatgctaat--ctcaacacaatgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Papio_ursinus.k141_2685680               N 0 I 30
s Piliocolobus_badius.k141_1674576              2682 75 -      4572 CCTGCATATGCTAAT--CGCAACACAACGAG-----GC-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Piliocolobus_badius.k141_1674576         N 0 I 365
s Piliocolobus_gordonorum.k141_1373682         11471 75 -     31464 CCTACACATGCTTAT--CacaACACAACGAG-----GA-ACATTT---AC----------A-----TATTACAT---------TA-----A-CAGTATTAAA---C--------------C-TT---CCT-TTAC-ATG
i Piliocolobus_gordonorum.k141_1373682     N 0 N 0
s Piliocolobus_kirkii.k141_304712               3042 75 -     65669 CCTGTATATGCTAAT--CGCAACACAACGAG-----GC-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Piliocolobus_kirkii.k141_304712          N 0 I 160
s Piliocolobus_tephrosceles.PDMG02000295.1   1477410 75 -   9045217 cctacacatgcttat--cacaacacaacgag-----ga-acattt---ac----------a-----tattaCAT---------TA-----A-CAGTATTAAA---C--------------C-TT---CCt-ttac-atg
i Piliocolobus_tephrosceles.PDMG02000295.1 N 0 N 0
s Pongo_abelii.CM009264.2                     448437 75 + 129937803 ccttcacaTGCTTGT--CACAACACAACGAC-----GA-ACACTT---ACTT-----ATTA-----T-----AT---------TA-----A-CAGTATTAAG---C--------------C-CT---CCT-TTAT-ATG
i Pongo_abelii.CM009264.2                  C 0 C 0
s Pongo_pygmaeus.ctg22                         44795 75 +  44630897 ccttcacatgcttgt--cacaacacaacgat-----ga-acactt---actt-----atta-----t-----at---------ta-----a-cagtattaag---c--------------c-ct---cct-ttac-atg
i Pongo_pygmaeus.ctg22                     C 0 I 185
s Presbytis_comata.k141_1013241                17787 75 +     21385 cctacacatgcttat--cacaacacaacaag-----ga-acactt---acat-----atta-----c-----at---------ta-----a-cagtattaaa---c--------------c-TT---CCT-TTAC-ATG
i Presbytis_comata.k141_1013241            N 0 I 548
s Presbytis_mitrata.k141_2005050               11981 75 +     23059 CCTACACATGCTTAT--CACAACACAACAAG-----GA-ACACTT---ACAT-----ATTA-----C-----AT---------TA-----A-CAGTATTAAA---C--------------C-TT---CCT-TTAC-ATG
i Presbytis_mitrata.k141_2005050           N 0 I 484
s Pygathrix_cinerea.k141_1473548               19791 75 +     26068 cctaaatatgctaatcaca--acacaacgag-----gg-acactt---gcat-----atta-----c-----at---------ta-----a-cagtattaaa---c--------------c-tt---cct-ttac-acg
i Pygathrix_cinerea.k141_1473548           N 0 I 70
s Pygathrix_nigripes_b.ctg5                    24983897 75 -  59994118 tctgtatatgctaat--cacaacacaacgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---t--------------c-tt---cct-ttac-atg
i Pygathrix_nigripes_b.ctg5                   N 0 I 78
s Pygathrix_nigripes_a.k141_765299                5171 75 -      7067 tctgtatatgctaat--cacaacacaacGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTatgaaa---t--------------c-tt---cct-ttac-atg
i Pygathrix_nigripes_a.k141_765299           N 0 N 0
s Rhinopithecus_bieti.k119_1149192             20359 72 -     22148 CCTGTATATGCTAAT--Tacaacac---gag-----gg-ACACTT---TCAT-----ATTa-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Rhinopithecus_bieti.k119_1149192         N 0 I 367
s Rhinopithecus_roxellana.NC_044550.1      134183023 72 - 195417433 CCTGTATATGCTAAT--Tacaacac---gaG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Rhinopithecus_roxellana.NC_044550.1      N 0 I 78
s Rhinopithecus_strykeri.ctg6               26886143 72 -  45074249 CCTGTATATGCTAAT--Tacaacac---gaG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Rhinopithecus_strykeri.ctg6              N 0 I 293
s Semnopithecus_entellus.k141_463041           10199 75 -     42431 CCTACATATGCTAAT--CACAACACAACTAG-----GG-ACACTT---AC----------A-----T-----AT---------TATATTTA-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Semnopithecus_entellus.k141_463041       N 0 I 29
s Semnopithecus_hypoleucos.k141_2314638          612 75 -      3947 CCTACATATGCTAAT--CACAACACAACTAG-----GG-ACACTT---AC----------A-----T-----AT---------TATATTTA-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Semnopithecus_hypoleucos.k141_2314638    N 0 I 29
s Semnopithecus_johnii.k141_1161280              551 75 -     11504 CCTACATatgctaat--cacaacacaactag-----gg-acactt---ac----------a-----t-----at---------tatattta-cagtatgaaa---c--------------c-TT---CCT-TTAC-ATG
i Semnopithecus_johnii.k141_1161280        N 0 I 29
s Semnopithecus_priam.k141_842164                679 75 -      4001 cctacatatgctaat--cacaacacaactag-----gg-acactt---ac----------a-----t-----at---------tatatTTA-CAGTATGAAA---C--------------C-TT---CCT-TTAc-atg
i Semnopithecus_priam.k141_842164          N 0 I 29
s Semnopithecus_schistaceus.k141_1231873         735 75 +      4128 cctacatatgctaat--cacaacacaactag-----gg-acactt---ac----------a-----t-----at---------tatattta-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Semnopithecus_schistaceus.k141_1231873   N 0 I 29
s Semnopithecus_vetulus.k141_1248868             698 75 +     26236 CCTACATATGCTAAT--CACAACACAACTAG-----GG-ACACTT---AC----------A-----T-----AT---------tatattta-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Semnopithecus_vetulus.k141_1248868       N 0 I 29
s Symphalangus_syndactylus.tarseq_159        7806737 74 -   7865082 CCTTCACATGCTTGT--CACAACACAACGAC-----GA-ACACTT---ACTT-----ATTA-----T-----AT----------A-----A-CAGTATTAAG---C--------------C-CT---CCT-TTAC-ATG
i Symphalangus_syndactylus.tarseq_159      n 150 C 0
s Theropithecus_gelada.CM009954.1           34437275 75 - 186847797 CCTGTATATGCTAAT--CTCAACACAATGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Theropithecus_gelada.CM009954.1          N 0 I 30
s Trachypithecus_auratus.k141_1075286           4078 75 -      5743 cctgtatatgctaat--cacaacacaatgag-----gg-acactt---tctt-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Trachypithecus_auratus.k141_1075286      N 0 I 78
s Trachypithecus_crepusculus.k141_1014169       4100 75 +      5849 cctgtatatgctaat--cacaacacaatgag-----gg-acactt---tctt-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---ctt-ttac-atg
i Trachypithecus_crepusculus.k141_1014169  N 0 I 301
s Trachypithecus_cristatus.k141_815529          4117 75 -      5857 cctgtatatgctaat--cacaacacaatgag-----gg-acactt---tctt-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Trachypithecus_cristatus.k141_815529     N 0 I 78
s Trachypithecus_francoisi.k141_1371045         4117 75 -      6347 cctgtatatgctaat--cacaacacaatgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Trachypithecus_francoisi.k141_1371045    N 0 I 301
s Trachypithecus_geei.k141_1746325              4828 75 +     37094 CCTACACATGCTTAT--CACAACACAACAAG-----GA-ACACTT---ACAT-----ATTA-----C-----AT---------TA-----A-CAGTATTAAA---C--------------C-TT---CCT-TTAC-ATG
i Trachypithecus_geei.k141_1746325         N 0 N 0
s Trachypithecus_germaini.k141_74334            3964 75 -      5905 cctgtatatgctaat--cacaacacaatgag-----gg-acactt---tctt-----acta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Trachypithecus_germaini.k141_74334       N 0 I 301
s Trachypithecus_hatinhensis.k141_37173         3963 75 -      5703 cctgtatatgctaat--cacaacacaatgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Trachypithecus_hatinhensis.k141_37173    N 0 I 78
s Trachypithecus_laotum.k141_72364              3964 75 -      5710 cctgtatatgctaat--cacaacacaatgag-----gg-acactt---tcat-----atta-----t-----at---------ta-----a-cagtatgaaa---c--------------c-tt---cct-ttac-atg
i Trachypithecus_laotum.k141_72364         N 0 I 301
s Trachypithecus_leucocephalus.k141_359357      5219 73 +     15007 tctaaatatgctaat--ca--acacaccaag-----gg-acactt---gcat-----atTA-----T-----AT---------TA-----A-CAGTATTAAA---C--------------A-TT---CCT-TTAC-ACT
i Trachypithecus_leucocephalus.k141_359357 N 0 I 70
s Trachypithecus_melamera.k141_524806           4208 75 +      5657 CCTGTATATGCTAAT--CACAACACAATGAG-----GG-ACACTT---TCAT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Trachypithecus_melamera.k141_524806      N 0 I 78
s Trachypithecus_obscurus.k141_114580           4118 75 +      5872 CCTGTATATGCTAAT--CACAACACAATGAG-----GG-ACACTT---TCtt-----atta-----t-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CCT-TTAC-ATG
i Trachypithecus_obscurus.k141_114580      N 0 I 78
s Trachypithecus_phayrei.ctg1               24764613 75 -  59489887 CCTGTATATGCTAAT--CACAACACAATGAG-----GG-ACACTT---TCTT-----ATTA-----T-----AT---------TA-----A-CAGTATGAAA---C--------------C-TT---CTT-TTAC-ATG
i Trachypithecus_phayrei.ctg1              N 0 I 78
s Trachypithecus_pileatus.k141_1206167          5092 75 +     13591 cctacacatgcttat--cacaacacaacaag-----ga-acactt---acat-----atta-----c-----at---------ta-----a-cagtattaaa---c--------------c-tt---cct-ttac-atg
i Trachypithecus_pileatus.k141_1206167     N 0 N 0

a score=0.000000
s hg38.chrM                                    12054 30 +     16569 AG-AAAAC---AC-CC-------T-CA----T-----GTTCATA----C-----------AC------------CTATC
s Allenopithecus_nigroviridis.k141_4304654      7372 30 +     24829 GG-AAAAT---AC-AC-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Allenopithecus_nigroviridis.k141_4304654 n 301 I 7
s Allochrocebus_lhoesti.k141_2687901            6355 30 +     13200 AG-AAAAT---AC-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTCTC
i Allochrocebus_lhoesti.k141_2687901       n 30 n 30
s Allochrocebus_preussi.k141_1036589            6577 30 -     14749 AG-AAAAT---AC-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTCTC
i Allochrocebus_preussi.k141_1036589       n 30 I 7
s Allochrocebus_solatus.k141_1664502            6336 30 +     14510 AG-AAAAT---AC-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTCTC
i Allochrocebus_solatus.k141_1664502       n 59 I 7
s Cercocebus_atys.KQ012491.1                   40154 37 -     65906 ag-CACAT---AC-TT-------T-CT----A-----TTGTATA----C-----------acta---g-c-cagctctc
i Cercocebus_atys.KQ012491.1               n 30 n 30
s Cercocebus_chrysogaster.k141_2454662           772 37 -      2006 ag-cacat---ac-tt-------t-ct----a-----ttttaca----c-----------acta---g-ct-ggctctc
i Cercocebus_chrysogaster.k141_2454662     n 30 n 30
s Cercocebus_lunulatus.k141_5051340             1776 29 +     26539 AG-AAAAT---AC-AT-------T-AA----T-----ACTTATA----C-----------at------------cttg-
i Cercocebus_lunulatus.k141_5051340        n 30 I 30
s Cercocebus_torquatus.k141_89773               1216 37 -      2420 ag-cacat---ac-tt-------t-ct----a-----ttttaca----c-----------tctaaccgg-----ctctc
i Cercocebus_torquatus.k141_89773          n 37 n 37
s Cercopithecus_ascanius.k141_1200845           3042 30 -      3077 GG-AAAAT---AC-AC-------T-TA----T-----ATTTATA----C-----------AC------------CTTTC
i Cercopithecus_ascanius.k141_1200845      n 59 C 0
s Cercopithecus_cephus.k141_1222642             3001 30 -     26169 GG-AAAAT---AC-AC-------T-TA----T-----ATTTATA----C-----------AC------------CTTTC
i Cercopithecus_cephus.k141_1222642        n 59 C 0
s Cercopithecus_diana.k141_1557666             29872 30 +     50511 ag-aaaat---ac-at-------t-aa----t-----atttata----c-----------ac------------tttgc
i Cercopithecus_diana.k141_1557666         n 30 I 40
s Cercopithecus_hamlyni.k141_163049            10248 30 +     13474 ag-aaaat---ac-at-------g-aa----t-----atttata----c-----------at------------cttgc
i Cercopithecus_hamlyni.k141_163049        n 30 I 40
s Cercopithecus_lowei.k141_1815585              3130 30 +      4563 GG-AAAAT---AC-AC-------T-TA----T-----ATTTATA----C-----------AC------------CTTTC
i Cercopithecus_lowei.k141_1815585         n 30 I 7
s Cercopithecus_albogularis.ctg283                 1202217 30 -   1273525 GG-AAAAT---AC-AC-------T-TA----T-----ATTTATA----C-----------AC------------CTTTC
i Cercopithecus_albogularis.ctg283               n 59 C 0
s Cercopithecus_mona.ctg49                  18626784 30 +  18760735 GG-AAAAT---AC-AC-------T-TA----T-----ATTTATA----C-----------AC------------CTTTC
i Cercopithecus_mona.ctg49                 n 30 I 7
s Cercopithecus_neglectus.k141_790885           1837 30 -      7576 GG-AAAAT---AC-AC-------T-TA----T-----ATTTATA----C-----------AC------------CTTTC
i Cercopithecus_neglectus.k141_790885      n 367 C 0
s Cercopithecus_nictitans.k141_2579170           924 30 -     21268 GG-AAAAT---AC-AC-------G-TA----T-----ATTTATA----C-----------AC------------CTTTC
i Cercopithecus_nictitans.k141_2579170     n 59 C 0
s Cercopithecus_petaurista.k141_2710281         5962 30 +     15186 GG-AAAAT---AC-AC-------T-TA----T-----ATTTATA----C-----------AC------------CTTTC
i Cercopithecus_petaurista.k141_2710281    n 59 C 0
s Cercopithecus_pogonias.k141_953790            8966 30 +     12831 AG-AAAAT---AC-AT-------G-AA----T-----ATTTATA----C-----------AT------------CTTGC
i Cercopithecus_pogonias.k141_953790       n 30 I 465
s Cercopithecus_roloway.k141_2348395           13878 30 -     24522 ag-aaaat---ac-at-------t-aa----t-----atttata----c-----------ac------------tttgc
i Cercopithecus_roloway.k141_2348395       n 30 I 40
s Chlorocebus_aethiops.ctg532                 224934 31 -    463733 agaaaaAT---AC-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTCTC
i Chlorocebus_aethiops.ctg532              n 30 I 7
s Chlorocebus_pygerythrus.k141_1433182          7302 30 -     17062 AG-AAAAT---AC-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTCTC
i Chlorocebus_pygerythrus.k141_1433182     n 301 I 7
s Chlorocebus_sabaeus.CM001951.2            76580584 30 - 130038232 ag-aaaat---ac-at-------t-aa----t-----atttata----c-----------aC------------CTCTC
i Chlorocebus_sabaeus.CM001951.2           n 301 I 803
s Colobus_angolensis.KN980972.1              2050840 30 +   4172716 ag-aaaat---at-at-------t-aa----t-----atttata----c-----------ac------------CTCTC
i Colobus_angolensis.KN980972.1            n 441 C 0
s Colobus_guereza.LG09                     103628271 30 - 145964134 ag-aaaat---at-at-------t-aa----t-----atttata----c-----------ac------------ctctc
i Colobus_guereza.LG09                     N 0 N 0
s Colobus_polykomos.k141_1906676               22244 30 -     51721 ag-aaaac---ac-at-------t-aa----t-----acttata----c-----------ac------------ctttc
i Colobus_polykomos.k141_1906676           n 78 n 78
s Erythrocebus_patas.Contig3274                 6587 30 -     15413 gg-aaaat---ac-ac-------t-ta----t-----atttata----c-----------ac------------ctttc
i Erythrocebus_patas.Contig3274            n 30 I 71
s Gorilla_beringei.k141_1529327                16116 30 +     19115 AG-AAAAT---AT-GC-------T-AA----T-----ACTTACA----C-----------AC------------CTTGC
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg4240                   180 30 +     16837 ag-aaaat---ac-at-------g-ga----t-----atttata----c-----------at------------cttgc
i Lophocebus_aterrimus.ctg4240             n 301 C 0
s Macaca_arctoides.k141_645026                  1084 42 -      1895 ag-cacat---ac-tt-------t-ct----g-----ttctaca----c-----------actaaccggctcGGCTCTC
i Macaca_arctoides.k141_645026             N 0 N 0
s Macaca_assamensis.Contig57                14641024 30 -  14663190 GG-AAAAT---AC-AC-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Macaca_assamensis.Contig57               n 30 I 7
s Macaca_cyclopis.k119_113522                   2973 30 +     16345 GG-AAAAT---AC-AC-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Macaca_cyclopis.k119_113522              n 30 I 7
s Macaca_fascicularis.k141_751310               1347 30 -     31541 GG-AAAAT---AC-AC-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Macaca_fascicularis.k141_751310          n 30 I 71
s Macaca_fuscata.k119_1151878                   1539 30 +     14929 GG-AAAAT---AC-AC-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Macaca_fuscata.k119_1151878              n 162 I 7
s Macaca_leonina.k141_2333587                   8324 30 -     14201 GG-AAAAT---AC-AC-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Macaca_leonina.k141_2333587              n 651 C 0
s Macaca_maura.k141_187516                       643 30 +     27055 gg-aaaat---ac-ac-------t-aa----t-----atttata----c-----------ac------------ctttc
i Macaca_maura.k141_187516                 n 301 C 0
s Macaca_mulatta.NC_041769.1                 9378913 42 +  79627064 ag-CACAT---AC-TT-------T-CT----A-----TTCTACA----C-----------ACTAACCAGCTCGGCTCTC
i Macaca_mulatta.NC_041769.1               n 30 n 30
s Macaca_nemestrina.KQ006443.1              26588268 30 +  26754465 GG-AAAAT---AC-AC-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Macaca_nemestrina.KQ006443.1             n 30 I 7
s Macaca_nigra.k141_1798113                      672 30 +     14068 GG-AAAAT---AC-AC-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Macaca_nigra.k141_1798113                n 78 I 7
s Macaca_radiata.k141_444140                   61045 42 +     62138 gg-cacat---ac-tt-------t-ct----g-----ttctaca----c-----------actaactggctcGGCTCTC
i Macaca_radiata.k141_444140               n 30 n 30
s Macaca_siberu.k141_521944                    10612 30 -     25677 GG-AAAAT---AC-AC-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Macaca_siberu.k141_521944                n 651 C 0
s Macaca_silenus.Contig4                    39429476 37 +  59449884 AG-CACAT---AC-TT-------t-tt----a-----ttttaca----c-----------tctaaccgg-----ctctc
i Macaca_silenus.Contig4                   N 0 N 0
s Macaca_thibetana.k99_535814                    943 42 +      1553 AG-CACAT---AC-TT-------T-CT----G-----TTCTACA----C-----------ACTAACCAGCTCGGCTCTC
i Macaca_thibetana.k99_535814              n 301 n 301
s Macaca_tonkeana.k141_461656                   6872 30 -     20280 GG-AAAAT---AC-AC-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Macaca_tonkeana.k141_461656              n 367 I 7
s Mandrillus_leucophaeus.scaffold345         5654997 37 +   6717956 ag-cacat---ac-tt-------t-ct----a-----ttttaca----c-----------tctaaccgg-----ctctc
i Mandrillus_leucophaeus.scaffold345       n 37 n 37
s Mandrillus_sphinx.Contig161                3290066 37 -   3298358 ag-cacat---ac-tt-------t-ct----a-----ttttaca----c-----------tctaaccgg-----ctctc
i Mandrillus_sphinx.Contig161              n 30 n 30
s Miopithecus_ogouensis.k141_69083             10919 29 -     35729 AG-AAAAT---AC-AT-------T-AA----T-----AATTATA----C-----------AT------------CTTG-
i Miopithecus_ogouensis.k141_69083         n 30 I 26
s Nasalis_larvatus.k141_879325                  2417 30 -      9328 ag-aaaac---ac-at-------t-aa----t-----atttata----c-----------ac------------ctttc
i Nasalis_larvatus.k141_879325             N 0 I 7
s Pan_paniscus.CM003385.1                  131190975 30 + 247869975 ag-aaaat---at-at-------t-aa----t-----atttata----c-----------ac------------CTTTC
i Pan_paniscus.CM003385.1                  C 0 I 81
s Pan_troglodytes.CM009240.2               110736572 30 - 128755405 ag-aaaat---at-at-------t-aa----t-----atttata----c-----------ac------------CTTTC
i Pan_troglodytes.CM009240.2               C 0 I 81
s Papio_anubis.CM001504.2                   71917028 29 + 124513186 ag-aaaat---ac-at-------t-aa----t-----actTATA----C-----------AT------------CTTG-
i Papio_anubis.CM001504.2                  n 31 C 0
s Papio_cynocephalus.k141_3429977              16035 37 -     29926 ag-cacat---ac-tt-------t-ct----a-----ttctata----c-----------actagccgg-----ctctc
i Papio_cynocephalus.k141_3429977          n 444 n 444
s Papio_hamadryas.Contig219                  1211454 37 +   1262890 ag-cacat---ac-tt-------t-ct----a-----ttttaca----c-----------actagccgg-----ctctc
i Papio_hamadryas.Contig219                n 30 n 30
s Papio_kindae.k141_6113736                      413 37 +     14292 ag-cacat---ac-tt-------t-at----a-----ttctata----c-----------actagccgg-----ctctc
i Papio_kindae.k141_6113736                n 30 n 30
s Papio_papio.k141_3011620                     17409 30 +     19208 AG-AAAAT---AC-AT-------G-CA----T-----ATTTATA----C-----------AT------------CTTGC
i Papio_papio.k141_3011620                 n 78 C 0
s Papio_ursinus.k141_4411934                    9456 37 +     30781 ag-CACAT---ac-tt-------t-ct----a-----ttctata----c-----------actagccgg-----ctctc
i Papio_ursinus.k141_4411934               n 30 n 30
s Piliocolobus_badius.k141_1028465               154 30 -     35776 AG-AAAAT---AT-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTCTC
i Piliocolobus_badius.k141_1028465         n 365 C 0
s Piliocolobus_gordonorum.k141_179565           8208 30 +      8724 AG-AAAAT---AT-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTCTC
i Piliocolobus_gordonorum.k141_179565      N 0 C 0
s Piliocolobus_kirkii.k141_1249799              8347 30 +      8863 AG-AAAAT---AT-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTCTC
i Piliocolobus_kirkii.k141_1249799         n 160 C 0
s Piliocolobus_tephrosceles.PDMG02000160.1   6871737 30 -   7768499 ag-aaaat---at-at-------t-aa----t-----atttata----c-----------ac------------CTCTC
i Piliocolobus_tephrosceles.PDMG02000160.1 N 0 I 685
s Pongo_abelii.CM009264.2                     448512 30 + 129937803 AG-aaact---at-at-------t-aa----t-----atttata----c-----------ac------------CTTTC
i Pongo_abelii.CM009264.2                  C 0 C 0
s Pongo_pygmaeus.ctg419                       445137 30 -    484106 AG-AAACT---AA-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Pongo_pygmaeus.ctg419                    I 364 I 264
s Presbytis_comata.k141_1471558                 7987 30 -     44604 ag-aaaat---at-at-------t-aa----t-----atttata----c-----------ac------------ctctc
i Presbytis_comata.k141_1471558            n 548 C 0
s Presbytis_mitrata.k141_1775118                1975 30 -      4604 ag-aaaat---ac-at-------g-aa----t-----atttata----c-----------at------------cttgc
i Presbytis_mitrata.k141_1775118           n 484 n 484
s Pygathrix_cinerea.k141_865802                13928 30 -     15891 ag-aaaac---ac-at-------t-aa----t-----atttata----c-----------ac------------ttttc
i Pygathrix_cinerea.k141_865802            n 70 I 667
s Pygathrix_nigripes_b.ctg111                  13012871 30 +  14250084 AG-AAAAT---AT-AT-------T-AA----T-----ATTTATG----C-----------AC------------CTTTC
i Pygathrix_nigripes_b.ctg111                 n 78 n 78
s Pygathrix_nigripes_a.k141_751691                7160 30 -     56116 ag-aaaat---at-at-------t-aa----t-----atttatg----c-----------ac------------ctttc
i Pygathrix_nigripes_a.k141_751691           N 0 N 0
s Rhinopithecus_bieti.k119_390069                906 30 +      6100 ag-aaaac---ac-at-------t-aa----t-----atttata----c-----------ac------------ttttc
i Rhinopithecus_bieti.k119_390069          n 367 I 666
s Rhinopithecus_roxellana.NC_044549.1       95156728 30 + 206558726 AG-AAAAC---AC-AT-------T-AA----T-----ATTTATA----C-----------AC------------TTTTC
i Rhinopithecus_roxellana.NC_044549.1      n 78 n 78
s Rhinopithecus_strykeri.ctg67               9531708 30 +   9875253 AG-AAAAC---AC-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTCTC
i Rhinopithecus_strykeri.ctg67             n 293 I 7
s Semnopithecus_entellus.k141_1493593           4053 40 +     15147 ag-aaaac---ac-at-------t-aa----t-----acttata----catattgtgcctat------------cttt-
i Semnopithecus_entellus.k141_1493593      n 29 n 29
s Semnopithecus_hypoleucos.k141_2171334         2211 30 -     17826 ag-aaaat---at-at-------t-aa----t-----atttata----c-----------ac------------ctctc
i Semnopithecus_hypoleucos.k141_2171334    n 29 C 0
s Semnopithecus_johnii.k141_725188              9114 30 +     13410 ag-aaagc---ac-at-------t-aa----t-----atttata----c-----------ac------------ctttc
i Semnopithecus_johnii.k141_725188         n 29 n 29
s Semnopithecus_priam.k141_118164              52334 30 +     54476 ag-aaaat---at-at-------t-aa----t-----atttata----c-----------ac------------ctctc
i Semnopithecus_priam.k141_118164          n 29 n 29
s Semnopithecus_schistaceus.k141_1472625       16268 30 +     20561 ag-aaagc---ac-at-------t-aa----t-----atttata----c-----------ac------------ctttc
i Semnopithecus_schistaceus.k141_1472625   n 29 n 29
s Semnopithecus_vetulus.k141_1062891            4207 30 +      8932 ag-aaaac---ac-at-------t-aa----t-----atttata----c-----------ac------------ctttc
i Semnopithecus_vetulus.k141_1062891       n 29 n 29
s Symphalangus_syndactylus.tarseq_159        7806811 30 -   7865082 AG-AAACT---GT-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTTTC
i Symphalangus_syndactylus.tarseq_159      C 0 C 0
s Theropithecus_gelada.CM009964.1           73630439 29 + 126097711 ag-aaaat---ac-at-------t-aa----t-----actTATA----C-----------AT------------CTTG-
i Theropithecus_gelada.CM009964.1          n 30 I 38
s Trachypithecus_auratus.k141_1212680           3086 30 -      7734 AG-AAAAT---AC-AT-------T-AA----T-----ATTTATA----C-----------AC------------TTCTC
i Trachypithecus_auratus.k141_1212680      n 78 I 7
s Trachypithecus_crepusculus.k141_983722        5896 30 +     17283 ag-aaaat---at-at-------t-aa----t-----atttata----c-----------ac------------ctctc
i Trachypithecus_crepusculus.k141_983722   n 301 C 0
s Trachypithecus_cristatus.k141_133287          3627 30 -      3956 ag-aaaat---ac-at-------t-aa----t-----atttata----c-----------ac------------ttctc
i Trachypithecus_cristatus.k141_133287     n 78 I 7
s Trachypithecus_francoisi.k141_1263395         9927 30 -     10078 AG-AAAAT---AT-AT-------T-AA----T-----ATTTATA----C-----------AC------------CTCTC
i Trachypithecus_francoisi.k141_1263395    n 301 C 0
s Trachypithecus_geei.k141_1647498             10966 30 +     19835 ag-aaaac---ac-at-------t-aa----t-----atttata----c-----------ac------------ctttc
i Trachypithecus_geei.k141_1647498         N 0 I 7
s Trachypithecus_germaini.k141_137070           7179 30 +      8180 AG-AAAAT---AC-AT-------T-AA----t-----atttata----c-----------ac------------ttctc
i Trachypithecus_germaini.k141_137070      n 301 I 7
s Trachypithecus_hatinhensis.k141_651250        8648 29 -     26520 ag-aaaat---ac-at-------t-aa----t-----acttata----c-----------at------------cttg-
i Trachypithecus_hatinhensis.k141_651250   n 78 I 71
s Trachypithecus_laotum.k141_68479              9460 29 -     27453 AG-AAAAT---AC-AT-------T-AA----T-----ACTTata----c-----------at------------cttg-
i Trachypithecus_laotum.k141_68479         n 301 I 38
s Trachypithecus_leucocephalus.k141_45550       4039 40 +     21951 AG-AAAAC---AC-AT-------T-AA----T-----ACTTATA----C-----------AT-ATTGTGCCTATCTTT-
i Trachypithecus_leucocephalus.k141_45550  n 70 I 38
s Trachypithecus_melamera.k141_283087           4706 30 +      6832 ag-aaaat---ac-at-------t-aa----t-----atttata----c-----------ac------------ttctc
i Trachypithecus_melamera.k141_283087      n 78 I 7
s Trachypithecus_obscurus.k141_1492025          1295 30 +      2119 AG-AAAAT---AC-AT-------T-AA----T-----ATTTATA----C-----------AC------------TTCTC
i Trachypithecus_obscurus.k141_1492025     n 78 I 7
s Trachypithecus_phayrei.ctg82               7147780 30 +   9479603 ag-aaaat---at-at-------t-aa----t-----atttata----c-----------ac------------ctctc
i Trachypithecus_phayrei.ctg82             n 78 C 0
s Trachypithecus_pileatus.k141_864539           3962 30 -     12784 ag-aaaac---ac-at-------t-aa----t-----atttata----c-----------ac------------ctttc
i Trachypithecus_pileatus.k141_864539      N 0 I 7

a score=0.000000
s hg38.chrM                                    12084  7 +     16569 CC--C----------C-ATT
s Allenopithecus_nigroviridis.k141_4289073     26458  7 +    127561 cc--c----------a-atc
i Allenopithecus_nigroviridis.k141_4289073 n 7 I 17270
s Allochrocebus_lhoesti.k141_1513956            7670  7 +     44761 GC--C----------T-ATC
i Allochrocebus_lhoesti.k141_1513956       I 30 I 33
s Allochrocebus_preussi.k141_3466725            7687  7 +     53249 gc--c----------t-atc
i Allochrocebus_preussi.k141_3466725       I 30 I 33
s Allochrocebus_solatus.k141_501416            16961  7 -     21276 cc--c----------t-att
i Allochrocebus_solatus.k141_501416        n 7 n 7
s Cercocebus_atys.KQ010939.1                29209548  7 +  29793205 GC--C----------T-ATC
i Cercocebus_atys.KQ010939.1               I 30 C 0
s Cercocebus_chrysogaster.k141_129667          30379  7 -     34785 gc--c----------t-atc
i Cercocebus_chrysogaster.k141_129667      I 30 C 0
s Cercocebus_lunulatus.k141_1448852             6794  7 -     50786 gc--c----------t-atc
i Cercocebus_lunulatus.k141_1448852        I 30 C 0
s Cercocebus_torquatus.k141_2422586              194  6 +      2016 AC--C----------T-At-
i Cercocebus_torquatus.k141_2422586        n 37 I 31
s Cercopithecus_ascanius.k141_1200845           3072  5 -      3077 CC--C----------C-A--
i Cercopithecus_ascanius.k141_1200845      C 0 n 0
s Cercopithecus_cephus.k141_1222642             3031  7 -     26169 CC--C----------C-ATC
i Cercopithecus_cephus.k141_1222642        C 0 n 0
s Cercopithecus_diana.k141_2649081              6878  7 -     35932 GC--C----------T-ATC
i Cercopithecus_diana.k141_2649081         I 30 I 125
s Cercopithecus_hamlyni.k141_1438427            4672  7 -     46742 gc--c----------t-atc
i Cercopithecus_hamlyni.k141_1438427       I 30 I 124
s Cercopithecus_lowei.k141_1304160              2094  7 -      4275 gc--c----------t-atc
i Cercopithecus_lowei.k141_1304160         I 30 I 404
s Cercopithecus_albogularis.ctg283                 1202247  7 -   1273525 CC--C----------C-ATC
i Cercopithecus_albogularis.ctg283               C 0 C 0
s Cercopithecus_mona.ctg42                  15303162  7 +  20621893 GC--C----------T-ATC
i Cercopithecus_mona.ctg42                 I 30 I 33
s Cercopithecus_neglectus.k141_790885           1867  7 -      7576 CC--C----------C-ATC
i Cercopithecus_neglectus.k141_790885      C 0 C 0
s Cercopithecus_nictitans.k141_2579170           954  7 -     21268 CC--C----------C-ATC
i Cercopithecus_nictitans.k141_2579170     C 0 C 0
s Cercopithecus_petaurista.k141_2710281         5992  7 +     15186 CC--T----------C-ATC
i Cercopithecus_petaurista.k141_2710281    C 0 C 0
s Cercopithecus_pogonias.k141_2349534          12149  7 +     31427 GC--C----------T-ATC
i Cercopithecus_pogonias.k141_2349534      I 30 I 330
s Cercopithecus_roloway.k141_2783013           27677  7 -     43083 gc--c----------t-atc
i Cercopithecus_roloway.k141_2783013       I 30 I 125
s Chlorocebus_aethiops.ctg56                12888904  7 +  17892486 gc--c----------t-atc
i Chlorocebus_aethiops.ctg56               I 30 I 33
s Chlorocebus_pygerythrus.k141_561490           2131  7 +      2603 GC--C----------T-ATC
i Chlorocebus_pygerythrus.k141_561490      n 7 n 7
s Chlorocebus_sabaeus.CM001941.2            80962465  7 + 126035930 GC--C----------T-ATC
i Chlorocebus_sabaeus.CM001941.2           n 803 I 33
s Colobus_angolensis.KN980972.1              2050870  7 +   4172716 CC--C----------T-ATC
i Colobus_angolensis.KN980972.1            C 0 I 740
s Colobus_guereza.LG01                      91065187 19 + 200372422 CACACGCTTTTTCTTT-CTT
i Colobus_guereza.LG01                     N 0 N 0
s Colobus_polykomos.k141_36816                   411  7 -     12041 cc--c----------t-atc
i Colobus_polykomos.k141_36816             n 78 I 740
s Erythrocebus_patas.Contig40               15741715  7 +  21278523 GC--C----------T-ATC
i Erythrocebus_patas.Contig40              I 30 I 33
s Gorilla_beringei.k141_1529327                16146  7 +     19115 AC--C----------T-ATT
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg4240                   210  7 +     16837 ac--c----------t-atc
i Lophocebus_aterrimus.ctg4240             C 0 C 0
s Macaca_arctoides.k141_424239                  8539  7 +      8889 CC--C----------C-ATC
i Macaca_arctoides.k141_424239             N 0 C 0
s Macaca_assamensis.Contig5                 34321628  7 -  60120075 gc--c----------t-atc
i Macaca_assamensis.Contig5                I 30 I 33
s Macaca_cyclopis.k119_512377                   5160  7 +     21625 GC--C----------T-ATC
i Macaca_cyclopis.k119_512377              I 30 I 41
s Macaca_fascicularis.k141_747886              23751  7 +     40098 gc--c----------t-atc
i Macaca_fascicularis.k141_747886          I 30 I 125
s Macaca_fuscata.k119_770391                     319  7 -      1412 gc--c----------t-atc
i Macaca_fuscata.k119_770391               n 7 I 457
s Macaca_leonina.k141_2333587                   8354  7 -     14201 CC--C----------C-ATC
i Macaca_leonina.k141_2333587              C 0 C 0
s Macaca_maura.k141_187516                       673  7 +     27055 cc--c----------c-atc
i Macaca_maura.k141_187516                 C 0 C 0
s Macaca_mulatta.NC_041758.1                34258926  7 - 187317192 GC--C----------T-ATC
i Macaca_mulatta.NC_041758.1               I 30 N 0
s Macaca_nemestrina.KQ005114.1               9180035  7 -   9503891 CC--C----------T-ATC
i Macaca_nemestrina.KQ005114.1             I 30 I 33
s Macaca_nigra.k141_2036066                      247  7 -      1371 gc--c----------t-atc
i Macaca_nigra.k141_2036066                n 7 I 458
s Macaca_radiata.k141_501718                    1920  7 +     18260 gc--c----------t-atc
i Macaca_radiata.k141_501718               I 30 I 33
s Macaca_siberu.k141_521944                    10642  7 -     25677 CC--C----------C-ATC
i Macaca_siberu.k141_521944                C 0 C 0
s Macaca_silenus.Contig669                     78677  5 +    115720 ac--c----------t-a--
i Macaca_silenus.Contig669                 N 0 C 0
s Macaca_thibetana.k99_252870                   1005  7 -      7401 CC--C----------C-ATC
i Macaca_thibetana.k99_252870              n 301 C 0
s Macaca_tonkeana.k141_828967                   3141  7 -     28304 gc--c----------t-atc
i Macaca_tonkeana.k141_828967              n 7 I 33
s Mandrillus_leucophaeus.scaffold154336         1158  7 -      1991 ac--c----------t-atc
i Mandrillus_leucophaeus.scaffold154336    n 37 I 458
s Mandrillus_sphinx.Contig7                 14440516  7 +  51421834 GC--C----------T-ATC
i Mandrillus_sphinx.Contig7                I 30 C 0
s Miopithecus_ogouensis.k141_2701950            3708  7 +     10686 GC--C----------T-ATC
i Miopithecus_ogouensis.k141_2701950       I 30 I 458
s Nasalis_larvatus.k141_880090                 19778  7 -     24469 cc--c----------t-atc
i Nasalis_larvatus.k141_880090             n 7 n 7
s Pan_paniscus.CM003392.1                  115197804  7 - 138149186 CC--C----------C-ATC
i Pan_paniscus.CM003392.1                  I 1143 I 41
s Pan_troglodytes.CM009247.2                88039768  7 - 110513671 CC--C----------C-ATC
i Pan_troglodytes.CM009247.2               I 2090 I 41
s Papio_anubis.CM001495.2                   34019886  8 - 183742232 GC--C----------TCATC
i Papio_anubis.CM001495.2                  I 31 I 117
s Papio_cynocephalus.k141_3719535               4509  7 +      6274 AC--C----------T-ATC
i Papio_cynocephalus.k141_3719535          n 444 C 0
s Papio_hamadryas.Contig36                  14843165  7 +  22161365 GC--C----------T-atc
i Papio_hamadryas.Contig36                 I 30 C 0
s Papio_kindae.k141_2318205                    17363  7 -     48934 gc--c----------t-atc
i Papio_kindae.k141_2318205                I 30 C 0
s Papio_papio.k141_3011620                     17439  7 +     19208 GC--C----------T-ATC
i Papio_papio.k141_3011620                 C 0 C 0
s Papio_ursinus.k141_2685680                   11696  7 +     15956 gc--c----------t-atc
i Papio_ursinus.k141_2685680               I 30 C 0
s Piliocolobus_badius.k141_1028465               184  7 -     35776 CC--C----------T-ATC
i Piliocolobus_badius.k141_1028465         C 0 I 801
s Piliocolobus_gordonorum.k141_179565           8238  7 +      8724 CC--C----------T-ATC
i Piliocolobus_gordonorum.k141_179565      C 0 N 0
s Piliocolobus_kirkii.k141_1249799              8377  7 +      8863 CC--C----------T-ATC
i Piliocolobus_kirkii.k141_1249799         C 0 n 0
s Piliocolobus_tephrosceles.PDMG02000071.1  32994570  7 -  33944683 CC--C----------T-ATC
i Piliocolobus_tephrosceles.PDMG02000071.1 n 685 I 33
s Pongo_abelii.CM009264.2                     448542  7 + 129937803 CT--C----------T-ATT
i Pongo_abelii.CM009264.2                  C 0 C 0
s Pongo_pygmaeus.ctg463                       317231  7 -    482523 AC--C----------T-ATT
i Pongo_pygmaeus.ctg463                    n 264 C 0
s Presbytis_comata.k141_1471558                 8017  7 -     44604 cc--c----------t-atc
i Presbytis_comata.k141_1471558            C 0 I 33
s Presbytis_mitrata.k141_1768564                6151  7 +     41855 CC--C----------T-ATC
i Presbytis_mitrata.k141_1768564           n 484 n 484
s Pygathrix_cinerea.k141_930615                  577  7 +     28333 cc--c----------t-atc
i Pygathrix_cinerea.k141_930615            n 667 n 667
s Pygathrix_nigripes_b.ctg2                    28527488  7 +  35829140 cc--c----------t-atc
i Pygathrix_nigripes_b.ctg2                   n 78 I 256
s Pygathrix_nigripes_a.k141_1283119               5774  7 -      5953 Cc--c----------t-atc
i Pygathrix_nigripes_a.k141_1283119          N 0 N 0
s Rhinopithecus_bieti.k119_570255              20080  7 +     23176 cc--c----------t-atc
i Rhinopithecus_bieti.k119_570255          n 666 I 256
s Rhinopithecus_roxellana.NC_044549.1       86161089  7 + 206558726 CC--C----------T-ATC
i Rhinopithecus_roxellana.NC_044549.1      n 78 I 256
s Rhinopithecus_strykeri.ctg27              28425752  7 -  35768626 CC--C----------T-ATC
i Rhinopithecus_strykeri.ctg27             n 7 I 801
s Semnopithecus_entellus.k141_792991            5416  7 +      5734 cc--c----------t-atc
i Semnopithecus_entellus.k141_792991       n 29 I 256
s Semnopithecus_hypoleucos.k141_2171334         2241  7 -     17826 cc--c----------t-atc
i Semnopithecus_hypoleucos.k141_2171334    C 0 n 0
s Semnopithecus_johnii.k141_491207               332  7 +     23298 cc--c----------t-atc
i Semnopithecus_johnii.k141_491207         n 29 n 29
s Semnopithecus_priam.k141_506936               9298 15 -     37067 AT--CAC-GGCAGT-T-CTA
i Semnopithecus_priam.k141_506936          n 29 n 29
s Semnopithecus_schistaceus.k141_1074668         719  7 -     23306 CC--C----------T-ATC
i Semnopithecus_schistaceus.k141_1074668   n 29 n 29
s Semnopithecus_vetulus.k141_347326             2479  7 -      3305 CC--C----------t-atc
i Semnopithecus_vetulus.k141_347326        n 29 n 29
s Symphalangus_syndactylus.tarseq_159        7806841  7 -   7865082 AC--C----------T-ATT
i Symphalangus_syndactylus.tarseq_159      C 0 I 32
s Theropithecus_gelada.CM009954.1           34437380  7 - 186847797 GC--C----------T-ATC
i Theropithecus_gelada.CM009954.1          I 30 C 0
s Trachypithecus_auratus.k141_1518273           5872  7 +     95245 cc--c----------t-atc
i Trachypithecus_auratus.k141_1518273      n 7 n 7
s Trachypithecus_crepusculus.k141_983722        5926  7 +     17283 cc--c----------t-atc
i Trachypithecus_crepusculus.k141_983722   C 0 C 0
s Trachypithecus_cristatus.k141_133281         25420  7 -     25719 cc--c----------t-atc
i Trachypithecus_cristatus.k141_133281     n 7 I 74
s Trachypithecus_francoisi.k141_1263395         9957  7 -     10078 CC--C----------T-ATC
i Trachypithecus_francoisi.k141_1263395    C 0 C 0
s Trachypithecus_geei.k141_1394385                 2  7 +     32531 CC--C----------T-ATC
i Trachypithecus_geei.k141_1394385         n 7 n 7
s Trachypithecus_germaini.k141_819548           1259  7 -      1380 cc--c----------t-atc
i Trachypithecus_germaini.k141_819548      n 7 n 7
s Trachypithecus_hatinhensis.k141_710675        9264  7 +     19025 gc--c----------t-atc
i Trachypithecus_hatinhensis.k141_710675   n 71 I 256
s Trachypithecus_laotum.k141_317791                2  7 +      3021 Cc--c----------t-atc
i Trachypithecus_laotum.k141_317791        n 38 C 0
s Trachypithecus_leucocephalus.k141_784463      2326  7 -      2447 cc--c----------t-atc
i Trachypithecus_leucocephalus.k141_784463 n 38 n 38
s Trachypithecus_melamera.k141_920108           5771  7 -      5892 cc--c----------t-atc
i Trachypithecus_melamera.k141_920108      n 7 n 7
s Trachypithecus_obscurus.k141_364986           9416  7 +      9567 CC--C----------T-ATC
i Trachypithecus_obscurus.k141_364986      n 7 I 74
s Trachypithecus_phayrei.ctg82               7147810  7 +   9479603 cc--c----------t-atc
i Trachypithecus_phayrei.ctg82             C 0 C 0
s Trachypithecus_pileatus.k141_988280              2  7 +     32535 CC--C----------T-Atc
i Trachypithecus_pileatus.k141_988280      n 7 I 74

a score=0.000000
s hg38.chrM                                    12091 33 +     16569 CTCC-----------T---C-----C-----------TAT--CCCT-----CA-------ACCCCGACATCAT-T---AC-------------------C
s Allenopithecus_nigroviridis.k141_4304654      7409 33 +     24829 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Allenopithecus_nigroviridis.k141_4304654 I 7 I 775
s Allochrocebus_lhoesti.k141_1288440            2094 33 -     10247 CTCC-----------T---T-----C-----------TAT--CCCT-----TA-------ACCCTAATATTAT-T---CT-------------------A
i Allochrocebus_lhoesti.k141_1288440       n 33 I 41
s Allochrocebus_preussi.k141_1036589            6614 33 -     14749 CTCC-----------T---T-----C-----------TAT--CCCT-----TA-------ACCCTAATATTAT-T---CT-------------------A
i Allochrocebus_preussi.k141_1036589       I 7 I 702
s Allochrocebus_solatus.k141_1664502            6373 33 +     14510 CTCC-----------T---T-----C-----------TAT--CCCT-----TA-------ACCCTAATATTAT-T---CT-------------------A
i Allochrocebus_solatus.k141_1664502       I 7 I 41
s Cercocebus_atys.KQ010939.1                29209555 33 +  29793205 TTCC-----------T---A-----T-----------TAT--CCTT-----AA-------ACCATAAAATTAT-T---AT-------------------G
i Cercocebus_atys.KQ010939.1               C 0 I 92
s Cercocebus_chrysogaster.k141_129667          30386 33 -     34785 ttcc-----------t---a-----t-----------tat--cctt-----aa-------accctaaaattat-t---at-------------------g
i Cercocebus_chrysogaster.k141_129667      C 0 I 41
s Cercocebus_lunulatus.k141_1448852             6801 33 -     50786 ttcc-----------t---a-----t-----------tat--cctt-----aa-------accataaaattat-t---at-------------------g
i Cercocebus_lunulatus.k141_1448852        C 0 I 92
s Cercocebus_torquatus.k141_301629              6886 33 -     11288 ttcc-----------t---a-----t-----------tat--cctt-----aa-------accctaaaattat-t---at-------------------g
i Cercocebus_torquatus.k141_301629         I 37 I 8
s Cercopithecus_ascanius.k141_4105459            138 33 -      9485 ccCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Cercopithecus_ascanius.k141_4105459      n 0 I 31
s Cercopithecus_cephus.k141_2148804              137 33 -     15429 ccCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Cercopithecus_cephus.k141_2148804        n 0 I 31
s Cercopithecus_diana.k141_821896               4277 32 -     38531 -TTC-----------T---A-----T-----------TAT--ccct-----aa-------accttaagattat-t---at-------------------a
i Cercopithecus_diana.k141_821896          n 125 n 125
s Cercopithecus_hamlyni.k141_285549            23011 33 -     38690 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Cercopithecus_hamlyni.k141_285549        n 124 I 31
s Cercopithecus_lowei.k141_1815585              3167 33 +      4563 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---AT-------------------A
i Cercopithecus_lowei.k141_1815585         I 7 I 774
s Cercopithecus_albogularis.ctg283                 1202254 33 -   1273525 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Cercopithecus_albogularis.ctg283               C 0 n 0
s Cercopithecus_mona.ctg49                  18626821 33 +  18760735 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---AT-------------------A
i Cercopithecus_mona.ctg49                 I 7 I 31
s Cercopithecus_neglectus.k141_790885           1874 33 -      7576 CTCC-----------C---C-----C-----------TGT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Cercopithecus_neglectus.k141_790885      C 0 I 31
s Cercopithecus_nictitans.k141_2579170           961 33 -     21268 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Cercopithecus_nictitans.k141_2579170     C 0 I 31
s Cercopithecus_petaurista.k141_2710281         5999 33 +     15186 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Cercopithecus_petaurista.k141_2710281    C 0 I 31
s Cercopithecus_pogonias.k141_1251620           2820 33 +      6713 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---AT-------------------A
i Cercopithecus_pogonias.k141_1251620      n 330 I 31
s Cercopithecus_roloway.k141_2547499           12815 32 +     32417 -ttc-----------t---a-----t-----------tat--ccct-----aa-------accttaagattat-t---at-------------------a
i Cercopithecus_roloway.k141_2547499       n 125 I 222
s Chlorocebus_aethiops.ctg532                 224972 33 -    463733 Ctcc-----------t---t-----c-----------tat--ccct-----ta-------accctaatattat-t---ct-------------------a
i Chlorocebus_aethiops.ctg532              I 7 I 702
s Chlorocebus_pygerythrus.k141_1433182          7339 33 -     17062 ctcc-----------t---t-----c-----------tat--ccct-----ta-------accctaatattat-t---ct-------------------a
i Chlorocebus_pygerythrus.k141_1433182     I 7 I 41
s Chlorocebus_sabaeus.CM001949.2            87034310 33 - 125710982 Ctcc-----------t---t-----c-----------tat--ccct-----ta-------accctaatattat-t---ct-------------------a
i Chlorocebus_sabaeus.CM001949.2           n 33 I 41
s Colobus_angolensis.KN985235.1               105135 33 -    226780 CTCC-----------T---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Colobus_angolensis.KN985235.1            n 740 n 740
s Colobus_guereza.LG01                     131583066 33 - 200372422 CTCC-----------T---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Colobus_guereza.LG01                     N 0 N 0
s Colobus_polykomos.k141_1487623                7133 33 -     12485 ctcc-----------t---t-----c-----------tat--ccct-----ta-------accctaatattat-t---ct-------------------a
i Colobus_polykomos.k141_1487623           n 740 n 740
s Erythrocebus_patas.Contig2334                19397 33 +     28385 attc-----------t---t-----c-----------tat--ccct-----ta-------accctaatattat-t---ct-------------------a
i Erythrocebus_patas.Contig2334            n 33 n 33
s Gorilla_beringei.k141_1529327                16153 33 +     19115 CTCC-----------T---A-----T-----------TAT--CCCT-----AA-------ACCCTAAGATTAT-T---AT-------------------A
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg4240                   217 33 +     16837 ttcc-----------t---a-----t-----------tat--cctt-----at-------accctaaaattat-t---at-------------------g
i Lophocebus_aterrimus.ctg4240             C 0 C 0
s Macaca_arctoides.k141_424239                  8546 33 +      8889 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_arctoides.k141_424239             C 0 N 0
s Macaca_assamensis.Contig57                14641061 33 -  14663190 TTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_assamensis.Contig57               I 7 I 31
s Macaca_cyclopis.k119_113522                   3010 33 +     16345 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_cyclopis.k119_113522              I 7 I 775
s Macaca_fascicularis.k141_888912                650 41 -     45859 ---C-----------T---C-----caatcattcttctat--ccct-----ca-------accccaatatcat-t---ct-------------------a
i Macaca_fascicularis.k141_888912          n 125 C 0
s Macaca_fuscata.k119_1151878                   1576 33 +     14929 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_fuscata.k119_1151878              I 7 I 31
s Macaca_leonina.k141_2333587                   8361 32 -     14201 CTCC-----------C---C-----C------------AT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_leonina.k141_2333587              C 0 I 768
s Macaca_maura.k141_187516                       680 32 +     27055 ctcc-----------C---C-----C------------AT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_maura.k141_187516                 C 0 I 775
s Macaca_mulatta.NC_041758.1               122374148 33 - 187317192 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_mulatta.NC_041758.1               N 0 N 0
s Macaca_nemestrina.KQ006443.1              26588305 32 +  26754465 CTCC-----------C---C-----C------------AT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_nemestrina.KQ006443.1             I 7 I 775
s Macaca_nigra.k141_1798113                      709 32 +     14068 CTCC-----------C---C-----C------------AT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_nigra.k141_1798113                I 7 I 775
s Macaca_radiata.k141_950901                    3358 33 -     16265 TTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_radiata.k141_950901               n 33 I 775
s Macaca_siberu.k141_521944                    10649 32 -     25677 CTCC-----------C---C-----C------------AT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_siberu.k141_521944                C 0 I 775
s Macaca_silenus.Contig669                     78682 32 +    115720 -ttc-----------t---a-----t-----------tat--ccct-----aa-------accttaagattat-t---at-------------------a
i Macaca_silenus.Contig669                 C 0 N 0
s Macaca_thibetana.k99_252870                   1012 33 -      7401 TTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_thibetana.k99_252870              C 0 I 772
s Macaca_tonkeana.k141_461656                   6909 32 -     20280 CTCC-----------C---C-----C------------AT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Macaca_tonkeana.k141_461656              I 7 I 775
s Mandrillus_leucophaeus.scaffold284         9282949 33 -  27319382 TTCC-----------T---A-----T-----------TAT--CCTT-----AA-------ACCCTAAAATTAT-T---AT-------------------G
i Mandrillus_leucophaeus.scaffold284       I 37 I 231
s Mandrillus_sphinx.Contig7                 14440523 33 +  51421834 TTCC-----------T---A-----T-----------TAT--CCTT-----AA-------ACCATAAAATTAT-T---AT-------------------G
i Mandrillus_sphinx.Contig7                C 0 C 0
s Miopithecus_ogouensis.k141_744758             1754 33 +     16671 CTCC-----------C---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Miopithecus_ogouensis.k141_744758        n 458 I 31
s Nasalis_larvatus.k141_879325                  2454 33 -      9328 ctcc-----------t---c-----c-----------tat--ccct-----ta-------accctagtattat-t---ct-------------------a
i Nasalis_larvatus.k141_879325             I 7 N 0
s Pan_paniscus.CM003390.1                   99458196 33 - 162613886 CTCC-----------T---A-----T-----------TAT--CCCT-----AA-------ACCCTAAGATTAT-T---AT-------------------A
i Pan_paniscus.CM003390.1                  n 41 I 92
s Pan_troglodytes.CM009245.2                57354248 33 + 156046543 CTCC-----------T---A-----T-----------TAT--CCCT-----AA-------ACCCTAAGATTAT-T---AT-------------------A
i Pan_troglodytes.CM009245.2               n 41 C 0
s Papio_anubis.CM001504.2                   71917057 30 + 124513186 ---C-----------T---A-----T-----------TAT--CCTT-----GA-------AGTCTAAAATTAT-T---AT-------------------G
i Papio_anubis.CM001504.2                  C 0 C 0
s Papio_cynocephalus.k141_3719535               4516 33 +      6274 TTCC-----------T---A-----T-----------TAT--CCTT-----AT-------ACCCTAAAATTAT-T---AT-------------------G
i Papio_cynocephalus.k141_3719535          C 0 C 0
s Papio_hamadryas.Contig36                  14843172 33 +  22161365 ttCC-----------T---A-----T-----------TAT--Cctt-----aa-------accataaAATTAT-T---AT-------------------G
i Papio_hamadryas.Contig36                 C 0 C 0
s Papio_kindae.k141_2318205                    17370 33 -     48934 ttcc-----------t---a-----t-----------tat--cctt-----aa-------accataaaattat-t---at-------------------g
i Papio_kindae.k141_2318205                C 0 I 266
s Papio_papio.k141_3011620                     17446 33 +     19208 TTCC-----------T---A-----T-----------TAT--CCTT-----AT-------ACCCTAAAATTAT-T---AT-------------------G
i Papio_papio.k141_3011620                 C 0 C 0
s Papio_ursinus.k141_2685680                   11703 33 +     15956 ttcc-----------t---a-----t-----------tat--cctt-----aa-------accataaaattat-t---at-------------------g
i Papio_ursinus.k141_2685680               C 0 C 0
s Piliocolobus_badius.k141_610607                870 33 -      7187 CTCC-----------T---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Piliocolobus_badius.k141_610607          n 801 I 31
s Piliocolobus_gordonorum.k141_668257           2385 33 -     15642 CTCC-----------T---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Piliocolobus_gordonorum.k141_668257      N 0 I 31
s Piliocolobus_kirkii.k141_1218120              6953 33 +     20242 CTCC-----------T---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Piliocolobus_kirkii.k141_1218120         n 0 I 31
s Piliocolobus_tephrosceles.PDMG02000330.1   3887943 33 +   3937312 CTCC-----------T---C-----C-----------TAT--CTCT-----TA-------ACCCTAATATTAT-G---CT-------------------A
i Piliocolobus_tephrosceles.PDMG02000330.1 n 33 I 754
s Pongo_abelii.CM009264.2                     448549 33 + 129937803 CTCC-----------T---A-----T-----------TAT--CTCT-----AA-------ACCCTAAAATTAT-T---AT-------------------A
i Pongo_abelii.CM009264.2                  C 0 I 41
s Pongo_pygmaeus.ctg463                       317238 33 -    482523 CTCC-----------T---A-----T-----------TAT--CCCT-----AA-------ACCCTAAGATTAC-T---AT-------------------A
i Pongo_pygmaeus.ctg463                    C 0 C 0
s Presbytis_comata.k141_289026                 11502 33 -     12016 attc-----------t---c-----c-----------tat--ccct-----ta-------accccagtattat-t---ct-------------------a
i Presbytis_comata.k141_289026             n 33 n 33
s Presbytis_mitrata.k141_629227                11438 33 +     28267 attc-----------t---c-----c-----------tat--ccct-----ta-------accccagtattat-t---ct-------------------a
i Presbytis_mitrata.k141_629227            n 484 n 484
s Pygathrix_cinerea.k141_1343066                2407 33 -      2528 ctcc-----------t---c-----c-----------tat--ccct-----ta-------accctaatattat-t---at-------------------a
i Pygathrix_cinerea.k141_1343066           n 667 n 667
s Pygathrix_nigripes_b.ctg311                     73056 34 -   1369354 ctcc-----------t---t-t---c-----------tat--ccct-----ta-------accctaatattat-t---ct-------------------a
i Pygathrix_nigripes_b.ctg311                 n 256 T 3848
s Pygathrix_nigripes_a.k141_1095160               4528 33 +     49192 ctcc-----------t---t-----c-----------tat--ccct-----ta-------accctaatattat-t---ct-------------------a
i Pygathrix_nigripes_a.k141_1095160          N 0 N 0
s Rhinopithecus_bieti.k119_934608               2899 33 +      9212 ctcc-----------t---t-----c-----------tat--ccct-----ta-------accctaatattat-t---ct-------------------a
i Rhinopithecus_bieti.k119_934608          n 256 n 256
s Rhinopithecus_roxellana.NC_044555.1       11568121 33 + 154578354 ctcc-----------t---t-----c-----------tat--ccct-----ta-------accctaatattat-t---ct-------------------a
i Rhinopithecus_roxellana.NC_044555.1      n 256 n 256
s Rhinopithecus_strykeri.ctg67               9531745 33 +   9875253 ctcc-----------t---t-----c-----------tat--ccct-----ta-------accctaatattat-t---ct-------------------a
i Rhinopithecus_strykeri.ctg67             I 7 n 801
s Semnopithecus_entellus.k141_463041           10303 41 -     42431 ---CATCTATCTTCCT---A-----T-----------TAT--CCTT-----AT-------ACCCTAAAATTAT-C---AT-------------------G
i Semnopithecus_entellus.k141_463041       I 29 I 8
s Semnopithecus_hypoleucos.k141_2314638          716 41 -      3947 ---CATCTATCTTCCT---A-----T-----------tat--cctt-----AT-------ACCCTAAAATTAT-C---AT-------------------G
i Semnopithecus_hypoleucos.k141_2314638    I 29 I 8
s Semnopithecus_johnii.k141_1161280              655 41 -     11504 ---catctatcttcct---a-----t-----------tat--cctt-----at-------accctaaaattat-c---at-------------------g
i Semnopithecus_johnii.k141_1161280        I 29 I 8
s Semnopithecus_priam.k141_842164                783 41 -      4001 ---CATctatcttcct---a-----t-----------tat--cctt-----at-------accctaaaattat-c---at-------------------g
i Semnopithecus_priam.k141_842164          I 29 I 8
s Semnopithecus_schistaceus.k141_1231873         839 41 +      4128 ---catctatcttcct---a-----t-----------tat--cctt-----at-------accctaaaattat-c---at-------------------g
i Semnopithecus_schistaceus.k141_1231873   I 29 I 8
s Semnopithecus_vetulus.k141_1248868             802 41 +     26236 ---catctatcttcct---a-----t-----------tat--cctt-----at-------accctaaaattat-c---at-------------------g
i Semnopithecus_vetulus.k141_1248868       I 29 I 8
s Symphalangus_syndactylus.tarseq_252         926502 33 -    984445 CTCC-----------T---A-----T-----------TAT--CTCT-----AA-------ACCCTAAAATTAT-T---AT-------------------A
i Symphalangus_syndactylus.tarseq_252      I 2459 I 220
s Theropithecus_gelada.CM009954.1           34437387 33 - 186847797 TTCC-----------T---A-----T-----------TAT--CCTT-----AA-------ACCATAAAATTAT-T---AT-------------------G
i Theropithecus_gelada.CM009954.1          C 0 I 41
s Trachypithecus_auratus.k141_1212680           3123 33 -      7734 ATTC-----------T---C-----C-----------TAT--CCCT-----CA-------ACCCTAATATTAT-T---AT-------------------A
i Trachypithecus_auratus.k141_1212680      I 7 n 7
s Trachypithecus_crepusculus.k141_983722        5933 33 +     17283 attc-----------t---c-----c-----------tat--ccct-----ca-------accccagtattat-t---ct-------------------a
i Trachypithecus_crepusculus.k141_983722   C 0 n 0
s Trachypithecus_cristatus.k141_133287          3664 33 -      3956 attc-----------t---c-----c-----------tat--ccct-----ca-------accctaatattat-t---at-------------------a
i Trachypithecus_cristatus.k141_133287     I 7 n 74
s Trachypithecus_francoisi.k141_1263395         9964 33 -     10078 ATTC-----------T---C-----C-----------TAT--CCCT-----CA-------ACCCCAGTATTAT-T---CT-------------------A
i Trachypithecus_francoisi.k141_1263395    C 0 n 0
s Trachypithecus_geei.k141_1647498             11003 33 +     19835 ctcc-----------t---c-----c-----------tat--ccct-----ta-------accctagtattat-t---ct-------------------a
i Trachypithecus_geei.k141_1647498         I 7 N 0
s Trachypithecus_germaini.k141_137070           7216 33 +      8180 attc-----------t---c-----c-----------tat--ccct-----ca-------accctaatattat-t---at-------------------a
i Trachypithecus_germaini.k141_137070      I 7 n 7
s Trachypithecus_hatinhensis.k141_228744           9 33 -     22542 ATTC-----------T---C-----C-----------TAT--CCCT-----CA-------ACCCCAGTATTAT-T---CT-------------------A
i Trachypithecus_hatinhensis.k141_228744   n 256 n 256
s Trachypithecus_laotum.k141_317791                9 33 +      3021 attc-----------t---c-----c-----------tat--ccct-----ca-------accccagtattat-t---ct-------------------a
i Trachypithecus_laotum.k141_317791        C 0 I 41
s Trachypithecus_leucocephalus.k141_3432           9 33 +     34692 ATTC-----------T---C-----C-----------TAT--CCCT-----CA-------ACCCCAGTATTAT-T---CT-------------------A
i Trachypithecus_leucocephalus.k141_3432   n 38 I 41
s Trachypithecus_melamera.k141_283087           4743 33 +      6832 attc-----------t---c-----c-----------tat--ccct-----ca-------accctaatattat-t---at-------------------a
i Trachypithecus_melamera.k141_283087      I 7 I 767
s Trachypithecus_obscurus.k141_1492025          1332 33 +      2119 ATTC-----------T---C-----C-----------TAT--CCCT-----CA-------ACCCTAATATTAT-T---AT-------------------A
i Trachypithecus_obscurus.k141_1492025     I 7 n 74
s Trachypithecus_phayrei.ctg82               7147817 33 +   9479603 attc-----------t---c-----c-----------tat--ccct-----ca-------accccagtattat-t---ct-------------------a
i Trachypithecus_phayrei.ctg82             C 0 n 0
s Trachypithecus_pileatus.k141_864539           3999 33 -     12784 ctcc-----------t---c-----c-----------tat--ccct-----ta-------accctagtattat-t---ct-------------------a
i Trachypithecus_pileatus.k141_864539      I 7 n 74

a score=0.000000
s hg38.chrM                                    12124  8 +     16569 GGGT-TTT-----C
s Allenopithecus_nigroviridis.k141_3364170     10107  8 -     35425 gagt-ttg-----c
i Allenopithecus_nigroviridis.k141_3364170 n 775 C 0
s Allochrocebus_lhoesti.k141_1513956            7710  8 +     44761 TGGT-TTG-----C
i Allochrocebus_lhoesti.k141_1513956       I 33 C 0
s Allochrocebus_preussi.k141_3466725            7727  8 +     53249 tggt-ttg-----c
i Allochrocebus_preussi.k141_3466725       I 33 I 84
s Allochrocebus_solatus.k141_1967293           10849  8 +     22295 GAGT-TTG-----C
i Allochrocebus_solatus.k141_1967293       I 59 I 84
s Cercocebus_atys.KQ010367.1                11407816  8 -  11668111 GGTT-TTA-----T
i Cercocebus_atys.KQ010367.1               n 92 C 0
s Cercocebus_chrysogaster.k141_1945715         88826  8 -    105757 ggtt-tta-----t
i Cercocebus_chrysogaster.k141_1945715     n 41 C 0
s Cercocebus_lunulatus.k141_5051340             1835  8 +     26539 GAGT-TTG-----C
i Cercocebus_lunulatus.k141_5051340        I 30 C 0
s Cercocebus_torquatus.k141_2422586              231  8 +      2016 GGTT-TTA-----T
i Cercocebus_torquatus.k141_2422586        I 31 I 684
s Cercopithecus_ascanius.k141_1474622           9652  8 -     20001 gagt-ttg-----c
i Cercopithecus_ascanius.k141_1474622      I 59 C 0
s Cercopithecus_cephus.k141_2404415            10224  8 +     17637 GAGT-TTG-----C
i Cercopithecus_cephus.k141_2404415        I 59 C 0
s Cercopithecus_diana.k141_1557666             29942  8 +     50511 gggt-ttg-----c
i Cercopithecus_diana.k141_1557666         I 40 C 0
s Cercopithecus_hamlyni.k141_163049            10318  8 +     13474 ggat-ttt-----c
i Cercopithecus_hamlyni.k141_163049        I 40 I 215
s Cercopithecus_lowei.k141_784555               9883  8 -     18723 gagt-ttg-----c
i Cercopithecus_lowei.k141_784555          n 774 C 0
s Cercopithecus_albogularis.ctg28                 11340142  8 +  15093345 GAGT-TTG-----C
i Cercopithecus_albogularis.ctg28                I 59 C 0
s Cercopithecus_mona.ctg42                  15303202  8 +  20621893 TGGT-TTG-----C
i Cercopithecus_mona.ctg42                 I 33 C 0
s Cercopithecus_neglectus.k141_2030378          9570  8 -     11116 GAGT-TTG-----C
i Cercopithecus_neglectus.k141_2030378     n 31 C 0
s Cercopithecus_nictitans.k141_3162920          9260  8 +     18223 GAGT-TTG-----C
i Cercopithecus_nictitans.k141_3162920     I 59 I 84
s Cercopithecus_petaurista.k141_1586297        10275  8 +     12913 gagt-ttg-----c
i Cercopithecus_petaurista.k141_1586297    I 59 C 0
s Cercopithecus_pogonias.k141_715341           34234  8 +     35178 gagt-ttg-----c
i Cercopithecus_pogonias.k141_715341       n 31 C 0
s Cercopithecus_roloway.k141_2348395           13948  8 -     24522 gggt-ttg-----c
i Cercopithecus_roloway.k141_2348395       I 40 C 0
s Chlorocebus_aethiops.ctg56                12888944  8 +  17892486 TGGT-TTG-----C
i Chlorocebus_aethiops.ctg56               I 33 C 0
s Chlorocebus_pygerythrus.k141_1337201         11587  8 -     14715 GAGT-TTG-----C
i Chlorocebus_pygerythrus.k141_1337201     n 41 I 84
s Chlorocebus_sabaeus.CM001941.2            80962505  8 + 126035930 ggat-ttt-----c
i Chlorocebus_sabaeus.CM001941.2           I 33 n 41
s Colobus_angolensis.KN983594.1               500812 13 +   1039924 ATTT-TTACAGACC
i Colobus_angolensis.KN983594.1            n 740 I 4457
s Colobus_guereza.LG09                      83280391  8 - 145964134 gggt-ttg-----c
i Colobus_guereza.LG09                     N 0 N 0
s Colobus_polykomos.k141_1234023                7026  8 +     47276 gggt-ttg-----c
i Colobus_polykomos.k141_1234023           n 740 I 367
s Erythrocebus_patas.Contig40               15741755  8 +  21278523 TGGT-TTG-----C
i Erythrocebus_patas.Contig40              I 33 C 0
s Gorilla_beringei.k141_1529327                16186  8 +     19115 GGTT-TTA-----T
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg4240                   250  8 +     16837 ggat-ttt-----c
i Lophocebus_aterrimus.ctg4240             C 0 I 215
s Macaca_arctoides.k141_416589                  1685  8 -     26632 gagt-ttg-----c
i Macaca_arctoides.k141_416589             N 0 C 0
s Macaca_assamensis.Contig5                 34321668  8 -  60120075 tggt-ttg-----c
i Macaca_assamensis.Contig5                I 33 C 0
s Macaca_cyclopis.k119_383723                   2911  8 +      4334 GGAT-TTT-----C
i Macaca_cyclopis.k119_383723              n 775 I 417
s Macaca_fascicularis.k141_888912                691  8 -     45859 gggt-ttg-----c
i Macaca_fascicularis.k141_888912          C 0 I 260
s Macaca_fuscata.k119_959180                    4944  8 +     11606 ggtt-tta-----t
i Macaca_fuscata.k119_959180               n 31 C 0
s Macaca_leonina.k141_172241                    2179  8 -     27484 GAGT-TTG-----C
i Macaca_leonina.k141_172241               n 768 C 0
s Macaca_maura.k141_810534                       362  8 +      1298 GGAT-TTT-----C
i Macaca_maura.k141_810534                 n 775 I 33
s Macaca_mulatta.NC_041756.1                54487909  8 + 185288947 GGTT-TTA-----T
i Macaca_mulatta.NC_041756.1               N 0 C 0
s Macaca_nemestrina.KQ005114.1               9180075  8 -   9503891 TGGT-TTG-----C
i Macaca_nemestrina.KQ005114.1             I 33 C 0
s Macaca_nigra.k141_563100                      8258  8 +     15148 ggtt-tta-----t
i Macaca_nigra.k141_563100                 n 775 I 215
s Macaca_radiata.k141_501718                    1960  8 +     18260 tggt-ttg-----c
i Macaca_radiata.k141_501718               I 33 I 84
s Macaca_siberu.k141_204286                    10714  8 +     30583 gagt-ttg-----c
i Macaca_siberu.k141_204286                n 775 C 0
s Macaca_silenus.Contig84                     962374  8 +   9193133 gagt-ttg-----c
i Macaca_silenus.Contig84                  N 0 C 0
s Macaca_thibetana.k99_617125                   2287  8 +      3192 ggat-ttt-----c
i Macaca_thibetana.k99_617125              n 772 I 417
s Macaca_tonkeana.k141_828967                   3181  8 -     28304 ggat-ttt-----c
i Macaca_tonkeana.k141_828967              I 33 I 417
s Mandrillus_leucophaeus.scaffold228        12685686  8 -  20774610 GAGT-TTG-----C
i Mandrillus_leucophaeus.scaffold228       n 231 C 0
s Mandrillus_sphinx.Contig7                 14440556  8 +  51421834 TGGT-TTG-----C
i Mandrillus_sphinx.Contig7                C 0 C 0
s Miopithecus_ogouensis.k141_69083             10974  8 -     35729 GAGT-TTG-----C
i Miopithecus_ogouensis.k141_69083         I 26 C 0
s Nasalis_larvatus.k141_1176374                  119  8 +      8021 GGCT-TTA-----C
i Nasalis_larvatus.k141_1176374            N 0 N 0
s Pan_paniscus.KT153251.1                      11569  8 +     16605 GGGT-TCA-----C
i Pan_paniscus.KT153251.1                  I 2132 I 699
s Pan_troglodytes.CM009245.2                57354281  8 + 156046543 GGTT-TTA-----T
i Pan_troglodytes.CM009245.2               C 0 I 107
s Papio_anubis.CM001504.2                   71917087  8 + 124513186 GAGT-TTG-----C
i Papio_anubis.CM001504.2                  C 0 C 0
s Papio_cynocephalus.k141_3719535               4549  8 +      6274 GGAT-TTT-----C
i Papio_cynocephalus.k141_3719535          C 0 I 215
s Papio_hamadryas.Contig36                  14843205  8 +  22161365 TGGT-TTG-----C
i Papio_hamadryas.Contig36                 C 0 C 0
s Papio_kindae.k141_5429907                     1878  8 -     26587 gagt-ttg-----c
i Papio_kindae.k141_5429907                n 266 C 0
s Papio_papio.k141_3011620                     17479  8 +     19208 GGAT-TTT-----C
i Papio_papio.k141_3011620                 C 0 I 215
s Papio_ursinus.k141_2685680                   11736  8 +     15956 tggt-ttg-----c
i Papio_ursinus.k141_2685680               C 0 C 0
s Piliocolobus_badius.k141_2497507              6547  8 +     48083 GGGT-TTG-----C
i Piliocolobus_badius.k141_2497507         n 31 I 84
s Piliocolobus_gordonorum.k141_1087525         12865  8 -     21635 gggt-ttg-----c
i Piliocolobus_gordonorum.k141_1087525     n 31 n 31
s Piliocolobus_kirkii.k141_1278093             87013  8 -    144977 gggt-ttg-----c
i Piliocolobus_kirkii.k141_1278093         n 31 I 215
s Piliocolobus_tephrosceles.PDMG02000071.1  32994610  8 -  33944683 GGTT-TTA-----C
i Piliocolobus_tephrosceles.PDMG02000071.1 I 33 I 758
s Pongo_abelii.CM009269.2                  128598241  8 - 145408105 GGTT-TTA-----T
i Pongo_abelii.CM009269.2                  n 41 I 84
s Pongo_pygmaeus.ctg463                       317271  8 -    482523 GGTT-TTA-----T
i Pongo_pygmaeus.ctg463                    C 0 C 0
s Presbytis_comata.k141_1471558                 8057  8 -     44604 ggct-tca-----c
i Presbytis_comata.k141_1471558            I 33 n 33
s Presbytis_mitrata.k141_605190                25860  8 +     42743 GGTT-TCA-----C
i Presbytis_mitrata.k141_605190            n 484 C 0
s Pygathrix_cinerea.k141_1473548               19936  8 +     26068 gggt-ttg-----c
i Pygathrix_cinerea.k141_1473548           I 70 I 84
s Pygathrix_nigripes_b.ctg270                   2252416  8 +   3288884 gggt-ttg-----c
i Pygathrix_nigripes_b.ctg270                 n 3848 I 83
s Pygathrix_nigripes_a.k141_626429               10506  8 -     17932 GGGT-TTG-----C
i Pygathrix_nigripes_a.k141_626429           N 0 I 83
s Rhinopithecus_bieti.k119_488595               3558  8 +      6941 GGGT-TTG-----C
i Rhinopithecus_bieti.k119_488595          n 256 I 83
s Rhinopithecus_roxellana.NC_044555.1       47662297  8 - 154578354 GGGT-TTG-----C
i Rhinopithecus_roxellana.NC_044555.1      n 256 I 83
s Rhinopithecus_strykeri.ctg20              25379539  8 +  26372126 GGGT-TTG-----C
i Rhinopithecus_strykeri.ctg20             n 801 I 83
s Semnopithecus_entellus.k141_439698            2511  8 -     12026 GGGT-TTG-----C
i Semnopithecus_entellus.k141_439698       n 8 I 84
s Semnopithecus_hypoleucos.k141_296292         29162  8 -     38684 gggt-ttg-----c
i Semnopithecus_hypoleucos.k141_296292     n 8 I 84
s Semnopithecus_johnii.k141_209824             11691  8 +     14026 gggt-ttg-----c
i Semnopithecus_johnii.k141_209824         n 8 I 84
s Semnopithecus_priam.k141_254402              10709  8 -     20235 GGGT-TTG-----C
i Semnopithecus_priam.k141_254402          n 8 I 84
s Semnopithecus_schistaceus.k141_1398757        6738  8 -     16253 gggt-ttg-----c
i Semnopithecus_schistaceus.k141_1398757   n 8 I 84
s Semnopithecus_vetulus.k141_357222            31242  8 +     37979 GGGT-TTG-----C
i Semnopithecus_vetulus.k141_357222        n 8 I 84
s Symphalangus_syndactylus.tarseq_159        7806880  8 -   7865082 CAGT-CTA-----T
i Symphalangus_syndactylus.tarseq_159      I 32 I 343
s Theropithecus_gelada.CM009952.1          182322192  8 - 183260707 GGTT-TTA-----T
i Theropithecus_gelada.CM009952.1          n 41 I 215
s Trachypithecus_auratus.k141_1401410           4204  8 +     12265 gggt-ttg-----c
i Trachypithecus_auratus.k141_1401410      n 7 n 7
s Trachypithecus_crepusculus.k141_1287273      11666  8 -     21237 gggt-ttg-----c
i Trachypithecus_crepusculus.k141_1287273  n 0 I 84
s Trachypithecus_cristatus.k141_447937         13725  8 +     32678 gggt-ttg-----c
i Trachypithecus_cristatus.k141_447937     n 74 n 74
s Trachypithecus_francoisi.k141_971175         11574  8 +     23988 gggt-ttg-----c
i Trachypithecus_francoisi.k141_971175     n 0 I 367
s Trachypithecus_geei.k141_963886              11617  8 +     21425 GGGT-TTG-----C
i Trachypithecus_geei.k141_963886          N 0 I 84
s Trachypithecus_germaini.k141_871401          11726  8 -     17992 GGGT-TTG-----C
i Trachypithecus_germaini.k141_871401      n 7 n 7
s Trachypithecus_hatinhensis.k141_747314        3549  8 -     13071 GGGT-TTG-----C
i Trachypithecus_hatinhensis.k141_747314   n 256 n 256
s Trachypithecus_laotum.k141_1230304           18023  8 +     27545 GGGT-TTG-----C
i Trachypithecus_laotum.k141_1230304       n 41 I 84
s Trachypithecus_leucocephalus.k141_359357      5362  8 +     15007 gggt-ttg-----c
i Trachypithecus_leucocephalus.k141_359357 I 70 I 84
s Trachypithecus_melamera.k141_782462           3898  8 -      4373 gggt-ttg-----c
i Trachypithecus_melamera.k141_782462      n 767 I 84
s Trachypithecus_obscurus.k141_932129          11642  8 -     19365 GGGT-TTG-----C
i Trachypithecus_obscurus.k141_932129      n 74 I 84
s Trachypithecus_phayrei.ctg36              23858587  8 +  24713378 GGGT-TTG-----C
i Trachypithecus_phayrei.ctg36             n 0 I 84
s Trachypithecus_pileatus.k141_1977800         11677  8 -     42176 gggt-ttg-----c
i Trachypithecus_pileatus.k141_1977800     n 74 I 84

a score=0.000000
s hg38.chrM                                    12132 33 +     16569 CTCT--------TGTA---AATA----T-AGTTT-AACC-AAAA-------------CA----TCAGA
s Allenopithecus_nigroviridis.k141_3364170     10115 33 -     35425 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Allenopithecus_nigroviridis.k141_3364170 C 0 C 0
s Allochrocebus_lhoesti.k141_1513956            7718 33 +     44761 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-AAAA-------------CA----TTAGA
i Allochrocebus_lhoesti.k141_1513956       C 0 I 51
s Allochrocebus_preussi.k141_1094977            3327 42 +     20147 TCCC--------TGTA---CATA----C-----T-TATC-ACAACACAACAAGGAACAC----TTACA
i Allochrocebus_preussi.k141_1094977       n 84 I 332
s Allochrocebus_solatus.k141_2644035            6138 42 -     24567 tccc--------tgta---cata----c-----t-tatc-acaacacaacaaggaacac----ttaca
i Allochrocebus_solatus.k141_2644035       n 84 I 331
s Cercocebus_atys.KQ010367.1                11407824 33 -  11668111 ACCC--------TGTA---AATA----T-AGTTT-AATC-AAAA-------------CA----TTAGA
i Cercocebus_atys.KQ010367.1               C 0 I 182
s Cercocebus_chrysogaster.k141_1945715         88834 33 -    105757 accc--------tgta---aata----t-agttt-aatc-aaaa-------------ca----ttaga
i Cercocebus_chrysogaster.k141_1945715     C 0 I 182
s Cercocebus_lunulatus.k141_5051340             1843 33 +     26539 ATGC--------TGTA---GCTA----T-AGTTT-AACC-Aaaa-------------ta----ttaga
i Cercocebus_lunulatus.k141_5051340        C 0 C 0
s Cercocebus_torquatus.k141_301629              6927 33 -     11288 atgc--------tgta---gcta----t-agttt-accc-aaaa-------------ca----ttaga
i Cercocebus_torquatus.k141_301629         I 8 I 256
s Cercopithecus_ascanius.k141_1474622           9660 33 -     20001 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Cercopithecus_ascanius.k141_1474622      C 0 I 51
s Cercopithecus_cephus.k141_2404415            10232 33 +     17637 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Cercopithecus_cephus.k141_2404415        C 0 I 51
s Cercopithecus_diana.k141_1557666             29950 33 +     50511 atac--------tgta---aata----t-agctt-aacc-aaaa-------------ca----ttaga
i Cercopithecus_diana.k141_1557666         C 0 I 226
s Cercopithecus_hamlyni.k141_1438795            9523 33 -     20535 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Cercopithecus_hamlyni.k141_1438795       n 215 I 74
s Cercopithecus_lowei.k141_784555               9891 33 -     18723 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Cercopithecus_lowei.k141_784555          C 0 C 0
s Cercopithecus_albogularis.ctg28                 11340150 33 +  15093345 ATGC--------TGTA---GCTA----T-AGTTT-AACC-Aaaa-------------ta----ttaga
i Cercopithecus_albogularis.ctg28                C 0 C 0
s Cercopithecus_mona.ctg42                  15303210 33 +  20621893 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-AAAA-------------CA----TTAGA
i Cercopithecus_mona.ctg42                 C 0 I 51
s Cercopithecus_neglectus.k141_2030378          9578 33 -     11116 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Cercopithecus_neglectus.k141_2030378     C 0 I 51
s Cercopithecus_nictitans.k141_2584572          3249 33 +      9209 ATGC--------TGTA---AAGA----T-ACTTT-AATC-AAAA-------------CA----TTAGA
i Cercopithecus_nictitans.k141_2584572     n 84 n 84
s Cercopithecus_petaurista.k141_1586297        10283 33 +     12913 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Cercopithecus_petaurista.k141_1586297    C 0 I 51
s Cercopithecus_pogonias.k141_715341           34242 33 +     35178 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Cercopithecus_pogonias.k141_715341       C 0 I 51
s Cercopithecus_roloway.k141_2348395           13956 33 -     24522 atac--------tgta---aata----t-agttt-aacc-aaaa-------------ca----ttaga
i Cercopithecus_roloway.k141_2348395       C 0 I 226
s Chlorocebus_aethiops.ctg56                12888952 33 +  17892486 ATGC--------CGTA---GCTA----T-AGTtt-aCCC-AAAA-------------CA----TTAGA
i Chlorocebus_aethiops.ctg56               C 0 I 51
s Chlorocebus_pygerythrus.k141_827286           1745 42 +     10554 TCCC--------TGTA---CATA----C-----T-TATC-ACAACACAACAAGGAACAC----TTACA
i Chlorocebus_pygerythrus.k141_827286      n 84 n 84
s Chlorocebus_sabaeus.CM001941.2            72798090 33 + 126035930 atgc--------tgta---gcta----c-agttt-aacc-aaaa-------------ta----ttaga
i Chlorocebus_sabaeus.CM001941.2           n 41 I 51
s Colobus_angolensis.KN980262.1              5337057 33 -   7104014 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Colobus_angolensis.KN980262.1            n 4457 I 74
s Colobus_guereza.LG01                      35866126 33 - 200372422 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-AAAA-------------CA----TTAGA
i Colobus_guereza.LG01                     N 0 N 0
s Colobus_polykomos.k141_1498685                3197 33 -      4776 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-AAAA-------------CA----TTAGA
i Colobus_polykomos.k141_1498685           I 78 I 51
s Erythrocebus_patas.Contig40               15741763 33 +  21278523 ATGC--------TGTA---GCTA----T-AGTtt-accc-aaaa-------------ca----ttagA
i Erythrocebus_patas.Contig40              C 0 I 51
s Gorilla_beringei.k141_1529327                16194 33 +     19115 ACCC--------TGTA---AGta----t-agttt-aatc-aaaa-------------ca----ttaga
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg101                4013611 33 +   8526212 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Lophocebus_aterrimus.ctg101              n 215 C 0
s Macaca_arctoides.k141_416589                  1693 33 -     26632 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Macaca_arctoides.k141_416589             C 0 C 0
s Macaca_assamensis.Contig5                 34321676 33 -  60120075 atgc--------tgta---gcta----t-agttt-accc-aaaa-------------ca----ttaga
i Macaca_assamensis.Contig5                C 0 I 51
s Macaca_cyclopis.k119_512377                   5208 33 +     21625 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-AAAA-------------CA----TTAGA
i Macaca_cyclopis.k119_512377              I 41 I 51
s Macaca_fascicularis.k141_303218              18249 33 +     58069 accc--------tgta---aata----t-agttt-aatc-aaaa-------------ca----ttaga
i Macaca_fascicularis.k141_303218          n 260 I 191
s Macaca_fuscata.k119_959180                    4952 33 +     11606 accc--------tgta---aata----t-agttt-aatc-aaaa-------------ca----ttaga
i Macaca_fuscata.k119_959180               C 0 I 182
s Macaca_leonina.k141_172241                    2187 33 -     27484 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Macaca_leonina.k141_172241               C 0 C 0
s Macaca_maura.k141_1765751                     9776 33 -     48667 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Macaca_maura.k141_1765751                n 33 I 50
s Macaca_mulatta.NC_041756.1                54487917 33 + 185288947 ACCC--------TGTA---AATA----T-AGTTT-AATC-AAAA-------------CA----TTAGA
i Macaca_mulatta.NC_041756.1               C 0 I 175
s Macaca_nemestrina.KQ005114.1               9180083 33 -   9503891 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-AAAA-------------CA----TTAGA
i Macaca_nemestrina.KQ005114.1             C 0 I 51
s Macaca_nigra.k141_1991806                     5208 33 +     21490 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-AAAA-------------CA----TTAGA
i Macaca_nigra.k141_1991806                I 78 I 190
s Macaca_radiata.k141_2031987                   1755 33 +     59341 ATGC--------TGTA---GCTA----T-AGTtt-aacc-aaaa-------------ta----ttaga
i Macaca_radiata.k141_2031987              n 84 C 0
s Macaca_siberu.k141_204286                    10722 33 +     30583 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Macaca_siberu.k141_204286                C 0 C 0
s Macaca_silenus.Contig84                     962382 33 +   9193133 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Macaca_silenus.Contig84                  C 0 C 0
s Macaca_thibetana.k99_179800                   3874 33 +     12326 ACCC--------TGTA---AATA----T-AGTTT-AATC-AAAA-------------CA----TTAGA
i Macaca_thibetana.k99_179800              n 417 I 182
s Macaca_tonkeana.k141_305781                  16600 33 +     94123 accc--------tgta---aata----t-agttt-aatc-aaaa-------------ca----ttaga
i Macaca_tonkeana.k141_305781              n 417 I 182
s Mandrillus_leucophaeus.scaffold228        12685694 33 -  20774610 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Mandrillus_leucophaeus.scaffold228       C 0 C 0
s Mandrillus_sphinx.Contig7                 14440564 33 +  51421834 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-AAAA-------------CA----TTAGA
i Mandrillus_sphinx.Contig7                C 0 I 51
s Miopithecus_ogouensis.k141_69083             10982 34 -     35729 ATGC--------TGTA---GCTA----TAagttt-aacc-aaaa-------------ta----ttaga
i Miopithecus_ogouensis.k141_69083         C 0 I 51
s Nasalis_larvatus.k141_1109213                 5247 33 -     15432 accc--------tgta---aata----t-agttt-aatc-aaaa-------------ca----ttaga
i Nasalis_larvatus.k141_1109213            N 0 I 182
s Pan_paniscus.CM003392.1                  115197852 33 - 138149186 CTCC--------TGTA---AATA----T-AGTTT-AACC-AAAA-------------CA----TCAGA
i Pan_paniscus.CM003392.1                  I 41 I 182
s Pan_troglodytes.CM009247.2                88039816 33 - 110513671 ctcc--------tgta---aata----t-agttt-aacc-aaaa-------------ca----tcaga
i Pan_troglodytes.CM009247.2               I 41 I 182
s Papio_anubis.CM001504.2                   71917095 33 + 124513186 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Papio_anubis.CM001504.2                  C 0 C 0
s Papio_cynocephalus.k141_3949568               6792 33 -      8346 accc--------tgta---aata----t-agttt-aatc-aaaa-------------ca----ttaga
i Papio_cynocephalus.k141_3949568          n 215 I 191
s Papio_hamadryas.Contig36                  14843213 33 +  22161365 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-Aaaa-------------ca----ttaga
i Papio_hamadryas.Contig36                 C 0 I 51
s Papio_kindae.k141_5429907                     1886 33 -     26587 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Papio_kindae.k141_5429907                C 0 C 0
s Papio_papio.k141_2436119                     34475 33 -     56783 atgc--------tgta---gcta----t-agttt-accc-aaaa-------------ca----ttaga
i Papio_papio.k141_2436119                 I 78 I 51
s Papio_ursinus.k141_2685680                   11744 33 +     15956 atgc--------tgta---gcta----t-agttt-accc-aaaa-------------ca----ttaga
i Papio_ursinus.k141_2685680               C 0 I 51
s Piliocolobus_badius.k141_1515087              4198 33 -     29604 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Piliocolobus_badius.k141_1515087         n 84 I 74
s Piliocolobus_gordonorum.k141_345746           1941 33 +     63902 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Piliocolobus_gordonorum.k141_345746      n 31 I 74
s Piliocolobus_kirkii.k141_72784                9810 33 -     35819 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Piliocolobus_kirkii.k141_72784           n 215 I 74
s Piliocolobus_tephrosceles.PDMG02000249.1   5372952 33 -  11423478 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Piliocolobus_tephrosceles.PDMG02000249.1 n 758 C 0
s Pongo_abelii.KZ622949.1                    3632147 33 +   3740455 accc--------tgta---aata----t-agttt-aatc-aaag-------------ca----ttaga
i Pongo_abelii.KZ622949.1                  n 84 I 253
s Pongo_pygmaeus.ctg463                       317279 33 -    482523 ACCC--------TGTA---AATA----T-AGTTT-AATC-AaaG-------------CA----TTAGA
i Pongo_pygmaeus.ctg463                    C 0 C 0
s Presbytis_comata.k141_1478785                  596 34 -      3993 CCTT--------TGTA---AATA----T-AGTtt-aaccaaaaa-------------ca----ttaga
i Presbytis_comata.k141_1478785            n 33 I 664
s Presbytis_mitrata.k141_605190                25868 34 +     42743 TCCC--------TGTA---AATA----T-AGTTT-AACCAaaAA-------------CA----TTAGA
i Presbytis_mitrata.k141_605190            C 0 I 572
s Pygathrix_cinerea.k141_180880                 2685 33 -      3181 accc--------tgta---aata----t-agttt-aatc-aaaa-------------ca----ttaga
i Pygathrix_cinerea.k141_180880            n 84 n 84
s Pygathrix_nigripes_b.ctg5                    24984050 33 -  59994118 atgc--------tgta---gcta----t-agttt-accc-aaaa-------------ca----ttaga
i Pygathrix_nigripes_b.ctg5                   I 78 I 323
s Pygathrix_nigripes_a.k141_991715                2474 33 +      2966 accc--------tgta---aata----t-agttt-aatc-aaaa-------------ca----ttaga
i Pygathrix_nigripes_a.k141_991715           n 83 n 83
s Rhinopithecus_bieti.k119_429275                616 33 +      2923 ACCC--------TGTA---aata----t-agttt-aatc-aaaa-------------ca----ttaga
i Rhinopithecus_bieti.k119_429275          n 83 I 191
s Rhinopithecus_roxellana.NC_044550.1      134183173 33 - 195417433 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-Aaaa-------------ca----ttaga
i Rhinopithecus_roxellana.NC_044550.1      I 78 I 256
s Rhinopithecus_strykeri.ctg107               988645 33 +   9417851 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Rhinopithecus_strykeri.ctg107            n 83 C 0
s Semnopithecus_entellus.k141_463041           10352 33 -     42431 ATGC--------TGTA---TTTA----T-AGTTT-AACC-AAAA-------------CA----TTAGA
i Semnopithecus_entellus.k141_463041       I 8 C 0
s Semnopithecus_hypoleucos.k141_2314638          765 33 -      3947 ATGC--------TGTA---TTTA----T-AGTTT-AACC-aaaa-------------ca----ttaga
i Semnopithecus_hypoleucos.k141_2314638    I 8 C 0
s Semnopithecus_johnii.k141_1161280              704 33 -     11504 atgc--------tgta---ttta----t-agttt-aacc-aaaa-------------ca----ttaga
i Semnopithecus_johnii.k141_1161280        I 8 C 0
s Semnopithecus_priam.k141_842164                832 33 -      4001 atgc--------tgta---ttta----t-agttT-AACC-AAAA-------------CA----Ttaga
i Semnopithecus_priam.k141_842164          I 8 C 0
s Semnopithecus_schistaceus.k141_1231873         888 33 +      4128 atgc--------tgta---ttta----t-agttt-aacc-aaaa-------------ca----ttaga
i Semnopithecus_schistaceus.k141_1231873   I 8 C 0
s Semnopithecus_vetulus.k141_1248868             851 33 +     26236 atgc--------tgta---ttta----t-agttt-aacc-aaaa-------------ca----ttaga
i Semnopithecus_vetulus.k141_1248868       I 8 C 0
s Symphalangus_syndactylus.tarseq_341          93190 33 +    759515 accc--------taca---aata----c-agttt-aatc-aaaa-------------ca----ttaga
i Symphalangus_syndactylus.tarseq_341      I 150 C 0
s Theropithecus_gelada.CM009964.1           73630506 33 + 126097711 ATGC--------TGTA---ACTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Theropithecus_gelada.CM009964.1          I 38 I 74
s Trachypithecus_auratus.k141_1075286           4231 33 -      5743 atgc--------tgta---gcta----t-agttt-accc-aaaa-------------ca----ttaga
i Trachypithecus_auratus.k141_1075286      I 78 I 51
s Trachypithecus_crepusculus.k141_553635        9898 33 -     49581 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Trachypithecus_crepusculus.k141_553635   n 84 C 0
s Trachypithecus_cristatus.k141_815529          4270 33 -      5857 atgc--------tgta---gcta----t-agttt-accc-aaaa-------------ca----ttaga
i Trachypithecus_cristatus.k141_815529     I 78 I 51
s Trachypithecus_francoisi.k141_162516          9566 33 -     27459 atgc--------tgta---gcta----t-agttt-aacc-aaaa-------------ta----ttaga
i Trachypithecus_francoisi.k141_162516     n 367 C 0
s Trachypithecus_geei.k141_1754164             17917 33 +     44201 ctcc--------tgta---aata----t-agttt-aacc-aaaa-------------ca----ttaga
i Trachypithecus_geei.k141_1754164         n 84 n 84
s Trachypithecus_germaini.k141_53511            9524 33 +     34020 ATGC--------TGTA---GCTA----T-AGTTT-AACC-AAAA-------------TA----TTAGA
i Trachypithecus_germaini.k141_53511       n 7 C 0
s Trachypithecus_hatinhensis.k141_37173         4116 33 -      5703 atgc--------tgta---gcta----t-agttt-accc-aaaa-------------ca----ttaga
i Trachypithecus_hatinhensis.k141_37173    I 78 I 51
s Trachypithecus_laotum.k141_68479              9527 33 -     27453 ATGC--------TGTA---GCTA----T-AGTTT-AACC-aaaa-------------ta----ttaga
i Trachypithecus_laotum.k141_68479         I 38 I 74
s Trachypithecus_leucocephalus.k141_45550       4117 33 +     21951 atgc--------tgta---gcta----t-agttt-accc-aaaa-------------ca----ttaga
i Trachypithecus_leucocephalus.k141_45550  I 38 I 256
s Trachypithecus_melamera.k141_524806           4361 33 +      5657 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-AAAA-------------CA----TTAGA
i Trachypithecus_melamera.k141_524806      I 78 I 190
s Trachypithecus_obscurus.k141_114580           4271 33 +      5872 atgc--------tgta---gcta----t-agttt-accc-aaaa-------------ca----ttaga
i Trachypithecus_obscurus.k141_114580      I 78 I 190
s Trachypithecus_phayrei.ctg1               24764766 33 -  59489887 ATGC--------TGTA---GCTA----T-AGTTT-ACCC-AAAA-------------CA----TTAGA
i Trachypithecus_phayrei.ctg1              I 78 I 182
s Trachypithecus_pileatus.k141_2432600          7931 33 -      8234 ctcc--------tgta---aata----t-agttt-aacc-aaaa-------------ca----ttaga
i Trachypithecus_pileatus.k141_2432600     n 84 n 84

a score=0.000000
s hg38.chrM                                    12165 51 +     16569 TTGTGAAT--------CTGACAACAGAGGCT-TA---CGA---CCCCTTATTTACCGAGAA--------AGCTC
s Allenopithecus_nigroviridis.k141_3364170     10148 51 -     35425 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------cca-gaa-agtat
i Allenopithecus_nigroviridis.k141_3364170 C 0 C 0
s Allochrocebus_lhoesti.k141_1288440            2168 51 -     10247 ttgtgaat--------ctaatcatagaagcc-ta---cta---cttcttatttac------cga-gaa-agctc
i Allochrocebus_lhoesti.k141_1288440       I 41 I 639
s Allochrocebus_preussi.k141_3734564            9513 51 -     19198 ttgtgaac--------ctaataagaaaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Allochrocebus_preussi.k141_3734564       n 332 I 23
s Allochrocebus_solatus.k141_1664502            6447 51 +     14510 ttgtgagt--------ctaaccataggagcc-ta---cta---cttcttatttac------cga-gaa-agcta
i Allochrocebus_solatus.k141_1664502       I 41 I 610
s Cercocebus_atys.KQ012497.1                13121098 51 -  15015882 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Cercocebus_atys.KQ012497.1               n 182 I 23
s Cercocebus_chrysogaster.k141_129667          30460 51 -     34785 ttgtggat--------ctaacaatagaagcc-tg---caa---cttcttacctac------caa-gaa-agtat
i Cercocebus_chrysogaster.k141_129667      I 41 C 0
s Cercocebus_lunulatus.k141_5051340             1876 51 +     26539 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Cercocebus_lunulatus.k141_5051340        C 0 I 23
s Cercocebus_torquatus.k141_19251              12141 51 -     37166 TTGTGAAC--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Cercocebus_torquatus.k141_19251          n 256 C 0
s Cercopithecus_ascanius.k141_4105459            202 51 -      9485 ttatgaat--------ctaactatagaagcc-ta---cta---catcttatttac------tga-gaa-agttt
i Cercopithecus_ascanius.k141_4105459      I 31 I 616
s Cercopithecus_cephus.k141_2148804              201 51 -     15429 TTATGAAT--------CTAACTATAGAAGCC-TA---CTA---CATCTTATTTAC------TGA-GAA-AGTTT
i Cercopithecus_cephus.k141_2148804        I 31 I 675
s Cercopithecus_diana.k141_1147129             14720 51 +     57904 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Cercopithecus_diana.k141_1147129         n 226 I 23
s Cercopithecus_hamlyni.k141_285549            23075 51 -     38690 TTATGAAT--------CTAACTATAGAAGCC-TA---CTA---CATCTTATTTAC------Tga-gaa-agttt
i Cercopithecus_hamlyni.k141_285549        I 31 I 692
s Cercopithecus_lowei.k141_784555               9924 51 -     18723 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------cca-gaa-agtat
i Cercopithecus_lowei.k141_784555          C 0 I 23
s Cercopithecus_albogularis.ctg28                 11340183 51 +  15093345 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Cercopithecus_albogularis.ctg28                C 0 C 0
s Cercopithecus_mona.ctg49                  18626885 51 +  18760735 ttatgaat--------ctaactatagaagcc-ta---cta---catcttatttac------tga-gaa-agttt
i Cercopithecus_mona.ctg49                 I 31 I 615
s Cercopithecus_neglectus.k141_790885           1938 51 -      7576 ttatgaat--------ctaactatagaagcc-ta---cta---catcttatttac------tga-gaa-agttt
i Cercopithecus_neglectus.k141_790885      I 31 I 692
s Cercopithecus_nictitans.k141_2579170          1025 51 -     21268 ttatgaat--------ctaactatagaagcc-ta---cta---catcttatttac------tga-gaa-agttt
i Cercopithecus_nictitans.k141_2579170     I 31 n 84
s Cercopithecus_petaurista.k141_2710281         6063 51 +     15186 ttatgaat--------ctaactatagaagcc-ta---cta---catcttatttac------tga-gaa-agttt
i Cercopithecus_petaurista.k141_2710281    I 31 I 692
s Cercopithecus_pogonias.k141_1251620           2884 51 +      6713 TTATGAAT--------CTAACTATAGAAGCC-TA---CTA---CATCTTATTTAC------TGA-GAA-AGTTT
i Cercopithecus_pogonias.k141_1251620      I 31 I 691
s Cercopithecus_roloway.k141_3125301            5007 51 -      7894 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Cercopithecus_roloway.k141_3125301       n 226 I 269
s Chlorocebus_aethiops.ctg60                 8812649 51 -   8865816 ttgtgaat--------ctaatCATAGAGGCC-TA---Cca---cttcttATTTAC------CGA-GAA-AGCTA
i Chlorocebus_aethiops.ctg60               n 51 I 706
s Chlorocebus_pygerythrus.k141_1433182          7413 51 -     17062 ttgtgagt--------ctaaccatagaagcc-ta---cta---cttcttatttAC------CGa-gaa-agcta
i Chlorocebus_pygerythrus.k141_1433182     I 41 I 671
s Chlorocebus_sabaeus.CM001949.2            87034384 51 - 125710982 ttgtgaat--------ctaatcatagaagcc-ta---cta---cttcttatttac------cga-gaa-agctt
i Chlorocebus_sabaeus.CM001949.2           I 41 I 639
s Colobus_angolensis.KN983687.1               180286 51 +   1683379 TTGTGAAT--------CTAATTATAGAAGCC-CA---CTA---CTTCTTATTTAC------CGA-GAA-AGCTT
i Colobus_angolensis.KN983687.1            n 74 n 74
s Colobus_guereza.LG01                     131583130 51 - 200372422 TTGTgaat--------ctaactatagaagcc-ta---caa---cttcttatttac------tga-gaa-agttc
i Colobus_guereza.LG01                     N 0 N 0
s Colobus_polykomos.k141_346247                10324 51 -     17284 TTGTGAac--------ctAATAAGAGAAGCC-TG---CAA---CTTCTTATCTAC------CAA-GAA-AGTAT
i Colobus_polykomos.k141_346247            n 51 I 23
s Erythrocebus_patas.Contig3274                 6688 51 -     15413 ttatgaat--------ctaactatagaagcc-ta---cta---catcttatttac------tga-gaa-agttt
i Erythrocebus_patas.Contig3274            I 71 I 688
s Gorilla_beringei.k141_1529327                16227 51 +     19115 ttgtgggt--------ttagtaatagaagtc-tg---caa---tttcttatttactgagaa--------agtat
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg101                4013644 51 +   8526212 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Lophocebus_aterrimus.ctg101              C 0 C 0
s Macaca_arctoides.k141_416589                  1726 51 -     26632 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Macaca_arctoides.k141_416589             C 0 C 0
s Macaca_assamensis.Contig57                14641125 51 -  14663190 TTATGAAT--------CTAACTATAGAAGCC-TA---CTA---CTTCTTATTTAC------CGA-GAA-AATTC
i Macaca_assamensis.Contig57               I 31 n 51
s Macaca_cyclopis.k119_883431                   1653 51 -     12002 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Macaca_cyclopis.k119_883431              n 51 I 23
s Macaca_fascicularis.k141_751310               1448 51 -     31541 TTATGAAT--------CTAATTATAGAAGCC-TA---ATA---CTTCTTATTTAC------TGA-GAA-AGTTT
i Macaca_fascicularis.k141_751310          I 71 I 694
s Macaca_fuscata.k119_1151878                   1640 51 +     14929 ttatgaat--------ctaactatagaagcc-ta---ata---cttcttatttac------tga-gaa-agttt
i Macaca_fuscata.k119_1151878              I 31 I 694
s Macaca_leonina.k141_172241                    2220 51 -     27484 TTGTGAAC--------CTAATAAGAGAAGCC-TG---CAA---CTTCTTATCTAC------CAA-GAA-AGTAT
i Macaca_leonina.k141_172241               C 0 I 23
s Macaca_maura.k141_810534                       403 51 +      1298 CTGTgaat--------ctAATAATAGAAGCC-TT---CAA---CCTCTTATCTGC------c-atgaa-agtac
i Macaca_maura.k141_810534                 I 33 I 332
s Macaca_mulatta.NC_041767.1                74734258 51 + 128056306 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Macaca_mulatta.NC_041767.1               n 175 I 23
s Macaca_nemestrina.KQ006940.1               9376065 51 -  10413719 ttatgtgt--------ctagtaatagaagtc-tg---caa---cttcttatttac------tga-gaa-agtat
i Macaca_nemestrina.KQ006940.1             n 51 I 131
s Macaca_nigra.k141_580096                     31413 51 -     56270 TTGTGAAC--------CTAATAAGAGAAGCC-TG---CAA---CTTCTTATCTAC------CAA-GAA-AGTAT
i Macaca_nigra.k141_580096                 n 190 C 0
s Macaca_radiata.k141_2031987                   1788 51 +     59341 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Macaca_radiata.k141_2031987              C 0 I 23
s Macaca_siberu.k141_204286                    10755 51 +     30583 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Macaca_siberu.k141_204286                C 0 C 0
s Macaca_silenus.Contig84                     962415 51 +   9193133 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Macaca_silenus.Contig84                  C 0 I 23
s Macaca_thibetana.k99_674455                   1650 51 -      5098 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Macaca_thibetana.k99_674455              n 182 C 0
s Macaca_tonkeana.k141_1979834                  1775 51 +     26550 TTGTGAAC--------CTAATAAGAGAAGCC-TG---CAA---CTTCTTATCTAC------CAA-GAA-AGTAT
i Macaca_tonkeana.k141_1979834             n 182 C 0
s Mandrillus_leucophaeus.scaffold228        12685727 51 -  20774610 TTGTGAAC--------CTAATAAGAGAAGCC-TG---CAA---CTTCTTATCTAC------CAA-GAA-AGTAT
i Mandrillus_leucophaeus.scaffold228       C 0 C 0
s Mandrillus_sphinx.Contig93                  913467 51 -   9270810 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Mandrillus_sphinx.Contig93               n 51 I 23
s Miopithecus_ogouensis.k141_744758             1818 51 +     16671 TTCTGAAT--------CTAACTATAGAAGCC-TA---CTA---CATCTTATTTAC------TGA-GAA-AGTTT
i Miopithecus_ogouensis.k141_744758        I 31 I 692
s Nasalis_larvatus.k141_772271                  6510 51 +     15527 ctgtgaat--------ctaaccatagaagcc-ca---cta---cttcttatttac------cga-gaa-agTTC
i Nasalis_larvatus.k141_772271             n 182 I 536
s Pan_paniscus.CM003385.1                  131191086 51 + 247869975 ttgtggat--------ctaataatagaagtc-tg---ctg---cttcttatttaccaagaa--------agtgt
i Pan_paniscus.CM003385.1                  I 81 I 132
s Pan_troglodytes.CM009240.2               110736683 51 - 128755405 ttgtggat--------ctaataatagaagtc-tg---ctg---cttcttatttaccaagaa--------agtgt
i Pan_troglodytes.CM009240.2               I 81 C 0
s Papio_anubis.CM001504.2                   71917128 51 + 124513186 TTGTGAAC--------CTAATAAGAGAAGCC-TG---CAA---CTTCTTATCTAC------TAA-GAA-AGTAT
i Papio_anubis.CM001504.2                  C 0 I 23
s Papio_cynocephalus.k141_2026657               9883 51 +     45296 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Papio_cynocephalus.k141_2026657          n 191 C 0
s Papio_hamadryas.Contig48                  11401825 51 +  17843046 TTGTGAAC--------CTAATAAGAGAAGCC-TG---CAA---CTTCTTatctac------caa-gaa-agtat
i Papio_hamadryas.Contig48                 n 51 I 23
s Papio_kindae.k141_5429907                     1919 51 -     26587 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Papio_kindae.k141_5429907                C 0 C 0
s Papio_papio.k141_1575386                      9196 51 +     19082 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Papio_papio.k141_1575386                 n 51 I 23
s Papio_ursinus.k141_1596938                    9512 51 -     18940 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Papio_ursinus.k141_1596938               n 51 I 23
s Piliocolobus_badius.k141_610607                934 51 -      7187 TTGTGAAT--------CTAACTATAGAAGCC-TA---CTA---CTTCTTATTTAC------TGA-GAA-AGTTC
i Piliocolobus_badius.k141_610607          I 31 n 74
s Piliocolobus_gordonorum.k141_668257           2449 51 -     15642 ttgtgaat--------ctaactatagaagcc-ta---cta---cttcttattcac------tga-gaa-agttc
i Piliocolobus_gordonorum.k141_668257      I 31 I 533
s Piliocolobus_kirkii.k141_1218120              7017 51 +     20242 ttgtgaat--------ctaactatagaagcc-ta---cta---cttcttattcac------tga-gaa-agttc
i Piliocolobus_kirkii.k141_1218120         I 31 I 533
s Piliocolobus_tephrosceles.PDMG02000249.1   5372985 51 -  11423478 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Piliocolobus_tephrosceles.PDMG02000249.1 C 0 I 23
s Pongo_abelii.CM009264.2                     448623 51 + 129937803 ttatggat--------ctaatagtagaagtc-tg---ctg---cttcttatttaccaagaa--------agtgt
i Pongo_abelii.CM009264.2                  I 41 I 131
s Pongo_pygmaeus.ctg463                       317312 51 -    482523 TTGTGGGT--------CTAATAATACAagtc-tg---caa---ctttttatttactgagaa--------agtat
i Pongo_pygmaeus.ctg463                    C 0 I 131
s Presbytis_comata.k141_1398569                  995 51 -      7971 ttgtgaat--------ctaactatagaagcc-ta---cta---cttcttatttac------tga-gaa-agttc
i Presbytis_comata.k141_1398569            n 664 n 664
s Presbytis_mitrata.k141_812075                  861 51 +      6699 TTGTGAAT--------CTAACTATAGAAGCC-TA---CTA---CTTCTTATTTAC------TGA-GAA-AGTTC
i Presbytis_mitrata.k141_812075            n 572 n 572
s Pygathrix_cinerea.k141_1655762               10630 51 +     56938 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Pygathrix_cinerea.k141_1655762           n 84 I 172
s Pygathrix_nigripes_b.ctg275                   1005573 51 -   1164381 ctgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Pygathrix_nigripes_b.ctg275                 n 323 I 23
s Pygathrix_nigripes_a.k141_1226842               8615 51 -     18851 ctgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Pygathrix_nigripes_a.k141_1226842          n 83 I 23
s Rhinopithecus_bieti.k119_193647               1804 51 -     21440 ttgtgaac--------ctaataagagaagcc-tg---caa---cttcttatctac------caa-gaa-agtat
i Rhinopithecus_bieti.k119_193647          n 191 I 23
s Rhinopithecus_roxellana.NC_044563.1       80415724 51 - 130852392 ttgtgaac--------ctaataagagaaGCC-tg---caa---cttcttatctac------caa-gaa-agtat
i Rhinopithecus_roxellana.NC_044563.1      n 256 I 23
s Rhinopithecus_strykeri.ctg107               988678 51 +   9417851 TTGTGAAC--------CTAATAAGAGAAGCC-TG---CAA---CTTCTTATCTAC------CAA-GAA-AGTAT
i Rhinopithecus_strykeri.ctg107            C 0 I 23
s Semnopithecus_entellus.k141_463041           10385 51 -     42431 TTGTGAAT--------CTAATAATAGAAGCC-TG---CAA---CTTCTTATCTAC------AGA-GAA-AGTCT
i Semnopithecus_entellus.k141_463041       C 0 n 0
s Semnopithecus_hypoleucos.k141_2314638          798 51 -      3947 ttgtgaat--------ctaataATAGAAGCC-TG---CAA---CTTCTTATCTAC------AGA-GAA-AGTCT
i Semnopithecus_hypoleucos.k141_2314638    C 0 n 0
s Semnopithecus_johnii.k141_1161280              737 51 -     11504 ttgtgaat--------ctaataatagaagcc-tg---caa---cttcttatctac------aga-gaa-agtct
i Semnopithecus_johnii.k141_1161280        C 0 n 0
s Semnopithecus_priam.k141_842164                865 51 -      4001 ttgtgaat--------ctaataatagaagcc-tg---caa---cttcttatctac------aga-gaa-agtct
i Semnopithecus_priam.k141_842164          C 0 n 0
s Semnopithecus_schistaceus.k141_1231873         921 51 +      4128 ttgtgaat--------ctaataatagaagcc-tg---caa---cttcttatctac------aga-gaa-agtct
i Semnopithecus_schistaceus.k141_1231873   C 0 n 0
s Semnopithecus_vetulus.k141_1248868             884 51 +     26236 ttgtgaat--------ctaataatagaagcc-tg---caa---cttcttatctac------aga-gaa-agtct
i Semnopithecus_vetulus.k141_1248868       C 0 n 0
s Symphalangus_syndactylus.tarseq_341          93223 51 +    759515 ttatggat--------ctaatagtagaagtc-tg---ctg---cttcttatttac------cGA-GAA-AGTGT
i Symphalangus_syndactylus.tarseq_341      C 0 C 0
s Theropithecus_gelada.CM009954.1           34437461 51 - 186847797 TTGTGGAT--------CTAACAATAGAAGCC-TG---CAA---CTTCTTACCTAC------CAA-GAA-AGTAT
i Theropithecus_gelada.CM009954.1          I 41 C 0
s Trachypithecus_auratus.k141_427399              41 51 +      2132 ttgtgaat--------ctaaccatagaaacc-ca---cca---cttcttatttac------cga-gaa-agctt
i Trachypithecus_auratus.k141_427399       n 51 n 51
s Trachypithecus_crepusculus.k141_553635        9931 51 -     49581 TTGTGAAC--------CTAATAAGAGAAGCC-TG---TAA---CTTCTTATCTAC------CAA-GAA-AGTAT
i Trachypithecus_crepusculus.k141_553635   C 0 I 23
s Trachypithecus_cristatus.k141_133281         25501 51 -     25719 ttgtgaat--------ctaaccatagaaacc-ca---cca---cttcttatttac------cga-gaa-agctt
i Trachypithecus_cristatus.k141_133281     I 74 n 51
s Trachypithecus_francoisi.k141_162516          9599 51 -     27459 ttgtgaac--------ctaataagagaagcc-tg---taa---cttcttatctac------caa-gaa-agtat
i Trachypithecus_francoisi.k141_162516     C 0 C 0
s Trachypithecus_geei.k141_346743               5045 51 -      5778 ttgtgaat--------ctaaatacagaagcc-ca---cta---cttcttatttac------cga-gaa-agctt
i Trachypithecus_geei.k141_346743          n 84 n 84
s Trachypithecus_germaini.k141_53511            9557 51 +     34020 TTGTGAAC--------CTAATAAGAGAAGCC-TG---TAA---CTTCTTATCTAC------CAA-GAA-AGTAT
i Trachypithecus_germaini.k141_53511       C 0 C 0
s Trachypithecus_hatinhensis.k141_651250        8748 51 -     26520 ttgtgaac--------ctaataagagaagcc-tg---taa---cttcttatctac------caa-gaa-agtat
i Trachypithecus_hatinhensis.k141_651250   I 71 I 23
s Trachypithecus_laotum.k141_317791               83 51 +      3021 ttgtgaat--------ctaaccatagaaacc-ca---cca---cttcttatttac------cga-gaa-agctt
i Trachypithecus_laotum.k141_317791        I 41 I 131
s Trachypithecus_leucocephalus.k141_3432          83 51 +     34692 TTGTGAAT--------CTAACCATAGAAACC-CA---CCA---CTTCTTATTTAC------CGA-GAa-agctt
i Trachypithecus_leucocephalus.k141_3432   I 41 n 256
s Trachypithecus_melamera.k141_447809            859 51 +      2770 ttgtgaat--------ctaaacatagaagcc-c---acca---cttcttatttac------cga-gaa-agctt
i Trachypithecus_melamera.k141_447809      n 190 n 190
s Trachypithecus_obscurus.k141_364986           9497 51 +      9567 TTGTGAAT--------CTAAATATAGAAGCC-CA---CCA---CTTCTTATTTAC------CGA-GAA-AGCTT
i Trachypithecus_obscurus.k141_364986      I 74 n 190
s Trachypithecus_phayrei.ctg59              10331721 51 +  18758866 ttGTGAac--------ctaataagagaagcc-tg---taa---cttcttatctac------caa-gaa-agtat
i Trachypithecus_phayrei.ctg59             n 182 I 23
s Trachypithecus_pileatus.k141_988280             83 51 +     32535 ttgtgaat--------ctaaccatagaaacc-ca---cca---cttcttatttac------cga-gaa-agctt
i Trachypithecus_pileatus.k141_988280      I 74 n 84

a score=0.000000
s hg38.chrM                                    12216 23 +     16569 ACA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
s Allenopithecus_nigroviridis.k141_3364170     10199 23 -     35425 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Allenopithecus_nigroviridis.k141_3364170 C 0 C 0
s Allochrocebus_lhoesti.k141_1513956            7802 23 +     44761 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Allochrocebus_lhoesti.k141_1513956       I 51 I 116
s Allochrocebus_preussi.k141_3466725            7819 23 +     53249 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Allochrocebus_preussi.k141_3466725       I 84 I 116
s Allochrocebus_solatus.k141_1967293           10941 23 +     22295 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Allochrocebus_solatus.k141_1967293       I 84 C 0
s Cercocebus_atys.KQ010939.1                29209680 23 +  29793205 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Cercocebus_atys.KQ010939.1               I 92 I 182
s Cercocebus_chrysogaster.k141_129667          30511 23 -     34785 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Cercocebus_chrysogaster.k141_129667      C 0 I 182
s Cercocebus_lunulatus.k141_1448852             6926 23 -     50786 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Cercocebus_lunulatus.k141_1448852        I 92 I 182
s Cercocebus_torquatus.k141_19251              12192 23 -     37166 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Cercocebus_torquatus.k141_19251          C 0 C 0
s Cercopithecus_ascanius.k141_1474622           9744 23 -     20001 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Cercopithecus_ascanius.k141_1474622      I 51 C 0
s Cercopithecus_cephus.k141_2404415            10316 23 +     17637 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Cercopithecus_cephus.k141_2404415        I 51 C 0
s Cercopithecus_diana.k141_2649081              7010 23 -     35932 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGccc
i Cercopithecus_diana.k141_2649081         I 125 I 116
s Cercopithecus_hamlyni.k141_1438427            4803 23 -     46742 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Cercopithecus_hamlyni.k141_1438427       I 124 I 182
s Cercopithecus_lowei.k141_3362039               408 23 -      3644 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Cercopithecus_lowei.k141_3362039         n 23 I 105
s Cercopithecus_albogularis.ctg28                 11340234 23 +  15093345 gca---a-----gaact-AC-TAAC------------------T-C--A-TGCcc
i Cercopithecus_albogularis.ctg28                C 0 C 0
s Cercopithecus_mona.ctg42                  15303294 23 +  20621893 GCA---A-----GAACT-Gc-taac------------------t-c--a-tgccc
i Cercopithecus_mona.ctg42                 I 51 I 116
s Cercopithecus_neglectus.k141_2030378          9662 23 -     11116 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Cercopithecus_neglectus.k141_2030378     I 51 C 0
s Cercopithecus_nictitans.k141_3162920          9352 23 +     18223 GCA---A-----GAACT-AC-TAAC------------------T-C--A-TGCCC
i Cercopithecus_nictitans.k141_3162920     I 84 C 0
s Cercopithecus_petaurista.k141_1586297        10367 23 +     12913 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Cercopithecus_petaurista.k141_1586297    I 51 C 0
s Cercopithecus_pogonias.k141_715341           34326 23 +     35178 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Cercopithecus_pogonias.k141_715341       I 51 C 0
s Cercopithecus_roloway.k141_2783013           27809 23 -     43083 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Cercopithecus_roloway.k141_2783013       I 125 C 0
s Chlorocebus_aethiops.ctg56                12889036 23 +  17892486 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Chlorocebus_aethiops.ctg56               I 51 I 116
s Chlorocebus_pygerythrus.k141_1337201         11679 23 -     14715 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Chlorocebus_pygerythrus.k141_1337201     I 84 C 0
s Chlorocebus_sabaeus.CM001941.2            72798174 23 + 126035930 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Chlorocebus_sabaeus.CM001941.2           I 51 C 0
s Colobus_angolensis.KN980429.1              4271019 23 -   6432042 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Colobus_angolensis.KN980429.1            n 74 I 117
s Colobus_guereza.LG01                      35866210 23 - 200372422 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Colobus_guereza.LG01                     N 0 I 116
s Colobus_polykomos.k141_1498685                3281 23 -      4776 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Colobus_polykomos.k141_1498685           I 51 I 116
s Erythrocebus_patas.Contig40               15741847 23 +  21278523 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCcc
i Erythrocebus_patas.Contig40              I 51 I 116
s Gorilla_beringei.k141_1529327                16278 23 +     19115 gca---a-----gaact-gc-taac------------------t-c--a-tgccC
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg101                4013695 23 +   8526212 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Lophocebus_aterrimus.ctg101              C 0 C 0
s Macaca_arctoides.k141_416589                  1777 23 -     26632 gca---a-----gaact-gc-taac------------------t-c--a-ttccc
i Macaca_arctoides.k141_416589             C 0 C 0
s Macaca_assamensis.Contig5                 34321760 23 -  60120075 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Macaca_assamensis.Contig5                I 51 I 116
s Macaca_cyclopis.k119_512377                   5292 23 +     21625 GCA---A-----GAACT-Gc-taac------------------t-c--a-tgccc
i Macaca_cyclopis.k119_512377              I 51 I 249
s Macaca_fascicularis.k141_747886              23883 23 +     40098 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Macaca_fascicularis.k141_747886          I 125 I 259
s Macaca_fuscata.k119_609323                    9726 23 -     25971 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Macaca_fuscata.k119_609323               I 162 I 249
s Macaca_leonina.k141_3706292                  13656 23 -     29935 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Macaca_leonina.k141_3706292              n 23 I 116
s Macaca_maura.k141_1765751                     9859 23 -     48667 GCA---A-----GAACT-Gc-taac------------------t-c--a-tgccc
i Macaca_maura.k141_1765751                I 50 C 0
s Macaca_mulatta.NC_041758.1                34259058 23 - 187317192 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Macaca_mulatta.NC_041758.1               n 23 I 249
s Macaca_nemestrina.KQ005114.1               9180167 23 -   9503891 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Macaca_nemestrina.KQ005114.1             I 51 I 116
s Macaca_nigra.k141_580096                     31464 23 -     56270 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Macaca_nigra.k141_580096                 C 0 C 0
s Macaca_radiata.k141_501718                    2052 23 +     18260 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Macaca_radiata.k141_501718               I 84 I 116
s Macaca_siberu.k141_204286                    10806 23 +     30583 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Macaca_siberu.k141_204286                C 0 C 0
s Macaca_silenus.Contig1                    14194142 23 +  84276269 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Macaca_silenus.Contig1                   n 23 I 116
s Macaca_thibetana.k99_674455                   1701 23 -      5098 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Macaca_thibetana.k99_674455              C 0 C 0
s Macaca_tonkeana.k141_1979834                  1826 23 +     26550 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Macaca_tonkeana.k141_1979834             C 0 C 0
s Mandrillus_leucophaeus.scaffold228        12685778 23 -  20774610 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Mandrillus_leucophaeus.scaffold228       C 0 C 0
s Mandrillus_sphinx.Contig7                 14440648 23 +  51421834 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCcc
i Mandrillus_sphinx.Contig7                I 51 I 116
s Miopithecus_ogouensis.k141_69083             11067 23 -     35729 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Miopithecus_ogouensis.k141_69083         I 51 C 0
s Nasalis_larvatus.k141_915577                  3623 23 -      7098 gca---a-----gaacT-GC-TAAC------------------T-C--A-TGCCC
i Nasalis_larvatus.k141_915577             n 536 I 260
s Pan_paniscus.CM003390.1                   99458321 23 - 162613886 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Pan_paniscus.CM003390.1                  I 92 C 0
s Pan_troglodytes.CM009240.2               110736734 23 - 128755405 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Pan_troglodytes.CM009240.2               C 0 I 109
s Papio_anubis.CM001495.2                   34020011 26 - 183742232 GCA---A-----GAACTAGC-TAAA------------------C-CCAA-TGCCC
i Papio_anubis.CM001495.2                  I 117 I 155
s Papio_cynocephalus.k141_2026657               9934 23 +     45296 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Papio_cynocephalus.k141_2026657          C 0 C 0
s Papio_hamadryas.Contig36                  14843297 23 +  22161365 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Papio_hamadryas.Contig36                 I 51 I 116
s Papio_kindae.k141_5429907                     1970 23 -     26587 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Papio_kindae.k141_5429907                C 0 C 0
s Papio_papio.k141_2436119                     34559 23 -     56783 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Papio_papio.k141_2436119                 I 51 I 116
s Papio_ursinus.k141_2685680                   11828 23 +     15956 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Papio_ursinus.k141_2685680               I 51 I 116
s Piliocolobus_badius.k141_2497507              6639 23 +     48083 gca---a-----ggact-gc-taac------------------t-c--a-tgccc
i Piliocolobus_badius.k141_2497507         I 84 I 108
s Piliocolobus_gordonorum.k141_1340638          2891 23 +      4657 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Piliocolobus_gordonorum.k141_1340638     n 533 I 116
s Piliocolobus_kirkii.k141_304712               3277 23 -     65669 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Piliocolobus_kirkii.k141_304712          I 160 I 182
s Piliocolobus_tephrosceles.PDMG02000068.1   6528290 23 -  40397039 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCG
i Piliocolobus_tephrosceles.PDMG02000068.1 n 23 I 116
s Pongo_abelii.CM009269.2                  128598333 23 - 145408105 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Pongo_abelii.CM009269.2                  I 84 C 0
s Pongo_pygmaeus.ctg463                       334367 23 +    482523 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Pongo_pygmaeus.ctg463                    n 131 I 412
s Presbytis_comata.k141_1477013                10540 23 +     35761 gca---g-----gaact-gc-taac------------------t-c--a-tgccc
i Presbytis_comata.k141_1477013            n 664 C 0
s Presbytis_mitrata.k141_1676753                2761 23 +     18814 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Presbytis_mitrata.k141_1676753           n 572 n 572
s Pygathrix_cinerea.k141_1473548               20028 23 +     26068 gca---a-----gaact-gc-tgac------------------t-c--a-tgccc
i Pygathrix_cinerea.k141_1473548           I 84 C 0
s Pygathrix_nigripes_b.ctg270                   2252507 23 +   3288884 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Pygathrix_nigripes_b.ctg270                 I 83 I 315
s Pygathrix_nigripes_a.k141_626429               10597 23 -     17932 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Pygathrix_nigripes_a.k141_626429           I 83 I 108
s Rhinopithecus_bieti.k119_488595               3649 23 +      6941 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Rhinopithecus_bieti.k119_488595          I 83 I 250
s Rhinopithecus_roxellana.NC_044555.1       47662388 23 - 154578354 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Rhinopithecus_roxellana.NC_044555.1      I 83 I 260
s Rhinopithecus_strykeri.ctg20              25379630 23 +  26372126 Gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Rhinopithecus_strykeri.ctg20             I 83 I 260
s Semnopithecus_entellus.k141_439698            2603 23 -     12026 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Semnopithecus_entellus.k141_439698       I 84 I 261
s Semnopithecus_hypoleucos.k141_296292         29254 23 -     38684 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Semnopithecus_hypoleucos.k141_296292     I 84 N 0
s Semnopithecus_johnii.k141_209824             11783 23 +     14026 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Semnopithecus_johnii.k141_209824         I 84 I 108
s Semnopithecus_priam.k141_254402              10801 23 -     20235 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Semnopithecus_priam.k141_254402          I 84 I 260
s Semnopithecus_schistaceus.k141_1398757        6830 23 -     16253 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Semnopithecus_schistaceus.k141_1398757   I 84 N 0
s Semnopithecus_vetulus.k141_357222            31334 23 +     37979 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Semnopithecus_vetulus.k141_357222        I 84 I 260
s Symphalangus_syndactylus.tarseq_341          93274 23 +    759515 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCcc
i Symphalangus_syndactylus.tarseq_341      C 0 C 0
s Theropithecus_gelada.CM009954.1           34437512 23 - 186847797 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Theropithecus_gelada.CM009954.1          C 0 I 182
s Trachypithecus_auratus.k141_1075286           4315 23 -      5743 gca---a-----gaatt-gc-taac------------------t-c--a-tgccc
i Trachypithecus_auratus.k141_1075286      I 51 I 108
s Trachypithecus_crepusculus.k141_1287273      11758 23 -     21237 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Trachypithecus_crepusculus.k141_1287273  I 84 n 23
s Trachypithecus_cristatus.k141_815529          4354 23 -      5857 gca---a-----gaatt-gc-taac------------------t-c--a-tgccc
i Trachypithecus_cristatus.k141_815529     I 51 I 108
s Trachypithecus_francoisi.k141_162516          9650 23 -     27459 gca---g-----gaact-gc-taac------------------t-c--a-tgccc
i Trachypithecus_francoisi.k141_162516     C 0 C 0
s Trachypithecus_geei.k141_963886              11709 23 +     21425 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Trachypithecus_geei.k141_963886          I 84 I 250
s Trachypithecus_germaini.k141_53511            9608 23 +     34020 GCA---G-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Trachypithecus_germaini.k141_53511       C 0 C 0
s Trachypithecus_hatinhensis.k141_37173         4200 23 -      5703 gca---a-----gaaTT-GC-TAAC------------------T-C--A-TGCCC
i Trachypithecus_hatinhensis.k141_37173    I 51 I 116
s Trachypithecus_laotum.k141_1230304           18115 23 +     27545 GCA---G-----GAACt-gc-taac------------------t-c--a-tgccc
i Trachypithecus_laotum.k141_1230304       I 84 I 250
s Trachypithecus_leucocephalus.k141_359357      5454 23 +     15007 gca---g-----gaact-gc-taac------------------t-c--a-tgccc
i Trachypithecus_leucocephalus.k141_359357 I 84 I 108
s Trachypithecus_melamera.k141_782462           3990 23 -      4373 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Trachypithecus_melamera.k141_782462      I 84 I 250
s Trachypithecus_obscurus.k141_932129          11734 23 -     19365 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Trachypithecus_obscurus.k141_932129      I 84 C 0
s Trachypithecus_phayrei.ctg36              23858679 23 +  24713378 GCA---A-----GAACT-GC-TAAC------------------T-C--A-TGCCC
i Trachypithecus_phayrei.ctg36             I 84 n 23
s Trachypithecus_pileatus.k141_1977800         11769 23 -     42176 gca---a-----gaact-gc-taac------------------t-c--a-tgccc
i Trachypithecus_pileatus.k141_1977800     I 84 I 260

a score=0.000000
s hg38.chrM                                    12239 108 +     16569 C---CAT---GTCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATAA-C----AGCTATCCATTG-GTCTTAGGCCCCAAAAA-TTTTGG--TGCAACT-C--CA-AATAAAA-GTAA-TAACCAT-------GCA
s Allenopithecus_nigroviridis.k141_3364170     10222 108 -     35425 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Allenopithecus_nigroviridis.k141_3364170 C 0 I 41
s Allochrocebus_lhoesti.k141_2600595           44209 115 -     69378 C---CGT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-TTCTTAGGAACCGAAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACATTTGTTTTGTA
i Allochrocebus_lhoesti.k141_2600595       n 116 C 0
s Allochrocebus_preussi.k141_3734564            9587 115 -     19198 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-ttcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacatTTGTTTTGTA
i Allochrocebus_preussi.k141_3734564       I 23 I 41
s Allochrocebus_solatus.k141_1967293           10964 115 +     22295 C---CGT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-TTCTTAGGAACCGAAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACATTTGTTTTGTA
i Allochrocebus_solatus.k141_1967293       C 0 I 9
s Cercocebus_atys.KQ012497.1                13121172 108 -  15015882 c---cat---gcctaaCA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-GTCTTAGGAACCGAAAA-CATTGG--TGTAACt-c--ca-aataaaa-gtaa-caaacat-------gta
i Cercocebus_atys.KQ012497.1               I 23 I 41
s Cercocebus_chrysogaster.k141_569357           1922 108 -     27394 C---CAT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCTGTTG-GTCTTAGTAACCGAAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Cercocebus_chrysogaster.k141_569357      n 182 I 41
s Cercocebus_lunulatus.k141_5051340             1950 108 +     26539 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Cercocebus_lunulatus.k141_5051340        I 23 C 0
s Cercocebus_torquatus.k141_19251              12215 108 -     37166 c---cat---gCCtaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Cercocebus_torquatus.k141_19251          C 0 I 41
s Cercopithecus_ascanius.k141_1474622           9767 108 -     20001 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Cercopithecus_ascanius.k141_1474622      C 0 C 0
s Cercopithecus_cephus.k141_2404415            10339 108 +     17637 C---CGT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-GTCTTAGGAACCGAAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Cercopithecus_cephus.k141_2404415        C 0 C 0
s Cercopithecus_diana.k141_1147129             14794 108 +     57904 t---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtctgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Cercopithecus_diana.k141_1147129         I 23 C 0
s Cercopithecus_hamlyni.k141_1438795            9630 108 -     20535 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Cercopithecus_hamlyni.k141_1438795       I 74 I 9
s Cercopithecus_lowei.k141_784555               9998 108 -     18723 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Cercopithecus_lowei.k141_784555          I 23 I 9
s Cercopithecus_albogularis.ctg28                 11340257 108 +  15093345 c---CGT---GCCTAACA-ACATGgctttctcaacttttaaA-GGATTA-G----AGTTGTCCGTTG-GTCTTAGGAACCGAAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Cercopithecus_albogularis.ctg28                C 0 I 9
s Cercopithecus_mona.ctg93                    938135 108 +   9558045 C---CGT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-GTCTTAGgaaccgaaaa-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Cercopithecus_mona.ctg93                 n 116 C 0
s Cercopithecus_neglectus.k141_2030378          9685 108 -     11116 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Cercopithecus_neglectus.k141_2030378     C 0 C 0
s Cercopithecus_nictitans.k141_3162920          9375 108 +     18223 C---CGT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-GTCTTAGGAACCGAAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Cercopithecus_nictitans.k141_3162920     C 0 I 9
s Cercopithecus_petaurista.k141_1586297        10390 108 +     12913 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Cercopithecus_petaurista.k141_1586297    C 0 I 9
s Cercopithecus_pogonias.k141_715341           34349 108 +     35178 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Cercopithecus_pogonias.k141_715341       C 0 C 0
s Cercopithecus_roloway.k141_2783013           27832 108 -     43083 c---gat---gtttaaca-acatggctttcttaacttttaaa-ggatta-g----agttatccattg-gtcttaggcaccaaaaa-cgttga--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Cercopithecus_roloway.k141_2783013       C 0 I 8
s Chlorocebus_aethiops.ctg119                4670525 108 +   8571089 c---CGT---GCCTAACA-ACATGgctttctcaacttttaaa-ggatta-g----agttgtccgttg-ttcttagGAACCGAAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Chlorocebus_aethiops.ctg119              n 116 C 0
s Chlorocebus_pygerythrus.k141_1337201         11702 108 -     14715 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-ttcttaggaaccgaaaa-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Chlorocebus_pygerythrus.k141_1337201     C 0 C 0
s Chlorocebus_sabaeus.CM001941.2            72798197 108 + 126035930 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-ttcttaggaaccgaaaa-cattgg--tgtaaCt-c--ca-aataaaa-gtaa-caaacat-------gta
i Chlorocebus_sabaeus.CM001941.2           C 0 C 0
s Colobus_angolensis.KN980262.1              5337164 108 -   7104014 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccaaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Colobus_angolensis.KN980262.1            I 74 I 41
s Colobus_guereza.LG13                      12493736 108 + 131231583 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccaaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Colobus_guereza.LG13                     n 116 I 41
s Colobus_polykomos.k141_346247                10398 108 -     17284 C---CGT---GCCTAACa-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccaaaaa-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Colobus_polykomos.k141_346247            I 23 I 41
s Erythrocebus_patas.Contig114                871188 108 -   6746984 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-ttcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Erythrocebus_patas.Contig114             n 116 C 0
s Gorilla_beringei.k141_1529327                16301 108 +     19115 c---cat---gCCTAACa-acattgctttctcaagttgtaga-ggataa-g----agctatccattg-gtctcaggaaccaaaaa-TATTGG--TGCAACT-C--CA-AATACAA-GTAA-TAATCAT-------GTA
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg101                4013718 109 +   8526212 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaagGTAA-CAAACAT-------GTA
i Lophocebus_aterrimus.ctg101              C 0 I 41
s Macaca_arctoides.k141_416589                  1800 108 -     26632 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgtta-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_arctoides.k141_416589             C 0 C 0
s Macaca_assamensis.Contig80                  960793 108 +   9119267 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-Cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_assamensis.Contig80               n 116 C 0
s Macaca_cyclopis.k119_883431                   1727 108 -     12002 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_cyclopis.k119_883431              I 23 I 41
s Macaca_fascicularis.k141_123747              10816 108 +     11179 C---CAT---GCCTAACA-ACATGGCTTTCTCAACTtttaaa-ggatta-g----AGTTGTCCGttg-gtcttagGAACCGAAAA-Cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_fascicularis.k141_123747          n 259 n 259
s Macaca_fuscata.k119_1029619                   1735 108 -      2076 C---CAT---GCCTAAca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_fuscata.k119_1029619              n 249 I 41
s Macaca_leonina.k141_172241                    2294 108 -     27484 C---CAT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-GTCttagGAACCGAAAA-Cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_leonina.k141_172241               I 23 C 0
s Macaca_maura.k141_1765751                     9882 108 -     48667 c---tat---gcctaaca-acatggctttctcaactttcaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_maura.k141_1765751                C 0 C 0
s Macaca_mulatta.NC_041767.1                74734332 108 + 128056306 c---cat---gcctaaCA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-GTCTTAGGAACCGAAAA-CATTGG--TGTAACt-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_mulatta.NC_041767.1               I 23 I 41
s Macaca_nemestrina.KQ007637.1              13002612 108 +  21299586 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaaCt-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_nemestrina.KQ007637.1             n 116 I 41
s Macaca_nigra.k141_580096                     31487 108 -     56270 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccattg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaaCAT-------GTA
i Macaca_nigra.k141_580096                 C 0 I 41
s Macaca_radiata.k141_2031987                   1862 108 +     59341 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgtta-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_radiata.k141_2031987              I 23 C 0
s Macaca_siberu.k141_204286                    10829 108 +     30583 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_siberu.k141_204286                C 0 C 0
s Macaca_silenus.Contig84                     962489 108 +   9193133 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Macaca_silenus.Contig84                  I 23 C 0
s Macaca_thibetana.k99_674455                   1724 108 -      5098 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgtta-gtcttaggaaccgaaaa-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Macaca_thibetana.k99_674455              C 0 I 41
s Macaca_tonkeana.k141_1979834                  1849 108 +     26550 C---CAT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCATTG-GTCTTAGGAACCAAAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Macaca_tonkeana.k141_1979834             C 0 I 41
s Mandrillus_leucophaeus.scaffold228        12685801 108 -  20774610 C---CAT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGCTG-GTCTTAGGAACCGAAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Mandrillus_leucophaeus.scaffold228       C 0 C 0
s Mandrillus_sphinx.Contig93                  913541 108 -   9270810 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Mandrillus_sphinx.Contig93               I 23 C 0
s Miopithecus_ogouensis.k141_69083             11090 108 -     35729 C---CGT---GCCTAACa-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Miopithecus_ogouensis.k141_69083         C 0 C 0
s Nasalis_larvatus.k141_585804                  9719 108 -     37962 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-catcga--tataact-c--ca-aataaaa-gtaa-caaacat-------gta
i Nasalis_larvatus.k141_585804             n 260 I 41
s Pan_paniscus.CM003390.1                   99458344 108 - 162613886 C---CAT---GCCTAACA-ACATGGCTTTCTCAAGTTGTAGA-GGATAA-G----AGCTATCCATTG-GTCTCAGGAACCAAAAA-TATTGG--TGCAACT-C--CA-AATACAA-GTAA-TAATCAT-------GTA
i Pan_paniscus.CM003390.1                  C 0 I 194
s Pan_troglodytes.CM009245.2                57354396 108 + 156046543 C---CAT---GCCTAACA-ACATGGCTTTCTCAAGTTGTAGA-GGATAA-G----AGCTATCCATTG-GTCTCAGGAACCAAAAA-TATTGG--TGCAACT-C--CA-AATACAA-GTAA-TAATCAT-------GTA
i Pan_troglodytes.CM009245.2               I 107 I 194
s Papio_anubis.CM001504.2                   71917202 108 + 124513186 C---CAT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-GTCTTAGGAACCGAAAA-CATTGG--TGTAACT-C--CA-AATAAAG-Gtaa-caaacat-------gta
i Papio_anubis.CM001504.2                  I 23 C 0
s Papio_cynocephalus.k141_2026657               9957 108 +     45296 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaag-gtaa-caaacat-------gta
i Papio_cynocephalus.k141_2026657          C 0 I 41
s Papio_hamadryas.Contig48                  11401899 108 +  17843046 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Papio_hamadryas.Contig48                 I 23 C 0
s Papio_kindae.k141_5429907                     1993 108 -     26587 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaag-gtaa-caaacat-------gta
i Papio_kindae.k141_5429907                C 0 C 0
s Papio_papio.k141_1575386                      9270 108 +     19082 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccgaaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Papio_papio.k141_1575386                 I 23 I 41
s Papio_ursinus.k141_1596938                    9586 108 -     18940 c---cat---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaacCGAAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Papio_ursinus.k141_1596938               I 23 C 0
s Piliocolobus_badius.k141_1515087              4305 108 -     29604 C---CGT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-GTCTTAGGAACCAAAAA-CATTTG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Piliocolobus_badius.k141_1515087         I 74 I 41
s Piliocolobus_gordonorum.k141_345746           2048 108 +     63902 C---CGT---GCCTAACA-ACATGGCTTTCTCAacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccaaaaa-CATTTG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Piliocolobus_gordonorum.k141_345746      I 74 I 41
s Piliocolobus_kirkii.k141_72784                9917 108 -     35819 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccaaaaa-catttg--tgtaact-c--ca-aataaaa-gtaA-CAAACAT-------GTA
i Piliocolobus_kirkii.k141_72784           I 74 I 41
s Piliocolobus_tephrosceles.PDMG02000249.1   5373059 108 -  11423478 c---cgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccaaaaa-catttg--tgtaaCt-c--ca-aataaaa-gtaa-caaacat-------gta
i Piliocolobus_tephrosceles.PDMG02000249.1 I 23 I 41
s Pongo_abelii.CM009269.2                  128598356 108 - 145408105 C---CGA---GCCTAACa-acatggctttctcaagttttaga-GGATAA-G----AGATATCCATTG-GTCTCAGGAACCAAAAA-TATTGG--TGCAACT-C--CA-AATACAA-GTAA-TAATCAT-------GTA
i Pongo_abelii.CM009269.2                  C 0 I 142
s Pongo_pygmaeus.ctg22                         45055 107 +  44630897 c---cat---gcctaac--acatggctttctcaactttcaga-ggataa-g----agctatctgttg-ctcctaggaaccaaaaa-tattgg--tgcaact-c--ca-aataaaa-gtaa-taatcac-------gta
i Pongo_pygmaeus.ctg22                     I 185 I 134
s Presbytis_comata.k141_1477013                10563 108 +     35761 c---cgt---gcctaaca-acatggctttctcaactttttaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaaCAT-------GTA
i Presbytis_comata.k141_1477013            C 0 C 0
s Presbytis_mitrata.k141_315593                10245 108 -     13532 C---CGT---GCCTAACa-acacggctttctcaactttttaa-ggatta-g----aggtgtccgttg-gtcttaggaaccacaaA-Cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Presbytis_mitrata.k141_315593            n 572 I 41
s Pygathrix_cinerea.k141_1473548               20051 108 +     26068 c---cat---gcctaaca-acatgactttctcaacttttaaa-ggatta-g----agtcatccgttg-gtcttaggagccaaaaa-cattgg--tgcaact-c--ca-aataaaa-gcaa-caaacat-------gtg
i Pygathrix_cinerea.k141_1473548           C 0 C 0
s Pygathrix_nigripes_b.ctg275                   1005647 108 -   1164381 c---cgt---gcctaaca-tcatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Pygathrix_nigripes_b.ctg275                 I 23 I 41
s Pygathrix_nigripes_a.k141_1226842               8689 108 -     18851 c---cgt---gcctaaca-tcatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Pygathrix_nigripes_a.k141_1226842          I 23 I 41
s Rhinopithecus_bieti.k119_193647               1878 108 -     21440 c---cgt---gcctaaca-tcatggctttctcaacttttaaa-ggatta-a----agttgtccgttg-atcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Rhinopithecus_bieti.k119_193647          I 23 I 41
s Rhinopithecus_roxellana.NC_044563.1       80415798 108 - 130852392 c---cgt---gcctaaca-tcatggctttctcaacttttaaa-ggatta-a----agttgtccgttg-atcttaggaaccacaaa-cattgg--tgtaaCt-c--ca-aataaaa-gtaa-caaacat-------gta
i Rhinopithecus_roxellana.NC_044563.1      I 23 I 41
s Rhinopithecus_strykeri.ctg107               988752 108 +   9417851 C---CGT---GCCTAACA-TCATGGCTTTCTCAACTTTTAAA-GGATTA-A----AGTTGTCCGTTG-ATCTTAGGAACCACAAA-CATTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Rhinopithecus_strykeri.ctg107            I 23 I 41
s Semnopithecus_entellus.k141_1227077          10428 108 -     11780 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Semnopithecus_entellus.k141_1227077      n 261 I 9
s Semnopithecus_hypoleucos.k141_2227288         6519 108 +     16381 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Semnopithecus_hypoleucos.k141_2227288    N 0 I 41
s Semnopithecus_johnii.k141_1605039             9634 108 -     20764 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Semnopithecus_johnii.k141_1605039        n 108 I 41
s Semnopithecus_priam.k141_296549              10460 108 +     19847 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaca-gtaa-caaacat-------gta
i Semnopithecus_priam.k141_296549          n 260 C 0
s Semnopithecus_schistaceus.k141_1024652        6499 108 -     31631 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Semnopithecus_schistaceus.k141_1024652   N 0 I 41
s Semnopithecus_vetulus.k141_28520              9649 108 -     32553 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Semnopithecus_vetulus.k141_28520         n 260 C 0
s Symphalangus_syndactylus.tarseq_341          93297 108 +    759515 C---CAT---GCCTAACA-ACATGGCGTTCTCAACTTTTAGA-GGATGA-G----AGCTATCTGTTG-GTCCTAGGAACCAAAAA-TATTGG--TGGAACT-C--CA-AACAaaa-gtaA-TAATCAC-------GTA
i Symphalangus_syndactylus.tarseq_341      C 0 I 1
s Theropithecus_gelada.CM009964.1           73630613 108 + 126097711 C---CAT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----AGTTGTCCGTTG-GTCTTAGGAACCGAAAA-CATTGG--TGTAACt-c--ca-aataaaa-gtaa-caaacat-------gta
i Theropithecus_gelada.CM009964.1          I 74 I 41
s Trachypithecus_auratus.k141_266101           11101 108 +     29438 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Trachypithecus_auratus.k141_266101       n 108 I 41
s Trachypithecus_crepusculus.k141_553635       10005 108 -     49581 C---TGT---GCCTAACA-ACATGGCTTTCTCaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaACAT-------GTA
i Trachypithecus_crepusculus.k141_553635   I 23 C 0
s Trachypithecus_cristatus.k141_1002979        15257 108 +     32958 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Trachypithecus_cristatus.k141_1002979    n 108 I 41
s Trachypithecus_francoisi.k141_162516          9673 108 -     27459 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Trachypithecus_francoisi.k141_162516     C 0 C 0
s Trachypithecus_geei.k141_1225101             10386 108 +     37797 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Trachypithecus_geei.k141_1225101         n 250 I 41
s Trachypithecus_germaini.k141_53511            9631 108 +     34020 C---TGT---GCCTAACA-ACATGGCTTTCTCAACTTTTAAA-GGATTA-G----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaACAT-------GTA
i Trachypithecus_germaini.k141_53511       C 0 C 0
s Trachypithecus_hatinhensis.k141_651250        8822 108 -     26520 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Trachypithecus_hatinhensis.k141_651250   I 23 I 41
s Trachypithecus_laotum.k141_68479              9634 108 -     27453 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Trachypithecus_laotum.k141_68479         I 74 I 41
s Trachypithecus_leucocephalus.k141_31838       9639 108 +     10993 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Trachypithecus_leucocephalus.k141_31838  n 108 I 41
s Trachypithecus_melamera.k141_199184           1963 108 +     12574 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Trachypithecus_melamera.k141_199184      n 250 I 41
s Trachypithecus_obscurus.k141_932129          11757 108 -     19365 c---cat---gtctaaca-acacggatttctcaacttttaaa-ggattc-g----agtcatccattg-gtcttaggagccaaaaa-cactgg--tgcgact-c--ca-aataaaa-gtaa-caaacat-------gta
i Trachypithecus_obscurus.k141_932129      C 0 C 0
s Trachypithecus_phayrei.ctg59              10331795 108 +  18758866 c---tgt---gcctaaca-acatggctttctcaacttttaaa-ggatta-g----agttgtccgttg-gtcttaggaaccacaaa-cattgg--tgtaact-c--ca-aataaaa-gtaa-caaacat-------gta
i Trachypithecus_phayrei.ctg59             I 23 I 41
s Trachypithecus_pileatus.k141_1770085         10413 108 -     28608 C---TGT---GCCTAACA-ACATGGCTttctcaacttttaaa-gGATTA-G----AGTtgtccgttg-gtcttaggaaccacaaa-catTGG--TGTAACT-C--CA-AATAAAA-GTAA-CAAACAT-------GTA
i Trachypithecus_pileatus.k141_1770085     n 260 C 0

a score=0.000000
s hg38.chrM                                    12347 9 +     16569 CACTACTAT
s Allenopithecus_nigroviridis.k141_3930415      8203 1 -     11164 t--------
i Allenopithecus_nigroviridis.k141_3930415 n 41 I 243
s Allochrocebus_lhoesti.k141_2600595           44324 1 -     69378 T--------
i Allochrocebus_lhoesti.k141_2600595       C 0 I 40
s Allochrocebus_preussi.k141_1094977            3701 1 +     20147 T--------
i Allochrocebus_preussi.k141_1094977       I 332 n 41
s Allochrocebus_solatus.k141_2644035            6511 1 -     24567 T--------
i Allochrocebus_solatus.k141_2644035       I 331 n 9
s Cercocebus_atys.KQ010367.1                11408039 1 -  11668111 T--------
i Cercocebus_atys.KQ010367.1               I 182 I 8
s Cercocebus_chrysogaster.k141_1945715         89049 1 -    105757 t--------
i Cercocebus_chrysogaster.k141_1945715     I 182 I 8
s Cercocebus_lunulatus.k141_5051340             2058 1 +     26539 t--------
i Cercocebus_lunulatus.k141_5051340        C 0 I 8
s Cercocebus_torquatus.k141_1852545             5006 1 +     49255 t--------
i Cercocebus_torquatus.k141_1852545        n 41 I 8
s Cercopithecus_ascanius.k141_1474622           9875 1 -     20001 t--------
i Cercopithecus_ascanius.k141_1474622      C 0 I 8
s Cercopithecus_cephus.k141_2404415            10447 1 +     17637 T--------
i Cercopithecus_cephus.k141_2404415        C 0 I 8
s Cercopithecus_diana.k141_1147129             14902 1 +     57904 t--------
i Cercopithecus_diana.k141_1147129         C 0 I 137
s Cercopithecus_hamlyni.k141_163049            10541 1 +     13474 t--------
i Cercopithecus_hamlyni.k141_163049        I 215 I 201
s Cercopithecus_lowei.k141_3362039               536 1 -      3644 t--------
i Cercopithecus_lowei.k141_3362039         I 105 I 138
s Cercopithecus_albogularis.ctg350                  528123 1 -    874882 t--------
i Cercopithecus_albogularis.ctg350               n 9 n 9
s Cercopithecus_mona.ctg93                    938243 1 +   9558045 T--------
i Cercopithecus_mona.ctg93                 C 0 I 40
s Cercopithecus_neglectus.k141_2030378          9793 1 -     11116 t--------
i Cercopithecus_neglectus.k141_2030378     C 0 I 8
s Cercopithecus_nictitans.k141_2794664          4696 1 +     21736 t--------
i Cercopithecus_nictitans.k141_2794664     n 9 n 9
s Cercopithecus_petaurista.k141_2799           62417 1 +     71209 T--------
i Cercopithecus_petaurista.k141_2799       n 9 n 9
s Cercopithecus_pogonias.k141_715341           34457 1 +     35178 t--------
i Cercopithecus_pogonias.k141_715341       C 0 I 8
s Cercopithecus_roloway.k141_2547499           13069 1 +     32417 T--------
i Cercopithecus_roloway.k141_2547499       I 222 I 468
s Chlorocebus_aethiops.ctg119                4670633 1 +   8571089 T--------
i Chlorocebus_aethiops.ctg119              C 0 I 40
s Chlorocebus_pygerythrus.k141_1337201         11810 1 -     14715 T--------
i Chlorocebus_pygerythrus.k141_1337201     C 0 I 40
s Chlorocebus_sabaeus.CM001941.2            72798305 1 + 126035930 t--------
i Chlorocebus_sabaeus.CM001941.2           C 0 I 40
s Colobus_angolensis.KN980207.1              6635271 1 -   6947193 t--------
i Colobus_angolensis.KN980207.1            n 41 I 201
s Colobus_guereza.LG09                     103628564 1 - 145964134 T--------
i Colobus_guereza.LG09                     n 41 n 41
s Colobus_polykomos.k141_1644896                8036 1 -     13251 T--------
i Colobus_polykomos.k141_1644896           n 41 I 201
s Erythrocebus_patas.Contig114                871296 1 -   6746984 t--------
i Erythrocebus_patas.Contig114             C 0 I 40
s Gorilla_beringei.k141_1529327                16409 1 +     19115 T--------
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg4240                   473 1 +     16837 t--------
i Lophocebus_aterrimus.ctg4240             I 215 I 201
s Macaca_arctoides.k141_416589                  1908 1 -     26632 t--------
i Macaca_arctoides.k141_416589             C 0 I 40
s Macaca_assamensis.Contig80                  960901 1 +   9119267 T--------
i Macaca_assamensis.Contig80               C 0 I 40
s Macaca_cyclopis.k119_897545                   4113 1 -     10490 T--------
i Macaca_cyclopis.k119_897545              n 41 I 8
s Macaca_fascicularis.k141_1173983             18442 1 -     25728 T--------
i Macaca_fascicularis.k141_1173983         n 259 I 332
s Macaca_fuscata.k119_959180                    5167 1 +     11606 t--------
i Macaca_fuscata.k119_959180               I 182 I 8
s Macaca_leonina.k141_172241                    2402 1 -     27484 t--------
i Macaca_leonina.k141_172241               C 0 I 40
s Macaca_maura.k141_1765751                     9990 1 -     48667 t--------
i Macaca_maura.k141_1765751                C 0 I 40
s Macaca_mulatta.NC_041756.1                54488125 1 + 185288947 T--------
i Macaca_mulatta.NC_041756.1               I 175 I 8
s Macaca_nemestrina.KQ006940.1               9376247 1 -  10413719 T--------
i Macaca_nemestrina.KQ006940.1             I 131 I 230
s Macaca_nigra.k141_563100                      8481 1 +     15148 t--------
i Macaca_nigra.k141_563100                 I 215 I 332
s Macaca_radiata.k141_2031987                   1970 1 +     59341 t--------
i Macaca_radiata.k141_2031987              C 0 I 40
s Macaca_siberu.k141_204286                    10937 1 +     30583 t--------
i Macaca_siberu.k141_204286                C 0 I 40
s Macaca_silenus.Contig84                     962597 1 +   9193133 t--------
i Macaca_silenus.Contig84                  C 0 I 40
s Macaca_thibetana.k99_179800                   4089 1 +     12326 T--------
i Macaca_thibetana.k99_179800              I 182 I 230
s Macaca_tonkeana.k141_305781                  16815 1 +     94123 t--------
i Macaca_tonkeana.k141_305781              I 182 I 8
s Mandrillus_leucophaeus.scaffold228        12685909 1 -  20774610 T--------
i Mandrillus_leucophaeus.scaffold228       C 0 I 40
s Mandrillus_sphinx.Contig93                  913649 1 -   9270810 t--------
i Mandrillus_sphinx.Contig93               C 0 I 40
s Miopithecus_ogouensis.k141_69083             11198 1 -     35729 T--------
i Miopithecus_ogouensis.k141_69083         C 0 I 8
s Nasalis_larvatus.k141_1109213                 5462 1 -     15432 t--------
i Nasalis_larvatus.k141_1109213            I 182 I 8
s Pan_paniscus.CM003392.1                  115198067 9 - 138149186 TGCTACCAT
i Pan_paniscus.CM003392.1                  I 182 I 538
s Pan_troglodytes.CM009247.2                88040031 9 - 110513671 TGCTACCAT
i Pan_troglodytes.CM009247.2               I 182 I 565
s Papio_anubis.CM001504.2                   71917310 1 + 124513186 t--------
i Papio_anubis.CM001504.2                  C 0 I 8
s Papio_cynocephalus.k141_3719535               4772 1 +      6274 T--------
i Papio_cynocephalus.k141_3719535          I 215 I 201
s Papio_hamadryas.Contig48                  11402007 1 +  17843046 t--------
i Papio_hamadryas.Contig48                 C 0 I 40
s Papio_kindae.k141_5429907                     2101 1 -     26587 t--------
i Papio_kindae.k141_5429907                C 0 I 137
s Papio_papio.k141_3011620                     17702 1 +     19208 t--------
i Papio_papio.k141_3011620                 I 215 I 201
s Papio_ursinus.k141_1596938                    9694 1 -     18940 T--------
i Papio_ursinus.k141_1596938               C 0 I 242
s Piliocolobus_badius.k141_2497507              6770 1 +     48083 t--------
i Piliocolobus_badius.k141_2497507         I 108 I 8
s Piliocolobus_gordonorum.k141_763911          22715 1 -     32418 t--------
i Piliocolobus_gordonorum.k141_763911      n 41 I 201
s Piliocolobus_kirkii.k141_1278093             87236 1 -    144977 t--------
i Piliocolobus_kirkii.k141_1278093         I 215 I 8
s Piliocolobus_tephrosceles.PDMG02000047.1  44085011 1 +  46020825 t--------
i Piliocolobus_tephrosceles.PDMG02000047.1 n 41 I 201
s Pongo_abelii.CM009264.2                     448805 1 + 129937803 T--------
i Pongo_abelii.CM009264.2                  I 131 I 35
s Pongo_pygmaeus.ctg463                       317494 1 -    482523 T--------
i Pongo_pygmaeus.ctg463                    I 131 I 70
s Presbytis_comata.k141_1477013                10671 1 +     35761 T--------
i Presbytis_comata.k141_1477013            C 0 I 40
s Presbytis_mitrata.k141_2199630               64799 1 -     80097 T--------
i Presbytis_mitrata.k141_2199630           n 41 n 41
s Pygathrix_cinerea.k141_1473548               20159 1 +     26068 t--------
i Pygathrix_cinerea.k141_1473548           C 0 I 195
s Pygathrix_nigripes_b.ctg2                    28527751 1 +  35829140 T--------
i Pygathrix_nigripes_b.ctg2                   I 256 I 544
s Pygathrix_nigripes_a.k141_626429               10728 1 -     17932 T--------
i Pygathrix_nigripes_a.k141_626429           I 108 I 141
s Rhinopithecus_bieti.k119_570255              20343 1 +     23176 t--------
i Rhinopithecus_bieti.k119_570255          I 256 n 41
s Rhinopithecus_roxellana.NC_044549.1       86161352 1 + 206558726 T--------
i Rhinopithecus_roxellana.NC_044549.1      I 256 n 41
s Rhinopithecus_strykeri.ctg6               26886508 1 -  45074249 T--------
i Rhinopithecus_strykeri.ctg6              I 293 I 73
s Semnopithecus_entellus.k141_792991            5679 1 +      5734 T--------
i Semnopithecus_entellus.k141_792991       I 256 n 9
s Semnopithecus_hypoleucos.k141_850753          3466 1 -     10549 t--------
i Semnopithecus_hypoleucos.k141_850753     n 41 I 201
s Semnopithecus_johnii.k141_209824             11914 1 +     14026 t--------
i Semnopithecus_johnii.k141_209824         I 108 I 141
s Semnopithecus_priam.k141_296549              10568 1 +     19847 t--------
i Semnopithecus_priam.k141_296549          C 0 I 40
s Semnopithecus_schistaceus.k141_898418         4438 1 -      5617 T--------
i Semnopithecus_schistaceus.k141_898418    n 41 I 7
s Semnopithecus_vetulus.k141_28520              9757 1 -     32553 t--------
i Semnopithecus_vetulus.k141_28520         C 0 I 40
s Symphalangus_syndactylus.tarseq_252         926755 1 -    984445 T--------
i Symphalangus_syndactylus.tarseq_252      I 220 I 34
s Theropithecus_gelada.CM009952.1          182322415 1 - 183260707 T--------
i Theropithecus_gelada.CM009952.1          I 215 I 8
s Trachypithecus_auratus.k141_1075286           4446 1 -      5743 T--------
i Trachypithecus_auratus.k141_1075286      I 108 I 7
s Trachypithecus_crepusculus.k141_553635       10113 1 -     49581 T--------
i Trachypithecus_crepusculus.k141_553635   C 0 I 40
s Trachypithecus_cristatus.k141_815529          4485 1 -      5857 t--------
i Trachypithecus_cristatus.k141_815529     I 108 I 7
s Trachypithecus_francoisi.k141_162516          9781 1 -     27459 t--------
i Trachypithecus_francoisi.k141_162516     C 0 I 40
s Trachypithecus_geei.k141_304630              14670 1 -     38632 t--------
i Trachypithecus_geei.k141_304630          n 41 I 201
s Trachypithecus_germaini.k141_53511            9739 1 +     34020 T--------
i Trachypithecus_germaini.k141_53511       C 0 I 40
s Trachypithecus_hatinhensis.k141_710675        9527 1 +     19025 t--------
i Trachypithecus_hatinhensis.k141_710675   I 256 I 201
s Trachypithecus_laotum.k141_317791              265 1 +      3021 t--------
i Trachypithecus_laotum.k141_317791        I 131 n 41
s Trachypithecus_leucocephalus.k141_359357      5585 1 +     15007 t--------
i Trachypithecus_leucocephalus.k141_359357 I 108 I 141
s Trachypithecus_melamera.k141_163048           9529 1 -     12058 t--------
i Trachypithecus_melamera.k141_163048      n 41 I 201
s Trachypithecus_obscurus.k141_932129          11865 1 -     19365 t--------
i Trachypithecus_obscurus.k141_932129      C 0 n 0
s Trachypithecus_phayrei.ctg1               24764981 1 -  59489887 T--------
i Trachypithecus_phayrei.ctg1              I 182 I 7
s Trachypithecus_pileatus.k141_1770085         10521 1 -     28608 T--------
i Trachypithecus_pileatus.k141_1770085     C 0 I 40

a score=0.000000
s hg38.chrM                                    12356 35 +     16569 A-----ACC---AC---C---CTAACCC--TGACT----TC----CCTAATTCCCCCCA
s Allenopithecus_nigroviridis.k141_787855      23394 35 -     46693 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Allenopithecus_nigroviridis.k141_787855  I 301 I 31
s Allochrocebus_lhoesti.k141_1513956            7941 35 +     44761 A-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Allochrocebus_lhoesti.k141_1513956       I 116 I 31
s Allochrocebus_preussi.k141_3466725            7958 35 +     53249 G-----GCT---AT---A---ACAGCcc--taatc----cc----cttaatcctactga
i Allochrocebus_preussi.k141_3466725       I 116 I 31
s Allochrocebus_solatus.k141_1967293           11088 32 +     22295 T-----ACC---GT---A---ATAGCCC--TGATC----CC----GTTAACCTTAC---
i Allochrocebus_solatus.k141_1967293       I 9 C 0
s Cercocebus_atys.KQ010367.1                11408048 35 -  11668111 T-----ACT---AT---A---ATAACCT--TAGTC----TC----CTTAACCTTACCAA
i Cercocebus_atys.KQ010367.1               I 8 I 141
s Cercocebus_chrysogaster.k141_1945715         89058 35 -    105757 t-----act---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Cercocebus_chrysogaster.k141_1945715     I 8 I 187
s Cercocebus_lunulatus.k141_5051340             2067 32 +     26539 t-----acc---aT---A---ATAGCCC--TGATC----CC----ATTAACCTTAC---
i Cercocebus_lunulatus.k141_5051340        I 8 C 0
s Cercocebus_torquatus.k141_1852545             5015 35 +     49255 t-----act---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Cercocebus_torquatus.k141_1852545        I 8 I 141
s Cercopithecus_ascanius.k141_1474622           9884 32 -     20001 T-----ACC---AT---A---ATAGCCC--TGATA----CC----GTTAACCTTac---
i Cercopithecus_ascanius.k141_1474622      I 8 C 0
s Cercopithecus_cephus.k141_2404415            10456 32 +     17637 T-----ACC---AT---A---ATAGCCC--TGATC----CC----GTTAACCTTAC---
i Cercopithecus_cephus.k141_2404415        I 8 C 0
s Cercopithecus_diana.k141_2649081              7149 35 -     35932 A-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Cercopithecus_diana.k141_2649081         I 116 I 31
s Cercopithecus_hamlyni.k141_1438795            9747 32 -     20535 t-----acc---at---a---atAGCCC--TGATC----CC----GTTAACCTTAC---
i Cercopithecus_hamlyni.k141_1438795       I 9 C 0
s Cercopithecus_lowei.k141_784555              10115 32 -     18723 t-----aCC---AT---A---ATAGCCC--TGATC----CC----GTTAACctTac---
i Cercopithecus_lowei.k141_784555          I 9 C 0
s Cercopithecus_albogularis.ctg28                 11340374 32 +  15093345 T-----ACC---GT---A---ATAGCCC--TGATC----CC----GTTAACCTTAC---
i Cercopithecus_albogularis.ctg28                I 9 C 0
s Cercopithecus_mona.ctg42                  15303433 35 +  20621893 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Cercopithecus_mona.ctg42                 I 116 I 31
s Cercopithecus_neglectus.k141_2030378          9802 32 -     11116 t-----acc---gt---a---atagccc--tgatc----cc----gttaacctTAC---
i Cercopithecus_neglectus.k141_2030378     I 8 C 0
s Cercopithecus_nictitans.k141_3162920          9492 32 +     18223 T-----ACC---GT---A---ATAGCCC--TGATC----CC----GTTAACCTTAC---
i Cercopithecus_nictitans.k141_3162920     I 9 C 0
s Cercopithecus_petaurista.k141_1586297        10507 32 +     12913 T-----ACC---AT---A---ATAGCCC--TGATC----CC----GTTAACCTTac---
i Cercopithecus_petaurista.k141_1586297    I 9 C 0
s Cercopithecus_pogonias.k141_715341           34466 32 +     35178 t-----acc---gt---a---atagccc--tgatc----cc----gttaaCCTTac---
i Cercopithecus_pogonias.k141_715341       I 8 C 0
s Cercopithecus_roloway.k141_2783013           27948 35 -     43083 A-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Cercopithecus_roloway.k141_2783013       I 8 I 31
s Chlorocebus_aethiops.ctg56                12889175 35 +  17892486 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Chlorocebus_aethiops.ctg56               I 116 I 31
s Chlorocebus_pygerythrus.k141_745568           7702 35 -     98243 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Chlorocebus_pygerythrus.k141_745568      I 301 I 31
s Chlorocebus_sabaeus.CM001947.1            33758086 35 - 135778131 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Chlorocebus_sabaeus.CM001947.1           I 301 I 31
s Colobus_angolensis.KN980429.1              4271159 35 -   6432042 A-----GCT---AC---A---ACAGCCC--TAGTC----CC----CTTAATCCTACCAA
i Colobus_angolensis.KN980429.1            I 117 n 201
s Colobus_guereza.LG01                      35866349 35 - 200372422 G-----GCT---AT---A---ACAGCCC--TAATA----CC----CTTAATCCTACCGA
i Colobus_guereza.LG01                     I 116 I 31
s Colobus_polykomos.k141_1498685                3420 35 -      4776 G-----GCT---AT---A---ACAGCCC--TAATA----CC----CTTAATCCTACCGA
i Colobus_polykomos.k141_1498685           I 116 I 31
s Erythrocebus_patas.Contig40               15741986 35 +  21278523 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACTGA
i Erythrocebus_patas.Contig40              I 116 I 105
s Gorilla_beringei.k141_1529327                16410 39 +     19115 TTTTCCATT---AC---T---ATAAATT--TAATC----TT----CTTAACCTTAC-AA
i Gorilla_beringei.k141_1529327            C 0 I 3
s Lophocebus_aterrimus.ctg47                 6876198 35 -  17053299 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCAA
i Lophocebus_aterrimus.ctg47               I 301 I 108
s Macaca_arctoides.k141_1473862                 5114 35 -     32707 t-----act---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Macaca_arctoides.k141_1473862            n 40 I 317
s Macaca_assamensis.Contig5                 34321899 35 -  60120075 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Macaca_assamensis.Contig5                I 116 I 97
s Macaca_cyclopis.k119_897545                   4122 35 -     10490 T-----ACT---AT---A---ATAACCT--TAGTC----TC----CTTAACCTTACCAA
i Macaca_cyclopis.k119_897545              I 8 I 187
s Macaca_fascicularis.k141_303218              18473 35 +     58069 t-----act---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Macaca_fascicularis.k141_303218          I 191 I 317
s Macaca_fuscata.k119_959180                    5176 35 +     11606 t-----act---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Macaca_fuscata.k119_959180               I 8 I 187
s Macaca_leonina.k141_3706292                  13795 35 -     29935 G-----GCT---at---a---acagccc--taatc----cc----cttaatcctaccga
i Macaca_leonina.k141_3706292              I 116 I 98
s Macaca_maura.k141_1914888                     9707 35 -     25759 G-----GCT---at---a---acagccc--taatc----cc----cttaatcctaccga
i Macaca_maura.k141_1914888                I 301 I 31
s Macaca_mulatta.NC_041756.1                54488134 35 + 185288947 T-----ACT---AT---A---ATAACCT--TAGTC----TC----CTTAACCTTACCAA
i Macaca_mulatta.NC_041756.1               I 8 I 141
s Macaca_nemestrina.KQ005114.1               9180306 35 -   9503891 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Macaca_nemestrina.KQ005114.1             I 116 I 31
s Macaca_nigra.k141_1991806                     5431 35 +     21490 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Macaca_nigra.k141_1991806                I 190 I 98
s Macaca_radiata.k141_501718                    2191 35 +     18260 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Macaca_radiata.k141_501718               I 116 I 98
s Macaca_siberu.k141_1350179                    7526 35 +     23600 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Macaca_siberu.k141_1350179               n 40 I 108
s Macaca_silenus.Contig1                    14194281 35 +  84276269 A-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Macaca_silenus.Contig1                   I 116 I 98
s Macaca_thibetana.k99_645926                   6566 35 +     22580 G-----GCT---AT---A---ATAGCCC--TAATC----CC----CTTAATCCTACCGA
i Macaca_thibetana.k99_645926              I 301 I 108
s Macaca_tonkeana.k141_305781                  16824 35 +     94123 t-----act---aT---A---ATAACCT--TAGTC----TC----CTTAACCTTACCAA
i Macaca_tonkeana.k141_305781              I 8 I 317
s Mandrillus_leucophaeus.scaffold284         9283213 35 -  27319382 G-----GCT---at---a---atagccc--taatc----cc----cttaatcctaccga
i Mandrillus_leucophaeus.scaffold284       I 231 I 31
s Mandrillus_sphinx.Contig7                 14440787 35 +  51421834 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Mandrillus_sphinx.Contig7                I 116 I 31
s Miopithecus_ogouensis.k141_69083             11207 32 -     35729 T-----ACC---GT---A---ATAGCCC--TGATC----CC----GTTAACCTTAC---
i Miopithecus_ogouensis.k141_69083         I 8 C 0
s Nasalis_larvatus.k141_1109213                 5471 35 -     15432 t-----act---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Nasalis_larvatus.k141_1109213            I 8 n 8
s Pan_paniscus.CM003385.1                  131191269 35 + 247869975 T-----ACC---AT---A---ATAACCT--TAATC----TC----CTTAACCTTACCAA
i Pan_paniscus.CM003385.1                  I 132 C 0
s Pan_troglodytes.CM009240.2               110736866 35 - 128755405 t-----acc---at---a---ataacct--taatc----tc----cttaaccttaccaa
i Pan_troglodytes.CM009240.2               I 109 C 0
s Papio_anubis.CM001504.2                   71917319 32 + 124513186 T-----ACC---AT---A---ATAGCCC--TGATC----CC----GTTAACCTTAC---
i Papio_anubis.CM001504.2                  I 8 I 30
s Papio_cynocephalus.k141_3949568               7016 35 -      8346 t-----act---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Papio_cynocephalus.k141_3949568          I 191 I 187
s Papio_hamadryas.Contig36                  14843436 35 +  22161365 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Papio_hamadryas.Contig36                 I 116 I 31
s Papio_kindae.k141_5192634                     5788 35 -      7104 t-----act---at---a---ataacca--tagtc----tc----cttaaccttaccaa
i Papio_kindae.k141_5192634                n 137 I 317
s Papio_papio.k141_2436119                     34698 35 -     56783 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Papio_papio.k141_2436119                 I 116 I 31
s Papio_ursinus.k141_2685680                   11967 35 +     15956 G-----GCT---AT---A---ACAGCcc--taatc----cc----cttaatcctaccga
i Papio_ursinus.k141_2685680               I 116 C 0
s Piliocolobus_badius.k141_2497507              6779 35 +     48083 a-----gct---ac---a---acagccc--taGTC----CC----CTTAATCCTACCAA
i Piliocolobus_badius.k141_2497507         I 8 n 8
s Piliocolobus_gordonorum.k141_1340638          3030 35 +      4657 G-----GCT---AT---A---ACAGCCC--TAATA----CC----CTTAATCCTACCGA
i Piliocolobus_gordonorum.k141_1340638     I 116 I 31
s Piliocolobus_kirkii.k141_1278093             87245 35 -    144977 a-----gct---ac---a---acagccc--tagtc----cc----cttaatcctaccaa
i Piliocolobus_kirkii.k141_1278093         I 8 n 8
s Piliocolobus_tephrosceles.PDMG02000068.1   6528429 35 -  40397039 G-----GCT---AT---A---ACAGCCC--TAATA----CC----CTTAATCCTACCGA
i Piliocolobus_tephrosceles.PDMG02000068.1 I 116 I 31
s Pongo_abelii.CM009283.2                     461466 35 +  34683425 T-----GCC---AT---A---ACAACCT--TAATC----TC----CTTAACCTTACCAA
i Pongo_abelii.CM009283.2                  I 666 I 374
s Pongo_pygmaeus.ctg419                       445431 35 -    484106 T-----GCC---AT---A---ACAACCT--TAATC----TC----CTTAACCTTACCAA
i Pongo_pygmaeus.ctg419                    I 264 C 0
s Presbytis_comata.k141_412011                 13979 35 +     46819 T-----GCT---AT---A---ATAACCT--TAGTC----TC----CTTAACCTTACCAA
i Presbytis_comata.k141_412011             n 40 n 40
s Presbytis_mitrata.k141_2316462               18559 35 +     24743 t-----gct---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Presbytis_mitrata.k141_2316462           n 41 n 41
s Pygathrix_cinerea.k141_573320                  300 35 -      4679 t-----gct---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Pygathrix_cinerea.k141_573320            n 195 n 195
s Pygathrix_nigripes_b.ctg433                     39947 35 +    391023 t-----gct---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Pygathrix_nigripes_b.ctg433                 n 544 n 544
s Pygathrix_nigripes_a.k141_668276                 214 35 -      2595 T-----GCT---AT---A---ATAACCT--TAGTC----TC----CTTAACCTTACCAA
i Pygathrix_nigripes_a.k141_668276           n 141 n 141
s Rhinopithecus_bieti.k119_429275                840 35 +      2923 t-----gct---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Rhinopithecus_bieti.k119_429275          I 191 n 41
s Rhinopithecus_roxellana.NC_044554.1      156083928 35 + 156498330 T-----GCT---AT---A---ATAGCCT--TAGTC----TC----CTTAACCTTACCAA
i Rhinopithecus_roxellana.NC_044554.1      n 41 n 41
s Rhinopithecus_strykeri.ctg312               125246 35 +    598387 t-----gct---at---a---ataacct--tagtc----tc----cttaaccttaccaa
i Rhinopithecus_strykeri.ctg312            n 73 n 73
s Semnopithecus_entellus.k141_1227077          10545 32 -     11780 t-----acc---at---a---atagccc--tgatc----cc----gttaactttac---
i Semnopithecus_entellus.k141_1227077      I 9 C 0
s Semnopithecus_hypoleucos.k141_408925          4544 35 -      7099 g-----gct---at---a---acagccc--taatc----cc----cttaatcctaccga
i Semnopithecus_hypoleucos.k141_408925     n 201 I 31
s Semnopithecus_johnii.k141_806542             13453 35 -     14630 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Semnopithecus_johnii.k141_806542         n 141 I 31
s Semnopithecus_priam.k141_141286              20515 35 +     21797 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Semnopithecus_priam.k141_141286          n 40 n 40
s Semnopithecus_schistaceus.k141_898418         4446 35 -      5617 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Semnopithecus_schistaceus.k141_898418    I 7 I 31
s Semnopithecus_vetulus.k141_649465             4256 35 +      5387 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Semnopithecus_vetulus.k141_649465        n 40 I 31
s Symphalangus_syndactylus.tarseq_341          93406 35 +    759515 T-----ACC---AT---A---ATAACCT--TAATC----TC----cttaacctttcCAA
i Symphalangus_syndactylus.tarseq_341      I 1 n 34
s Theropithecus_gelada.CM009952.1          182322424 35 - 183260707 T-----ACT---AT---A---ATAACCT--TAGTC----TC----CTTAACCTTACCAA
i Theropithecus_gelada.CM009952.1          I 8 I 187
s Trachypithecus_auratus.k141_1075286           4454 35 -      5743 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGa
i Trachypithecus_auratus.k141_1075286      I 7 I 31
s Trachypithecus_crepusculus.k141_1014169       4476 35 +      5849 g-----gct---at---a---acagccc--taatc----cc----cttaatcctaccca
i Trachypithecus_crepusculus.k141_1014169  I 301 I 108
s Trachypithecus_cristatus.k141_815529          4493 35 -      5857 g-----gct---at---a---acagccc--taatc----cc----cttaatcctaccga
i Trachypithecus_cristatus.k141_815529     I 7 I 31
s Trachypithecus_francoisi.k141_1371045         4493 35 -      6347 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Trachypithecus_francoisi.k141_1371045    I 301 n 40
s Trachypithecus_geei.k141_1961552              4604 35 -      7618 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Trachypithecus_geei.k141_1961552         n 201 n 201
s Trachypithecus_germaini.k141_74334            4340 35 -      5905 g-----gct---at---a---acagccc--taatc----cc----cttaatcctaccga
i Trachypithecus_germaini.k141_74334       I 301 I 108
s Trachypithecus_hatinhensis.k141_37173         4339 35 -      5703 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Trachypithecus_hatinhensis.k141_37173    I 116 I 31
s Trachypithecus_laotum.k141_72364              4340 35 -      5710 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Trachypithecus_laotum.k141_72364         I 301 n 41
s Trachypithecus_leucocephalus.k141_754018      5330 35 +      9450 t-----act---at---a---atagcac--taacc----cc----cttaatattaccag
i Trachypithecus_leucocephalus.k141_754018 n 141 I 158
s Trachypithecus_melamera.k141_524806           4584 34 +      5657 ------GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Trachypithecus_melamera.k141_524806      I 190 I 108
s Trachypithecus_obscurus.k141_114580           4494 35 +      5872 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCGA
i Trachypithecus_obscurus.k141_114580      I 190 I 31
s Trachypithecus_phayrei.ctg1               24764989 35 -  59489887 G-----GCT---AT---A---ACAGCCC--TAATC----CC----CTTAATCCTACCCA
i Trachypithecus_phayrei.ctg1              I 7 I 31
s Trachypithecus_pileatus.k141_1341471          4493 35 +      5827 g-----gct---at---a---acagccc--taatc----cc----cttaatcctaccga
i Trachypithecus_pileatus.k141_1341471     n 40 n 40

a score=0.000000
s hg38.chrM                                    12391 31 +     16569 T-CC----TTA---CCACCCTCGTTAACC--CTAAC----AAAAA
s Allenopithecus_nigroviridis.k141_3364170     10371 30 -     35425 --ta----TTA---TTATCTTAACCAACC--TCTAC----Aaaaa
i Allenopithecus_nigroviridis.k141_3364170 I 41 I 67
s Allochrocebus_lhoesti.k141_2600595           44365 30 -     69378 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Allochrocebus_lhoesti.k141_2600595       I 40 I 67
s Allochrocebus_preussi.k141_3734564            9743 30 -     19198 --ta----tta---ttatcttaaccaacc--tctac----aaaaa
i Allochrocebus_preussi.k141_3734564       I 41 I 67
s Allochrocebus_solatus.k141_1967293           11120 30 +     22295 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Allochrocebus_solatus.k141_1967293       C 0 C 0
s Cercocebus_atys.KQ012497.1                13121321 30 -  15015882 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Cercocebus_atys.KQ012497.1               I 41 I 237
s Cercocebus_chrysogaster.k141_569357           2071 30 -     27394 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Cercocebus_chrysogaster.k141_569357      I 41 I 67
s Cercocebus_lunulatus.k141_5051340             2099 30 +     26539 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Cercocebus_lunulatus.k141_5051340        C 0 I 67
s Cercocebus_torquatus.k141_19251              12364 30 -     37166 --ta----TTA---Ttatcttaaccaacc--tctac----aaaaa
i Cercocebus_torquatus.k141_19251          I 41 I 237
s Cercopithecus_ascanius.k141_1474622           9916 30 -     20001 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Cercopithecus_ascanius.k141_1474622      C 0 I 67
s Cercopithecus_cephus.k141_2404415            10488 30 +     17637 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Cercopithecus_cephus.k141_2404415        C 0 C 0
s Cercopithecus_diana.k141_1557666             30209 35 +     50511 T-CA----TTA---CTACCTTAGCCAACc--cctgcaaataaaga
i Cercopithecus_diana.k141_1557666         I 226 n 31
s Cercopithecus_hamlyni.k141_1438795            9779 30 -     20535 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Cercopithecus_hamlyni.k141_1438795       C 0 I 67
s Cercopithecus_lowei.k141_784555              10147 30 -     18723 --ta----TTA---TTATCTTAAGCAACC--TCTAC----AAAAA
i Cercopithecus_lowei.k141_784555          C 0 C 0
s Cercopithecus_albogularis.ctg28                 11340406 30 +  15093345 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Cercopithecus_albogularis.ctg28                C 0 I 67
s Cercopithecus_mona.ctg93                    938284 30 +   9558045 --TA----TTA---TTATCTTAAGCAACC--TCTAC----AAAAA
i Cercopithecus_mona.ctg93                 I 40 I 67
s Cercopithecus_neglectus.k141_2030378          9834 30 -     11116 --TC----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Cercopithecus_neglectus.k141_2030378     C 0 I 67
s Cercopithecus_nictitans.k141_3162920          9524 30 +     18223 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Cercopithecus_nictitans.k141_3162920     C 0 I 67
s Cercopithecus_petaurista.k141_1586297        10539 30 +     12913 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Cercopithecus_petaurista.k141_1586297    C 0 I 67
s Cercopithecus_pogonias.k141_715341           34498 30 +     35178 --ta----TTA---TTatCttaaccaacc--tctac----aaaaa
i Cercopithecus_pogonias.k141_715341       C 0 I 175
s Cercopithecus_roloway.k141_2348395           14215 35 -     24522 t-CA----TTA---CTACCTTAGCCAACC--CCTGCAaataaagA
i Cercopithecus_roloway.k141_2348395       I 226 I 129
s Chlorocebus_aethiops.ctg119                4670674 30 +   8571089 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Chlorocebus_aethiops.ctg119              I 40 I 175
s Chlorocebus_pygerythrus.k141_1337201         11851 30 -     14715 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Chlorocebus_pygerythrus.k141_1337201     I 40 I 67
s Chlorocebus_sabaeus.CM001941.2            72798346 30 + 126035930 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Chlorocebus_sabaeus.CM001941.2           I 40 n 31
s Colobus_angolensis.KN980262.1              5337313 30 -   7104014 --ta----tta---ttatcttAACCAACC--TCTAC----Aaaaa
i Colobus_angolensis.KN980262.1            I 41 C 0
s Colobus_guereza.LG13                      12493885 30 + 131231583 --ta----TTa---ttatCTTAACCAACC--TCTAC----aaaaa
i Colobus_guereza.LG13                     I 41 n 31
s Colobus_polykomos.k141_346247                10547 30 -     17284 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Colobus_polykomos.k141_346247            I 41 n 31
s Erythrocebus_patas.Contig114                871337 30 -   6746984 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Erythrocebus_patas.Contig114             I 40 C 0
s Gorilla_beringei.k141_1529327                16452 25 +     19115 --------------CTACACTAATCAACT--CTCAC----AAGAA
i Gorilla_beringei.k141_1529327            I 3 C 0
s Lophocebus_aterrimus.ctg101                4013868 30 +   8526212 --tA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Lophocebus_aterrimus.ctg101              I 41 C 0
s Macaca_arctoides.k141_416589                  1949 30 -     26632 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_arctoides.k141_416589             I 40 C 0
s Macaca_assamensis.Contig80                  960942 30 +   9119267 --TA----TTA---TTGTCTTAACCAACC--TCTAC----AAAAA
i Macaca_assamensis.Contig80               I 40 C 0
s Macaca_cyclopis.k119_883431                   1876 30 -     12002 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_cyclopis.k119_883431              I 41 C 0
s Macaca_fascicularis.k141_888912                959 34 -     45859 --CAATCATTA---TTACCTTAATTAATC--CCTGC----AAaaa
i Macaca_fascicularis.k141_888912          I 260 C 0
s Macaca_fuscata.k119_1029619                   1884 30 -      2076 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_fuscata.k119_1029619              I 41 C 0
s Macaca_leonina.k141_172241                    2443 30 -     27484 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_leonina.k141_172241               I 40 C 0
s Macaca_maura.k141_1765751                    10031 30 -     48667 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_maura.k141_1765751                I 40 I 68
s Macaca_mulatta.NC_041767.1                74734481 30 + 128056306 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_mulatta.NC_041767.1               I 41 C 0
s Macaca_nemestrina.KQ007637.1              13002761 30 +  21299586 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_nemestrina.KQ007637.1             I 41 n 31
s Macaca_nigra.k141_580096                     31636 30 -     56270 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_nigra.k141_580096                 I 41 C 0
s Macaca_radiata.k141_2031987                   2011 30 +     59341 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_radiata.k141_2031987              I 40 C 0
s Macaca_siberu.k141_204286                    10978 30 +     30583 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_siberu.k141_204286                I 40 C 0
s Macaca_silenus.Contig84                     962638 30 +   9193133 --ta----tta---ttATCTTAACCAACC--TCTAC----Aaaaa
i Macaca_silenus.Contig84                  I 40 C 0
s Macaca_thibetana.k99_674455                   1873 30 -      5098 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_thibetana.k99_674455              I 41 C 0
s Macaca_tonkeana.k141_1979834                  1998 30 +     26550 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Macaca_tonkeana.k141_1979834             I 41 I 68
s Mandrillus_leucophaeus.scaffold228        12685950 30 -  20774610 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Mandrillus_leucophaeus.scaffold228       I 40 I 67
s Mandrillus_sphinx.Contig93                  913690 30 -   9270810 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Mandrillus_sphinx.Contig93               I 40 I 175
s Miopithecus_ogouensis.k141_69083             11239 30 -     35729 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Miopithecus_ogouensis.k141_69083         C 0 C 0
s Nasalis_larvatus.k141_585804                  9868 30 -     37962 --ta----tta---ttatcttaaccaacc--tctac----aaaaa
i Nasalis_larvatus.k141_585804             I 41 C 0
s Pan_paniscus.CM003385.1                  131191304 31 + 247869975 T-TA----TTA---TTACCTTCATAAACC--CTTAC----AAGAA
i Pan_paniscus.CM003385.1                  C 0 C 0
s Pan_troglodytes.CM009240.2               110736901 31 - 128755405 t-ta----tta---ttaccttcataaacc--cttac----aagaa
i Pan_troglodytes.CM009240.2               C 0 C 0
s Papio_anubis.CM001495.2                   34020192 37 - 183742232 TATA----CTGAATTAACCAGAACCAACTGTTCTGC----AAAAT
i Papio_anubis.CM001495.2                  I 155 I 68
s Papio_cynocephalus.k141_2026657              10106 30 +     45296 --ta----tta---ttATCTTAACCAACC--TCTAC----AAAaa
i Papio_cynocephalus.k141_2026657          I 41 C 0
s Papio_hamadryas.Contig48                  11402048 30 +  17843046 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Papio_hamadryas.Contig48                 I 40 I 175
s Papio_kindae.k141_2318205                    17669 31 -     48934 T-TA----CTG---TTACCTTAGCCAACT--TCTGC----AAAAT
i Papio_kindae.k141_2318205                I 266 C 0
s Papio_papio.k141_1575386                      9419 30 +     19082 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Papio_papio.k141_1575386                 I 41 I 172
s Papio_ursinus.k141_2685680                   12002 31 +     15956 t-ta----ctg---ttaccttagccaact--tctgc----aaaat
i Papio_ursinus.k141_2685680               C 0 C 0
s Piliocolobus_badius.k141_1515087              4454 30 -     29604 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Piliocolobus_badius.k141_1515087         I 41 n 8
s Piliocolobus_gordonorum.k141_345746           2197 30 +     63902 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Piliocolobus_gordonorum.k141_345746      I 41 I 67
s Piliocolobus_kirkii.k141_72784               10066 30 -     35819 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Piliocolobus_kirkii.k141_72784           I 41 I 67
s Piliocolobus_tephrosceles.PDMG02000249.1   5373208 30 -  11423478 --ta----tta---ttatcttaaCCAACC--TCTAC----AAAAA
i Piliocolobus_tephrosceles.PDMG02000249.1 I 41 n 31
s Pongo_abelii.CM009264.2                     448841 31 + 129937803 T-TA----TTA---TTACCTTCATCAACC--cttac----aagaa
i Pongo_abelii.CM009264.2                  I 35 I 67
s Pongo_pygmaeus.ctg419                       445466 31 -    484106 T-TA----TTA---TTACCTTCATCAACC--CTTAC----AAGAA
i Pongo_pygmaeus.ctg419                    C 0 I 224
s Presbytis_comata.k141_1477013                10712 30 +     35761 --TA----TTA---TTATCTTAACCAATC--TCTAC----AAAAA
i Presbytis_comata.k141_1477013            I 40 C 0
s Presbytis_mitrata.k141_315593                10394 30 -     13532 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Presbytis_mitrata.k141_315593            I 41 n 41
s Pygathrix_cinerea.k141_1655762               10853 30 +     56938 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Pygathrix_cinerea.k141_1655762           I 172 C 0
s Pygathrix_nigripes_b.ctg275                   1005796 30 -   1164381 --ta----tta---ttatcttaaccaacc--tctac----aaaaa
i Pygathrix_nigripes_b.ctg275                 I 41 C 0
s Pygathrix_nigripes_a.k141_1226842               8838 30 -     18851 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAaa
i Pygathrix_nigripes_a.k141_1226842          I 41 C 0
s Rhinopithecus_bieti.k119_193647               2027 30 -     21440 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Rhinopithecus_bieti.k119_193647          I 41 n 41
s Rhinopithecus_roxellana.NC_044563.1       80415947 30 - 130852392 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Rhinopithecus_roxellana.NC_044563.1      I 41 I 129
s Rhinopithecus_strykeri.ctg107               988901 30 +   9417851 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Rhinopithecus_strykeri.ctg107            I 41 n 73
s Semnopithecus_entellus.k141_1227077          10577 30 -     11780 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Semnopithecus_entellus.k141_1227077      C 0 C 0
s Semnopithecus_hypoleucos.k141_2227288         6668 30 +     16381 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Semnopithecus_hypoleucos.k141_2227288    I 41 n 31
s Semnopithecus_johnii.k141_1605039             9783 30 -     20764 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Semnopithecus_johnii.k141_1605039        I 41 n 31
s Semnopithecus_priam.k141_296549              10609 30 +     19847 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Semnopithecus_priam.k141_296549          I 40 C 0
s Semnopithecus_schistaceus.k141_1024652        6648 30 -     31631 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Semnopithecus_schistaceus.k141_1024652   I 41 n 31
s Semnopithecus_vetulus.k141_28520              9798 30 -     32553 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Semnopithecus_vetulus.k141_28520         I 40 I 67
s Symphalangus_syndactylus.tarseq_252         926790 31 -    984445 T-TA----TTA---TTACCTTCATCAACC--cttac----aagaa
i Symphalangus_syndactylus.tarseq_252      I 34 I 1807
s Theropithecus_gelada.CM009964.1           73630762 30 + 126097711 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Theropithecus_gelada.CM009964.1          I 41 I 237
s Trachypithecus_auratus.k141_266101           11250 30 +     29438 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_auratus.k141_266101       I 41 n 31
s Trachypithecus_crepusculus.k141_553635       10154 30 -     49581 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_crepusculus.k141_553635   I 40 C 0
s Trachypithecus_cristatus.k141_1002979        15406 30 +     32958 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_cristatus.k141_1002979    I 41 n 31
s Trachypithecus_francoisi.k141_162516          9822 30 -     27459 --ta----TTA---TTATCTTAACCAACC--TCTAC----Aaaaa
i Trachypithecus_francoisi.k141_162516     I 40 C 0
s Trachypithecus_geei.k141_1225101             10535 30 +     37797 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_geei.k141_1225101         I 41 C 0
s Trachypithecus_germaini.k141_53511            9780 30 +     34020 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_germaini.k141_53511       I 40 C 0
s Trachypithecus_hatinhensis.k141_651250        8971 30 -     26520 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_hatinhensis.k141_651250   I 41 n 31
s Trachypithecus_laotum.k141_68479              9783 30 -     27453 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_laotum.k141_68479         I 41 C 0
s Trachypithecus_leucocephalus.k141_31838       9788 30 +     10993 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_leucocephalus.k141_31838  I 41 n 158
s Trachypithecus_melamera.k141_199184           2112 30 +     12574 --CA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_melamera.k141_199184      I 41 C 0
s Trachypithecus_obscurus.k141_58437            9800 30 -     34268 --ta----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_obscurus.k141_58437       n 31 n 31
s Trachypithecus_phayrei.ctg59              10331944 30 +  18758866 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_phayrei.ctg59             I 41 n 31
s Trachypithecus_pileatus.k141_1770085         10562 30 -     28608 --TA----TTA---TTATCTTAACCAACC--TCTAC----AAAAA
i Trachypithecus_pileatus.k141_1770085     I 40 C 0

a score=0.000000
s hg38.chrM                                    12422 67 +     16569 A-A-ACT-CATACCCCCATTATGT---AAAATCCATTG------TCGCATCCACC-TTTATTATCAGTCTCTTC--C---CC--ACA
s Allenopithecus_nigroviridis.k141_787855      23460 67 -     46693 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Allenopithecus_nigroviridis.k141_787855  I 31 I 10
s Allochrocebus_lhoesti.k141_1513956            8007 67 +     44761 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-Ttcatcattagcctcatc--c---ca--aca
i Allochrocebus_lhoesti.k141_1513956       I 31 I 7
s Allochrocebus_preussi.k141_3466725            8024 67 +     53249 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Allochrocebus_preussi.k141_3466725       I 31 I 7
s Allochrocebus_solatus.k141_1967293           11150 67 +     22295 A-G-GTT-TATACCCAAATTACGT---AAAAATATCTA------TCACATGCACA-TTCATCATTAGCCTTATC--C---CT--ACA
i Allochrocebus_solatus.k141_1967293       C 0 C 0
s Cercocebus_atys.KQ010939.1                29209885 67 +  29793205 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Cercocebus_atys.KQ010939.1               I 182 C 0
s Cercocebus_chrysogaster.k141_129667          30716 67 -     34785 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Cercocebus_chrysogaster.k141_129667      I 182 I 7
s Cercocebus_lunulatus.k141_1448852             7131 67 -     50786 A-G-GCT-CAtacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Cercocebus_lunulatus.k141_1448852        I 182 I 10
s Cercocebus_torquatus.k141_301629              7216 67 -     11288 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcatcagcctcatc--c---ca--aca
i Cercocebus_torquatus.k141_301629         I 256 C 0
s Cercopithecus_ascanius.k141_395955             705 67 +     10858 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Cercopithecus_ascanius.k141_395955       n 67 I 7
s Cercopithecus_cephus.k141_2404415            10518 67 +     17637 A-G-GTT-TATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTTATC--C---CT--ACA
i Cercopithecus_cephus.k141_2404415        C 0 C 0
s Cercopithecus_diana.k141_2649081              7215 67 -     35932 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCAtcattagcctcatc--c---ca--aca
i Cercopithecus_diana.k141_2649081         I 31 I 10
s Cercopithecus_hamlyni.k141_1438427            5008 67 -     46742 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Cercopithecus_hamlyni.k141_1438427       I 182 I 10
s Cercopithecus_lowei.k141_784555              10177 67 -     18723 A-G-GTT-TATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTTATC--C---CT--ACA
i Cercopithecus_lowei.k141_784555          C 0 I 108
s Cercopithecus_albogularis.ctg5                  34210632 67 -  39242232 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Cercopithecus_albogularis.ctg5                 n 67 I 10
s Cercopithecus_mona.ctg42                  15303499 67 +  20621893 A-G-GCT-GATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---ca--aca
i Cercopithecus_mona.ctg42                 I 31 I 7
s Cercopithecus_neglectus.k141_2633140         10116 67 -     57664 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Cercopithecus_neglectus.k141_2633140     I 367 I 10
s Cercopithecus_nictitans.k141_131260           1223 67 +      8556 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TTGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Cercopithecus_nictitans.k141_131260      n 67 I 10
s Cercopithecus_petaurista.k141_1954245         1611 67 -     33246 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACATGCC-TTCATCATTAGCCTCATC--C---ca--aca
i Cercopithecus_petaurista.k141_1954245    n 67 I 7
s Cercopithecus_pogonias.k141_2349534          12486 67 +     31427 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTcatcattagcctcatc--c---ca--aca
i Cercopithecus_pogonias.k141_2349534      I 330 I 7
s Cercopithecus_roloway.k141_2783013           28014 67 -     43083 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Cercopithecus_roloway.k141_2783013       I 31 I 10
s Chlorocebus_aethiops.ctg56                12889241 67 +  17892486 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-Ttcatcattagcctcatc--c---ca--aca
i Chlorocebus_aethiops.ctg56               I 31 I 7
s Chlorocebus_pygerythrus.k141_745568           7768 67 -     98243 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---ca--aca
i Chlorocebus_pygerythrus.k141_745568      I 31 I 7
s Chlorocebus_sabaeus.CM001947.1            33758152 67 - 135778131 a-g-gct-catacccaAATTATGT---AAAAACATCTA------TCGCACGTGCC-Ttcatcattagcctcatc--c---ca--aca
i Chlorocebus_sabaeus.CM001947.1           I 31 I 7
s Colobus_angolensis.KN980262.1              5337343 67 -   7104014 a-g-gtt-catacccaaattacgt---aaaaatatcta------tcgcatgcaca-ttcatcattagtctcatc--c---ct--aca
i Colobus_angolensis.KN980262.1            C 0 C 0
s Colobus_guereza.LG01                      35866415 67 - 200372422 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Colobus_guereza.LG01                     I 31 C 0
s Colobus_polykomos.k141_1498685                3486 67 -      4776 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Colobus_polykomos.k141_1498685           I 31 C 0
s Erythrocebus_patas.Contig114                871367 67 -   6746984 A-G-GTT-TATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTTATC--C---CT--ACA
i Erythrocebus_patas.Contig114             C 0 C 0
s Gorilla_beringei.k141_1529327                16477 64 +     19115 -----CT-CATATCCATATCACGT---AAAAATATCTA------CTGTATGCACC-TTCACCATTAGCTTCATT--C---CC--ACA
i Gorilla_beringei.k141_1529327            C 0 I 1
s Lophocebus_aterrimus.ctg101                4013898 67 +   8526212 A-G-GTT-TATACCCAAATTATGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTTATC--C---CT--ACA
i Lophocebus_aterrimus.ctg101              C 0 C 0
s Macaca_arctoides.k141_416589                  1979 68 -     26632 AAG-GTT-TATACCCAAATTATGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_arctoides.k141_416589             C 0 C 0
s Macaca_assamensis.Contig80                  960972 68 +   9119267 AAG-GTT-TATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_assamensis.Contig80               C 0 I 108
s Macaca_cyclopis.k119_883431                   1906 68 -     12002 AAG-GTT-TATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_cyclopis.k119_883431              C 0 I 170
s Macaca_fascicularis.k141_888912                993 67 -     45859 a-g-gTT-CATACCCAAATTATGT---AAAAATATCTA------TCACATGCACT-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_fascicularis.k141_888912          C 0 C 0
s Macaca_fuscata.k119_1029619                   1914 68 -      2076 AAG-GTT-TATACCCAAATTATGT---AAAAATATCTA------TTGCATGCACA-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_fuscata.k119_1029619              C 0 n 0
s Macaca_leonina.k141_172241                    2473 68 -     27484 AAG-GTT-TATATCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_leonina.k141_172241               C 0 I 108
s Macaca_maura.k141_1914888                     9773 67 -     25759 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aaa
i Macaca_maura.k141_1914888                I 31 I 10
s Macaca_mulatta.NC_041767.1                74734511 68 + 128056306 AAG-GTT-TATATCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_mulatta.NC_041767.1               C 0 I 170
s Macaca_nemestrina.KQ005114.1               9180372 67 -   9503891 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--AAA
i Macaca_nemestrina.KQ005114.1             I 31 C 0
s Macaca_nigra.k141_580096                     31666 68 -     56270 AAG-GTT-TATATCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_nigra.k141_580096                 C 0 I 108
s Macaca_radiata.k141_2031987                   2041 68 +     59341 AAG-GTT-TATACCCAAATTATGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_radiata.k141_2031987              C 0 I 108
s Macaca_siberu.k141_204286                    11008 68 +     30583 AAG-GTT-TATATCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_siberu.k141_204286                C 0 C 0
s Macaca_silenus.Contig84                     962668 68 +   9193133 aag-gtt-tatatccaaattacgt---aaaaatatcta------tcgcatgcaca-ttcatcattagcctcatc--c---ct--aca
i Macaca_silenus.Contig84                  C 0 I 108
s Macaca_thibetana.k99_674455                   1903 68 -      5098 AAG-GTT-TATACCCAAATTATGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTCATC--C---CT--ACA
i Macaca_thibetana.k99_674455              C 0 C 0
s Macaca_tonkeana.k141_2069709                 16425 67 +     32421 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcgtc--c---ca--aaa
i Macaca_tonkeana.k141_2069709             I 367 I 10
s Mandrillus_leucophaeus.scaffold284         9283279 67 -  27319382 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Mandrillus_leucophaeus.scaffold284       I 31 I 10
s Mandrillus_sphinx.Contig7                 14440853 67 +  51421834 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Mandrillus_sphinx.Contig7                I 31 C 0
s Miopithecus_ogouensis.k141_69083             11269 67 -     35729 A-G-GTT-TATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGCCTTATC--C---CT--ACA
i Miopithecus_ogouensis.k141_69083         C 0 C 0
s Nasalis_larvatus.k141_585804                  9898 67 -     37962 a-g-gtt-catacccaaattacgt---aaaaatatcta------tcgcatgcaca-ttcatcattagtctcatc--c---ct--aca
i Nasalis_larvatus.k141_585804             C 0 C 0
s Pan_paniscus.CM003385.1                  131191335 67 + 247869975 G-A-ACT-CGTACccatattacat---aaaaatagcTA------TCGCATGcacc-ttcaccattagcctcatt--c---cc--aca
i Pan_paniscus.CM003385.1                  C 0 C 0
s Pan_troglodytes.CM009240.2               110736932 67 - 128755405 g-a-act-cgtacccatattacgt---aaaaatagcta------tcgcatgcacc-ttcaccattagcctcatt--c---cc--aca
i Pan_troglodytes.CM009240.2               C 0 C 0
s Papio_anubis.CM001504.2                   71917381 67 + 124513186 A-G-GTT-TATActcaaattatgt---aaaaatatcta------TCGCATGCACA-TTCATCATTAGCCTTATC--C---CT--ACA
i Papio_anubis.CM001504.2                  I 30 I 10
s Papio_cynocephalus.k141_2026657              10136 67 +     45296 a-g-gtt-tatactcaaattatgt---aaaaatatcta------tcgcatgcaca-ttcatcattagccttatc--c---ct--aCA
i Papio_cynocephalus.k141_2026657          C 0 C 0
s Papio_hamadryas.Contig36                  14843502 67 +  22161365 A-G-GCT-Catacccaaattatgt---aaaaacatcta------tcgcacatgcc-ttcatcattagcctcatc--c---ca--aca
i Papio_hamadryas.Contig36                 I 31 C 0
s Papio_kindae.k141_2318205                    17700 67 -     48934 A-G-GCT-CAtacccaaattatgt---aaaaacatcta------tcgcacatgcc-ttcatcattagcctcatc--c---ca--aca
i Papio_kindae.k141_2318205                C 0 I 10
s Papio_papio.k141_2436119                     34764 67 -     56783 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacatgcc-ttcatcattagcctcatc--c---ca--aca
i Papio_papio.k141_2436119                 I 31 C 0
s Papio_ursinus.k141_2685680                   12033 67 +     15956 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacatgcc-ttcatcattagcctcatc--c---ca--aca
i Papio_ursinus.k141_2685680               C 0 C 0
s Piliocolobus_badius.k141_1674576              3122 67 -      4572 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCATGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Piliocolobus_badius.k141_1674576         I 365 C 0
s Piliocolobus_gordonorum.k141_1340638          3096 67 +      4657 A-G-Gct-catacccaaattatgt---aaaaacatcta------tcgcatgtgcc-ttcatcattagcctcatc--c---ca--aca
i Piliocolobus_gordonorum.k141_1340638     I 31 I 10
s Piliocolobus_kirkii.k141_304712               3482 67 -     65669 A-G-GCT-CATACCCAAATTATGT---AAAaacatcta------tcgcatgtgcc-ttcatcattagcctcatc--c---ca--aca
i Piliocolobus_kirkii.k141_304712          I 182 I 10
s Piliocolobus_tephrosceles.PDMG02000068.1   6528495 67 -  40397039 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCATGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Piliocolobus_tephrosceles.PDMG02000068.1 I 31 C 0
s Pongo_abelii.KZ622949.1                    3632433 64 +   3740455 -----CT-CGTATCCATATTACGT---AAAAATATCTA------TCGCATGCACC-TTCACCATTAGcctcatt--c---cc--aca
i Pongo_abelii.KZ622949.1                  I 253 I 62
s Pongo_pygmaeus.ctg463                       317565 64 -    482523 -----CT-CGTATCCATATTACGT---AAAAATATCTA------TCGCATGCACC-TTCACCATTAGCCTCATT--C---cc--aca
i Pongo_pygmaeus.ctg463                    I 70 I 62
s Presbytis_comata.k141_1477013                10742 67 +     35761 A-G-GTT-CATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGTCTCATC--C---CT--ACA
i Presbytis_comata.k141_1477013            C 0 C 0
s Presbytis_mitrata.k141_1109549                4009 67 +      7485 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTT------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Presbytis_mitrata.k141_1109549           n 41 C 0
s Pygathrix_cinerea.k141_1655762               10883 67 +     56938 A-G-GTT-Catacccaaattatgt---aaaaatatcta------tcgcatgcaca-ttcatcattagtctcatc--c---ct--aCA
i Pygathrix_cinerea.k141_1655762           C 0 C 0
s Pygathrix_nigripes_b.ctg275                   1005826 67 -   1164381 a-g-gtt-catacccaaattatgt---aaaaatatcta------tcgcatgcaca-ttcatcattagtctcatc--c---ct--aca
i Pygathrix_nigripes_b.ctg275                 C 0 n 0
s Pygathrix_nigripes_a.k141_1226842               8868 67 -     18851 a-g-gtt-catacccaaattatgt---aaaaatatcta------tcgcatgcaca-ttcatcattagtctcatc--c---ct--acA
i Pygathrix_nigripes_a.k141_1226842          C 0 n 0
s Rhinopithecus_bieti.k119_1149192             20798 67 -     22148 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Rhinopithecus_bieti.k119_1149192         I 367 n 41
s Rhinopithecus_roxellana.NC_044550.1      134183462 67 - 195417433 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Rhinopithecus_roxellana.NC_044550.1      I 256 C 0
s Rhinopithecus_strykeri.ctg6               26886582 67 -  45074249 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCTCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Rhinopithecus_strykeri.ctg6              I 73 C 0
s Semnopithecus_entellus.k141_1227077          10607 67 -     11780 A-G-GTT-CATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGTCTCATC--C---CT--ACA
i Semnopithecus_entellus.k141_1227077      C 0 C 0
s Semnopithecus_hypoleucos.k141_408925          4610 67 -      7099 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Semnopithecus_hypoleucos.k141_408925     I 31 C 0
s Semnopithecus_johnii.k141_806542             13519 67 -     14630 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Semnopithecus_johnii.k141_806542         I 31 n 31
s Semnopithecus_priam.k141_296549              10639 67 +     19847 A-G-GTT-Catacccaaattacgt---aaaaatatcta------tcgcatgcaca-ttcatcattagtctcatc--c---ct--aca
i Semnopithecus_priam.k141_296549          C 0 C 0
s Semnopithecus_schistaceus.k141_898418         4512 67 -      5617 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Semnopithecus_schistaceus.k141_898418    I 31 C 0
s Semnopithecus_vetulus.k141_649465             4322 67 +      5387 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---ca--aca
i Semnopithecus_vetulus.k141_649465        I 31 n 67
s Symphalangus_syndactylus.tarseq_719          49026 67 -     94135 G-A-ACT-CGTACCCATATTACGT---AAAAATAGCTA------TTGCATGCACC-TTCACCATTAGCCTCATA--C---CC--ACA
i Symphalangus_syndactylus.tarseq_719      I 727 n 1807
s Theropithecus_gelada.CM009954.1           34437717 67 - 186847797 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCACACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Theropithecus_gelada.CM009954.1          I 182 C 0
s Trachypithecus_auratus.k141_1075286           4520 67 -      5743 a-g-gct-catacccaaattatgt---aaaaacatcta------tcgcacgtgcc-ttcatcattagcctcatc--c---ca--aca
i Trachypithecus_auratus.k141_1075286      I 31 C 0
s Trachypithecus_crepusculus.k141_553635       10184 67 -     49581 A-G-GTT-CATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGTCTCATC--C---CT--ACA
i Trachypithecus_crepusculus.k141_553635   C 0 C 0
s Trachypithecus_cristatus.k141_815529          4559 67 -      5857 a-g-gct-catacccaaattatgt---aaaaacatcta------tCGCACGtgcc-ttcatcattagcctcatc--c---ca--aca
i Trachypithecus_cristatus.k141_815529     I 31 C 0
s Trachypithecus_francoisi.k141_162516          9852 67 -     27459 a-g-gtt-catacccaaattacgt---aaaaatatcta------tcgcatgcaca-ttcatcattagtctcatc--c---ct--aca
i Trachypithecus_francoisi.k141_162516     C 0 C 0
s Trachypithecus_geei.k141_1225101             10565 67 +     37797 A-G-GTT-CATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGTCTCATC--C---CT--ACA
i Trachypithecus_geei.k141_1225101         C 0 n 0
s Trachypithecus_germaini.k141_53511            9810 67 +     34020 A-G-GTT-CATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGTCTCATC--C---CT--ACA
i Trachypithecus_germaini.k141_53511       C 0 C 0
s Trachypithecus_hatinhensis.k141_37173         4405 67 -      5703 a-g-gct-catacccaaattatgt---aaaaacatcta------tCGCACGtgcc-ttcatcattagcctcatc--c---ca--aca
i Trachypithecus_hatinhensis.k141_37173    I 31 C 0
s Trachypithecus_laotum.k141_68479              9813 67 -     27453 A-G-GTT-CATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGTCTCATC--C---CT--ACA
i Trachypithecus_laotum.k141_68479         C 0 n 0
s Trachypithecus_leucocephalus.k141_45550       4406 67 +     21951 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-ttcatcattagcCTCATC--C---CA--ACA
i Trachypithecus_leucocephalus.k141_45550  I 256 n 158
s Trachypithecus_melamera.k141_199184           2142 67 +     12574 A-G-GTT-CATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGTCTCATC--C---CT--ACA
i Trachypithecus_melamera.k141_199184      C 0 n 0
s Trachypithecus_obscurus.k141_114580           4560 67 +      5872 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGtgcc-ttcatcattagcctcatc--c---ca--aca
i Trachypithecus_obscurus.k141_114580      I 31 C 0
s Trachypithecus_phayrei.ctg1               24765055 67 -  59489887 A-G-GCT-CATACCCAAATTATGT---AAAAACATCTA------TCGCACGTGCC-TTCATCATTAGCCTCATC--C---CA--ACA
i Trachypithecus_phayrei.ctg1              I 31 C 0
s Trachypithecus_pileatus.k141_1770085         10592 67 -     28608 A-G-GTT-CATACCCAAATTACGT---AAAAATATCTA------TCGCATGCACA-TTCATCATTAGTCTCATC--C---CT--ACA
i Trachypithecus_pileatus.k141_1770085     C 0 C 0

a score=0.000000
s hg38.chrM                                    12489 10 +     16569 A-------CAA---TA--TTC-------A
s Allenopithecus_nigroviridis.k141_3364170     10468 10 -     35425 a-------CAA---TG--TTT-------A
i Allenopithecus_nigroviridis.k141_3364170 I 67 I 160
s Allochrocebus_lhoesti.k141_2600595           44462 10 -     69378 A-------CAA---TG--TTT-------A
i Allochrocebus_lhoesti.k141_2600595       I 67 I 98
s Allochrocebus_preussi.k141_3734564            9840 10 -     19198 a-------caA---TG--TTT-------A
i Allochrocebus_preussi.k141_3734564       I 67 I 98
s Allochrocebus_solatus.k141_1967293           11217 10 +     22295 A-------CAA---TG--TTT-------A
i Allochrocebus_solatus.k141_1967293       C 0 C 0
s Cercocebus_atys.KQ010939.1                29209952 10 +  29793205 A-------CAA---TG--TTT-------A
i Cercocebus_atys.KQ010939.1               C 0 C 0
s Cercocebus_chrysogaster.k141_569357           2168 10 -     27394 A-------CAA---TG--TTT-------A
i Cercocebus_chrysogaster.k141_569357      I 67 I 160
s Cercocebus_lunulatus.k141_5051340             2196 10 +     26539 A-------CAA---TG--TTT-------A
i Cercocebus_lunulatus.k141_5051340        I 67 I 98
s Cercocebus_torquatus.k141_301629              7283 10 -     11288 a-------caa---tg--ttt-------a
i Cercocebus_torquatus.k141_301629         C 0 C 0
s Cercopithecus_ascanius.k141_1474622          10013 10 -     20001 A-------CAA---TG--TTT-------A
i Cercopithecus_ascanius.k141_1474622      I 67 I 98
s Cercopithecus_cephus.k141_2404415            10585 10 +     17637 A-------CAA---TG--TTT-------A
i Cercopithecus_cephus.k141_2404415        C 0 I 98
s Cercopithecus_diana.k141_1147129             15040 10 +     57904 A-------CAA---TG--TTT-------A
i Cercopithecus_diana.k141_1147129         I 137 I 98
s Cercopithecus_hamlyni.k141_1438795            9876 10 -     20535 A-------CAA---TG--TTT-------A
i Cercopithecus_hamlyni.k141_1438795       I 67 I 98
s Cercopithecus_lowei.k141_3362039               675 13 -      3644 a-------caacaatg--ttt-------a
i Cercopithecus_lowei.k141_3362039         I 138 I 194
s Cercopithecus_albogularis.ctg28                 11340503 10 +  15093345 A-------CAA---TG--TTT-------A
i Cercopithecus_albogularis.ctg28                I 67 I 98
s Cercopithecus_mona.ctg93                    938381 10 +   9558045 A-------CAA---TG--TTT-------A
i Cercopithecus_mona.ctg93                 I 67 I 98
s Cercopithecus_neglectus.k141_2030378          9931 10 -     11116 A-------CAA---TG--TTT-------A
i Cercopithecus_neglectus.k141_2030378     I 67 I 98
s Cercopithecus_nictitans.k141_3162920          9621 10 +     18223 A-------CAA---TG--TTT-------A
i Cercopithecus_nictitans.k141_3162920     I 67 I 98
s Cercopithecus_petaurista.k141_1586297        10636 10 +     12913 A-------CAA---TG--TTT-------A
i Cercopithecus_petaurista.k141_1586297    I 67 I 98
s Cercopithecus_pogonias.k141_1128599             87 13 +      1109 a-------caacaatg--ttt-------a
i Cercopithecus_pogonias.k141_1128599      n 7 I 194
s Cercopithecus_roloway.k141_3125301            5327 10 -      7894 A-------CAA---TG--TTT-------A
i Cercopithecus_roloway.k141_3125301       I 269 I 160
s Chlorocebus_aethiops.ctg370                 296709 11 +   1769383 ------------------TTTAACCGAGA
i Chlorocebus_aethiops.ctg370              n 7 n 7
s Chlorocebus_pygerythrus.k141_1337201         11948 10 -     14715 A-------CAA---GG--TTT-------A
i Chlorocebus_pygerythrus.k141_1337201     I 67 I 98
s Chlorocebus_sabaeus.KE148060.1              172380  6 +    254123 A-------CAA---TG-------------
i Chlorocebus_sabaeus.KE148060.1           n 7 I 196
s Colobus_angolensis.KN980262.1              5337410 10 -   7104014 a-------CAA---TG--TTT-------A
i Colobus_angolensis.KN980262.1            C 0 n 0
s Colobus_guereza.LG01                      35866482 10 - 200372422 A-------CAA---TG--TTT-------A
i Colobus_guereza.LG01                     C 0 N 0
s Colobus_polykomos.k141_1498685                3553 10 -      4776 A-------CAA---TG--TTT-------A
i Colobus_polykomos.k141_1498685           C 0 n 0
s Erythrocebus_patas.Contig114                871434 10 -   6746984 A-------CAA---TG--TTT-------A
i Erythrocebus_patas.Contig114             C 0 I 98
s Gorilla_beringei.k141_1529327                16542  6 +     19115 --------------TG--TTT-------G
i Gorilla_beringei.k141_1529327            I 1 C 0
s Lophocebus_aterrimus.ctg101                4013965 10 +   8526212 A-------CAA---TG--TTT-------A
i Lophocebus_aterrimus.ctg101              C 0 I 98
s Macaca_arctoides.k141_416589                  2047 10 -     26632 A-------CAA---TG--TTT-------A
i Macaca_arctoides.k141_416589             C 0 C 0
s Macaca_assamensis.Contig5                 34322031 10 -  60120075 a-------caa---tg--ttt-------a
i Macaca_assamensis.Contig5                I 97 C 0
s Macaca_cyclopis.k119_512377                   5564 10 +     21625 A-------CAa---tg--ttt-------a
i Macaca_cyclopis.k119_512377              I 249 C 0
s Macaca_fascicularis.k141_888912               1060 10 -     45859 A-------CAA---TG--TTT-------A
i Macaca_fascicularis.k141_888912          C 0 I 98
s Macaca_fuscata.k119_609323                    9998 10 -     25971 a-------caa---tg--ttt-------a
i Macaca_fuscata.k119_609323               I 249 C 0
s Macaca_leonina.k141_3706292                  13928 10 -     29935 a-------caa---tg--ttt-------a
i Macaca_leonina.k141_3706292              I 98 C 0
s Macaca_maura.k141_1765751                    10129 10 -     48667 A-------CAA---TG--TTT-------A
i Macaca_maura.k141_1765751                I 68 I 98
s Macaca_mulatta.NC_041758.1                34259330 10 - 187317192 A-------CAA---TG--TTT-------A
i Macaca_mulatta.NC_041758.1               I 249 C 0
s Macaca_nemestrina.KQ005114.1               9180439 10 -   9503891 A-------CAA---TG--TTT-------A
i Macaca_nemestrina.KQ005114.1             C 0 C 0
s Macaca_nigra.k141_1991806                     5564 10 +     21490 A-------CAA---TG--TTT-------A
i Macaca_nigra.k141_1991806                I 98 C 0
s Macaca_radiata.k141_501718                    2324 10 +     18260 a-------caa---tg--ttt-------a
i Macaca_radiata.k141_501718               I 98 C 0
s Macaca_siberu.k141_204286                    11076 10 +     30583 A-------CAA---TG--TTT-------A
i Macaca_siberu.k141_204286                C 0 I 98
s Macaca_silenus.Contig1                    14194414 10 +  84276269 a-------caa---tg--ttt-------a
i Macaca_silenus.Contig1                   I 98 C 0
s Macaca_thibetana.k99_674455                   1971 10 -      5098 A-------CAA---TG--TTT-------A
i Macaca_thibetana.k99_674455              C 0 I 160
s Macaca_tonkeana.k141_1979834                  2096 10 +     26550 A-------CAA---TG--TTT-------A
i Macaca_tonkeana.k141_1979834             I 68 I 160
s Mandrillus_leucophaeus.scaffold228        12686047 10 -  20774610 A-------CAA---TG--TTT-------A
i Mandrillus_leucophaeus.scaffold228       I 67 I 98
s Mandrillus_sphinx.Contig7                 14440920 10 +  51421834 A-------CAA---TG--TTT-------A
i Mandrillus_sphinx.Contig7                C 0 C 0
s Miopithecus_ogouensis.k141_69083             11336 10 -     35729 A-------CAA---TG--TTT-------A
i Miopithecus_ogouensis.k141_69083         C 0 C 0
s Nasalis_larvatus.k141_585804                  9965 10 -     37962 a-------caa---tg--ttt-------a
i Nasalis_larvatus.k141_585804             C 0 n 0
s Pan_paniscus.CM003385.1                  131191402 10 + 247869975 a-------caa---tg--ttt-------a
i Pan_paniscus.CM003385.1                  C 0 C 0
s Pan_troglodytes.CM009240.2               110736999 10 - 128755405 a-------caa---tg--ttt-------a
i Pan_troglodytes.CM009240.2               C 0 C 0
s Papio_anubis.CM001495.2                   34020297 11 - 183742232 A-------CAA--ATG--TTT-------A
i Papio_anubis.CM001495.2                  I 68 I 54
s Papio_cynocephalus.k141_2026657              10203 10 +     45296 A-------CAA---TG--TTT-------A
i Papio_cynocephalus.k141_2026657          C 0 I 160
s Papio_hamadryas.Contig36                  14843569 10 +  22161365 a-------caa---tg--ttt-------a
i Papio_hamadryas.Contig36                 C 0 C 0
s Papio_kindae.k141_5429907                     2239  6 -     26587 A-------CAA---TG-------------
i Papio_kindae.k141_5429907                I 137 I 102
s Papio_papio.k141_2436119                     34831 10 -     56783 a-------caa---tg--ttt-------a
i Papio_papio.k141_2436119                 C 0 C 0
s Papio_ursinus.k141_2685680                   12100 10 +     15956 a-------caa---tg--ttt-------a
i Papio_ursinus.k141_2685680               C 0 C 0
s Piliocolobus_badius.k141_1674576              3189 10 -      4572 A-------CAA---TG--TTT-------A
i Piliocolobus_badius.k141_1674576         C 0 C 0
s Piliocolobus_gordonorum.k141_345746           2294 10 +     63902 A-------CAA---TG--TTT-------A
i Piliocolobus_gordonorum.k141_345746      I 67 n 10
s Piliocolobus_kirkii.k141_72784               10163 10 -     35819 A-------CAA---TG--TTT-------A
i Piliocolobus_kirkii.k141_72784           I 67 n 10
s Piliocolobus_tephrosceles.PDMG02000068.1   6528562 10 -  40397039 A-------CAA---TG--TTT-------A
i Piliocolobus_tephrosceles.PDMG02000068.1 C 0 C 0
s Pongo_abelii.CM009264.2                     448939 10 + 129937803 a-------caa---tg--ttt-------a
i Pongo_abelii.CM009264.2                  I 67 I 147
s Pongo_pygmaeus.ctg22                         45296 10 +  44630897 a-------caa---tg--ttt-------a
i Pongo_pygmaeus.ctg22                     I 134 C 0
s Presbytis_comata.k141_1477013                10809 10 +     35761 A-------CAA---TG--TTT-------A
i Presbytis_comata.k141_1477013            C 0 n 0
s Presbytis_mitrata.k141_1109549                4076 10 +      7485 A-------CAA---TG--TTT-------A
i Presbytis_mitrata.k141_1109549           C 0 C 0
s Pygathrix_cinerea.k141_1655762               10950 10 +     56938 A-------CAA---TG--TTT-------A
i Pygathrix_cinerea.k141_1655762           C 0 I 98
s Pygathrix_nigripes_b.ctg5                    24984406 10 -  59994118 a-------caa---tg--ttt-------a
i Pygathrix_nigripes_b.ctg5                   I 323 C 0
s Pygathrix_nigripes_a.k141_626429               10870 10 -     17932 a-------caa---tg--ttt-------a
i Pygathrix_nigripes_a.k141_626429           I 141 C 0
s Rhinopithecus_bieti.k119_488595               3922 10 +      6941 a-------caa---tg--ttt-------a
i Rhinopithecus_bieti.k119_488595          I 250 C 0
s Rhinopithecus_roxellana.NC_044550.1      134183529 10 - 195417433 A-------CAA---TG--TTT-------A
i Rhinopithecus_roxellana.NC_044550.1      C 0 n 0
s Rhinopithecus_strykeri.ctg6               26886649 10 -  45074249 A-------CAA---TG--TTT-------A
i Rhinopithecus_strykeri.ctg6              C 0 n 0
s Semnopithecus_entellus.k141_1227077          10674 10 -     11780 A-------CAA---TG--TTT-------A
i Semnopithecus_entellus.k141_1227077      C 0 n 0
s Semnopithecus_hypoleucos.k141_408925          4677 10 -      7099 a-------caa---tg--ttt-------a
i Semnopithecus_hypoleucos.k141_408925     C 0 C 0
s Semnopithecus_johnii.k141_209824             12056 10 +     14026 a-------caa---tg--ttt-------a
i Semnopithecus_johnii.k141_209824         I 141 C 0
s Semnopithecus_priam.k141_296549              10706 10 +     19847 a-------CAA---TG--TTT-------A
i Semnopithecus_priam.k141_296549          C 0 n 0
s Semnopithecus_schistaceus.k141_898418         4579 10 -      5617 A-------CAA---TG--TTT-------A
i Semnopithecus_schistaceus.k141_898418    C 0 C 0
s Semnopithecus_vetulus.k141_28520              9895 10 -     32553 A-------CAA---TG--TTT-------A
i Semnopithecus_vetulus.k141_28520         I 67 n 67
s Symphalangus_syndactylus.tarseq_159        7807231 10 -   7865082 A-------CAA---TG--TTT-------A
i Symphalangus_syndactylus.tarseq_159      I 343 n 1807
s Theropithecus_gelada.CM009954.1           34437784 10 - 186847797 A-------CAA---TG--TTT-------A
i Theropithecus_gelada.CM009954.1          C 0 C 0
s Trachypithecus_auratus.k141_1075286           4587 10 -      5743 a-------caa---tg--ttt-------a
i Trachypithecus_auratus.k141_1075286      C 0 C 0
s Trachypithecus_crepusculus.k141_553635       10251 10 -     49581 A-------CAA---TG--TTT-------A
i Trachypithecus_crepusculus.k141_553635   C 0 n 0
s Trachypithecus_cristatus.k141_815529          4626 10 -      5857 a-------caa---tg--ttT-------A
i Trachypithecus_cristatus.k141_815529     C 0 C 0
s Trachypithecus_francoisi.k141_162516          9919 10 -     27459 a-------caA---TG--TTT-------A
i Trachypithecus_francoisi.k141_162516     C 0 n 0
s Trachypithecus_geei.k141_963886              11982 10 +     21425 a-------caa---tg--ttt-------a
i Trachypithecus_geei.k141_963886          I 250 C 0
s Trachypithecus_germaini.k141_53511            9877 10 +     34020 A-------CAA---TG--TTT-------A
i Trachypithecus_germaini.k141_53511       C 0 n 0
s Trachypithecus_hatinhensis.k141_37173         4472 10 -      5703 a-------caa---tg--ttt-------a
i Trachypithecus_hatinhensis.k141_37173    C 0 C 0
s Trachypithecus_laotum.k141_1230304           18388 10 +     27545 a-------caa---tg--ttt-------a
i Trachypithecus_laotum.k141_1230304       I 250 C 0
s Trachypithecus_leucocephalus.k141_359357      5727 10 +     15007 a-------caa---tg--ttt-------a
i Trachypithecus_leucocephalus.k141_359357 I 141 C 0
s Trachypithecus_melamera.k141_782462           4263 10 -      4373 a-------caa---tg--ttt-------a
i Trachypithecus_melamera.k141_782462      I 250 n 0
s Trachypithecus_obscurus.k141_114580           4627 10 +      5872 a-------caa---tg--ttt-------a
i Trachypithecus_obscurus.k141_114580      C 0 C 0
s Trachypithecus_phayrei.ctg1               24765122 10 -  59489887 A-------CAA---TG--TTT-------A
i Trachypithecus_phayrei.ctg1              C 0 C 0
s Trachypithecus_pileatus.k141_1770085         10659 10 -     28608 A-------CAA---TG--TTT-------A
i Trachypithecus_pileatus.k141_1770085     C 0 I 52

a score=0.000000
s hg38.chrM                                    12499 55 +     16569 TGTGCCT------AG-ACCA---------AGAAG---TTA---TTATCTC-GAACTGACACTGA-------GCC---AC-AACCC-----AAA---C
s Allenopithecus_nigroviridis.k141_787855      23537 55 -     46693 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGACATTGA-------ATG---AC-GATCC-----AAA---C
i Allenopithecus_nigroviridis.k141_787855  I 10 C 0
s Allochrocebus_lhoesti.k141_1513956            8081 55 +     44761 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGACATTGA-------ATG---ac-gatCC-----AAA---C
i Allochrocebus_lhoesti.k141_1513956       I 7 C 0
s Allochrocebus_preussi.k141_3466725            8098 55 +     53249 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacactga-------atg---ac-gatcc-----aaa---c
i Allochrocebus_preussi.k141_3466725       I 7 C 0
s Allochrocebus_solatus.k141_1967293           11227 52 +     22295 AATGCAC------AG-GCCA---------ATAAG---TC------AACTC-AAACTGACATTGA-------ATG---AC-AATCC-----AAA---C
i Allochrocebus_solatus.k141_1967293       C 0 C 0
s Cercocebus_atys.KQ010939.1                29209962 55 +  29793205 TATGCAC------AG-ACCA---------AGAAG---TCA---TTATCTC-AAACTGACATTGA-------ATG---AC-GATCC-----AAA---C
i Cercocebus_atys.KQ010939.1               C 0 I 64
s Cercocebus_chrysogaster.k141_129667          30790 55 -     34785 TATGCAC------Ag-acca---------agaag---tca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Cercocebus_chrysogaster.k141_129667      I 7 I 64
s Cercocebus_lunulatus.k141_1448852             7208 55 -     50786 tatgcac------ag-acca---------agaag---tca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Cercocebus_lunulatus.k141_1448852        I 10 I 64
s Cercocebus_torquatus.k141_301629              7293 55 -     11288 tatgcac------ag-acca---------agaag---tca---ttatctc-aaactgacaTTAA-------ATG---AC-GATCC-----AAA---C
i Cercocebus_torquatus.k141_301629         C 0 I 64
s Cercopithecus_ascanius.k141_395955             779 55 +     10858 TATGCAC------AG-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Cercopithecus_ascanius.k141_395955       I 7 C 0
s Cercopithecus_cephus.k141_294495              2242 55 -      5583 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Cercopithecus_cephus.k141_294495         n 98 C 0
s Cercopithecus_diana.k141_2649081              7292 55 -     35932 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Cercopithecus_diana.k141_2649081         I 10 C 0
s Cercopithecus_hamlyni.k141_1438427            5085 55 -     46742 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Cercopithecus_hamlyni.k141_1438427       I 10 I 64
s Cercopithecus_lowei.k141_1304160              2505 55 -      4275 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCtc-aaactgacaTTGA-------ATG---AC-GAACC-----AAA---C
i Cercopithecus_lowei.k141_1304160         I 404 I 64
s Cercopithecus_albogularis.ctg5                  34210709 55 -  39242232 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacaTTGA-------ATG---AC-AATCC-----AAA---C
i Cercopithecus_albogularis.ctg5                 I 10 I 92
s Cercopithecus_mona.ctg42                  15303573 55 +  20621893 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGACATTGA-------ATG---AC-gaACC-----AAA---C
i Cercopithecus_mona.ctg42                 I 7 I 64
s Cercopithecus_neglectus.k141_2633140         10193 55 -     57664 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Cercopithecus_neglectus.k141_2633140     I 10 I 64
s Cercopithecus_nictitans.k141_131260           1300 55 +      8556 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGACATTGA-------ATG---AC-GATCC-----AAA---C
i Cercopithecus_nictitans.k141_131260      I 10 C 0
s Cercopithecus_petaurista.k141_1954245         1685 55 -     33246 TATGCAC------Ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---C
i Cercopithecus_petaurista.k141_1954245    I 7 C 0
s Cercopithecus_pogonias.k141_2349534          12560 55 +     31427 TATGCAC------ag-acca---------agaag---cca---ttatctc-aaactgacaTtga-------atg---ac-gatcc-----aaa---c
i Cercopithecus_pogonias.k141_2349534      I 7 I 64
s Cercopithecus_roloway.k141_2783013           28091 55 -     43083 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Cercopithecus_roloway.k141_2783013       I 10 I 64
s Chlorocebus_aethiops.ctg56                12889315 55 +  17892486 TATGCAC------Ag-acca---------agAAG---CCA---TTATCTC-AAACTGacaTTGA-------ATG---AC-GATCC-----AAA---C
i Chlorocebus_aethiops.ctg56               I 7 I 64
s Chlorocebus_pygerythrus.k141_745568           7842 55 -     98243 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGACATTGA-------ATG---AC-GATCC-----AAA---C
i Chlorocebus_pygerythrus.k141_745568      I 7 I 64
s Chlorocebus_sabaeus.CM001947.1            33758226 55 - 135778131 TATGCAC------Ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Chlorocebus_sabaeus.CM001947.1           I 7 I 64
s Colobus_angolensis.KN983729.1             32407403 55 +  35326507 TATGCAC------AG-ACAA---------AGAAG---CCA---TTATCTC-AAACTGATATTGA-------ATG---AC-GATCC-----AGA---C
i Colobus_angolensis.KN983729.1            I 441 n 0
s Colobus_guereza.LG09                      83280766 55 - 145964134 tatgcac------ag-acca---------agaag---tca---ttatctc-aaactgacattga-------atg---at-gatcc-----aga---a
i Colobus_guereza.LG09                     N 0 N 0
s Colobus_polykomos.k141_1234023                7401 55 +     47276 tatgcac------ag-acca---------agaag---tca---ttatctc-aaactgacattga-------atg---at-gatcc-----aga---a
i Colobus_polykomos.k141_1234023           I 367 n 0
s Erythrocebus_patas.Contig40               15742126 55 +  21278523 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-GATCC-----AAA---C
i Erythrocebus_patas.Contig40              I 105 C 0
s Gorilla_beringei.k141_1529327                16548 55 +     19115 TGTATAT------AG-ACCA---------AGAAG---CGA---TCATCTC-AAACTGATATGGA-------ATA---AC-AATCC-----AAA---C
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg47                 6876341 55 -  17053299 TATGCAC------AG-ACCA---------AGaag---tca---ttatctc-aaactgacaTTGA-------ATG---AC-GATCC-----AAA---C
i Lophocebus_aterrimus.ctg47               I 108 I 64
s Macaca_arctoides.k141_416589                  2057 52 -     26632 TATGTAC------AG-GCCA---------GTAag---tc------atctc-aaactgacattga-------atg---ag-aatcc-----aaa---c
i Macaca_arctoides.k141_416589             C 0 I 46
s Macaca_assamensis.Contig5                 34322041 55 -  60120075 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Macaca_assamensis.Contig5                C 0 I 64
s Macaca_cyclopis.k119_512377                   5574 55 +     21625 tatgcac------ag-aCCA---------AGAAG---CCA---TTATCTC-AAACTGACATTGA-------ATG---AC-GATCC-----AAA---C
i Macaca_cyclopis.k119_512377              C 0 I 64
s Macaca_fascicularis.k141_747886              24165 55 +     40098 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Macaca_fascicularis.k141_747886          I 259 I 92
s Macaca_fuscata.k119_609323                   10008 55 -     25971 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Macaca_fuscata.k119_609323               C 0 I 64
s Macaca_leonina.k141_3706292                  13938 55 -     29935 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Macaca_leonina.k141_3706292              C 0 I 64
s Macaca_maura.k141_1914888                     9850 55 -     25759 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Macaca_maura.k141_1914888                I 10 I 64
s Macaca_mulatta.NC_041758.1                34259340 53 - 187317192 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-A--CTGACATTGA-------ATG---AC-GATCC-----AAA---C
i Macaca_mulatta.NC_041758.1               C 0 I 64
s Macaca_nemestrina.KQ005114.1               9180449 55 -   9503891 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGACATTGA-------ATG---AC-GATCC-----AAA---C
i Macaca_nemestrina.KQ005114.1             C 0 I 64
s Macaca_nigra.k141_1991806                     5574 55 +     21490 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGACATTGA-------ATG---AC-GATCC-----AAA---C
i Macaca_nigra.k141_1991806                C 0 I 64
s Macaca_radiata.k141_501718                    2334 55 +     18260 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Macaca_radiata.k141_501718               C 0 I 64
s Macaca_siberu.k141_1350179                    7669 55 +     23600 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAactgacattga-------atg---ac-gatcc-----aaa---c
i Macaca_siberu.k141_1350179               I 108 I 64
s Macaca_silenus.Contig1                    14194424 55 +  84276269 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Macaca_silenus.Contig1                   C 0 I 64
s Macaca_thibetana.k99_645926                   6709 55 +     22580 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Macaca_thibetana.k99_645926              I 108 I 92
s Macaca_tonkeana.k141_2069709                 16502 55 +     32421 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Macaca_tonkeana.k141_2069709             I 10 I 64
s Mandrillus_leucophaeus.scaffold284         9283356 55 -  27319382 tatgcac------ag-acca---------agaag---tca---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Mandrillus_leucophaeus.scaffold284       I 10 I 64
s Mandrillus_sphinx.Contig7                 14440930 55 +  51421834 TATGCAC------AG-ACCA---------AGAAG---TCA---TTATCTC-AAACTGACATTGA-------ATG---AC-GATCC-----AAA---C
i Mandrillus_sphinx.Contig7                C 0 C 0
s Miopithecus_ogouensis.k141_69083             11346 52 -     35729 TATGTAC------AG-GCCA---------ATAAG---tc------atcTC-AAACTGACATTGA-------ATG---ac-aatcc-----aaa---c
i Miopithecus_ogouensis.k141_69083         C 0 I 46
s Nasalis_larvatus.k141_915577                  3906 55 -      7098 tatgcac------ag-acca---------agaag---tca---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Nasalis_larvatus.k141_915577             I 260 n 0
s Pan_paniscus.CM003385.1                  131191412 55 + 247869975 tatatac------ag-acca---------ataac---cca---tcatctc-aaactgatattga-------ata---ac-aatcc-----aaa---c
i Pan_paniscus.CM003385.1                  C 0 I 88
s Pan_troglodytes.CM009240.2               110737009 55 - 128755405 tatctac------ag-acca---------ataac---cca---tcatctc-aaactgatattga-------ata---ac-aatcc-----aaa---c
i Pan_troglodytes.CM009240.2               C 0 I 88
s Papio_anubis.CM001504.2                   71917458 52 + 124513186 TATGTAC------AA-GCCA---------ATAAG---TC------ATCTC-AAACTGACATTGA-------ATG---AC-AATCC-----AAA---C
i Papio_anubis.CM001504.2                  I 10 I 46
s Papio_cynocephalus.k141_1747982               1745 55 +     16929 tatgcac------ag-acca---------agaag---tcg---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Papio_cynocephalus.k141_1747982          I 444 I 64
s Papio_hamadryas.Contig36                  14843579 55 +  22161365 tatgcac------ag-acca---------agaag---tcg---ttatctc-aaactgacattga-------atg---at-gatcc-----aaa---c
i Papio_hamadryas.Contig36                 C 0 C 0
s Papio_kindae.k141_2318205                    17777 55 -     48934 tatgcac------ag-acca---------agaat---tcg---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Papio_kindae.k141_2318205                I 10 I 64
s Papio_papio.k141_2436119                     34841 55 -     56783 tatgcac------ag-acca---------agaag---tcg---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Papio_papio.k141_2436119                 C 0 I 64
s Papio_ursinus.k141_2685680                   12110 55 +     15956 tatgcac------ag-acca---------agaag---tcg---ttatctc-aaactgacattga-------atg---ac-gatcc-----aaa---c
i Papio_ursinus.k141_2685680               C 0 I 64
s Piliocolobus_badius.k141_1674576              3199 55 -      4572 TATGCAC------AG-ATCA---------AGAAG---CCA---TTATCTC-AAACTGATATTGA-------ATG---AC-GATCC-----AGA---C
i Piliocolobus_badius.k141_1674576         C 0 n 0
s Piliocolobus_gordonorum.k141_1340638          3173 55 +      4657 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgatattga-------atg---ac-gatcc-----aga---c
i Piliocolobus_gordonorum.k141_1340638     I 10 n 10
s Piliocolobus_kirkii.k141_304712               3559 55 -     65669 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgatattga-------atg---at-gatcc-----aga---c
i Piliocolobus_kirkii.k141_304712          I 10 n 10
s Piliocolobus_tephrosceles.PDMG02000068.1   6528572 55 -  40397039 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGATATTGA-------ATG---AC-GATCC-----AGA---C
i Piliocolobus_tephrosceles.PDMG02000068.1 C 0 n 0
s Pongo_abelii.CM009269.2                  128598606 55 - 145408105 TGTATAT------AG-ACCA---------AGAAG---CCA---TCATCTC-AAACTGATATTGA-------ATA---AC-AATCC-----aaa---c
i Pongo_abelii.CM009269.2                  I 142 I 45
s Pongo_pygmaeus.ctg22                         45306 55 +  44630897 tatatac------ag-acca---------ataac---cca---tcatctc-aaactgatactga-------ata---ac-aatcc-----aaa---c
i Pongo_pygmaeus.ctg22                     C 0 n 0
s Presbytis_comata.k141_1347401                12067 55 +     13139 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGATATTGA-------ATG---AC-GATCC-----AGA---C
i Presbytis_comata.k141_1347401            n 0 I 46
s Presbytis_mitrata.k141_1109549                4086 55 +      7485 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGATATTGA-------ATG---AC-GATCC-----AGA---C
i Presbytis_mitrata.k141_1109549           C 0 I 46
s Pygathrix_cinerea.k141_1497385                5589 55 -      6643 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgatattga-------atg---ac-gatcc-----aga---c
i Pygathrix_cinerea.k141_1497385           n 98 n 98
s Pygathrix_nigripes_b.ctg5                    24984416 55 -  59994118 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgatattga-------atg---ac-gatcc-----aga---c
i Pygathrix_nigripes_b.ctg5                   C 0 n 0
s Pygathrix_nigripes_a.k141_626429               10880 55 -     17932 tatgcac------ag-acca---------agaag---tca---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Pygathrix_nigripes_a.k141_626429           C 0 C 0
s Rhinopithecus_bieti.k119_488595               3932 55 +      6941 tatgcac------ag-acca---------agaag---tca---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Rhinopithecus_bieti.k119_488595          C 0 C 0
s Rhinopithecus_roxellana.NC_044555.1       47662671 55 - 154578354 tatgcac------ag-acca---------agaag---tca---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Rhinopithecus_roxellana.NC_044555.1      I 260 I 46
s Rhinopithecus_strykeri.ctg20              25379913 55 +  26372126 tatgcaC------Ag-acca---------AGaag---tca---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Rhinopithecus_strykeri.ctg20             I 260 C 0
s Semnopithecus_entellus.k141_439698            2887 55 -     12026 TATGCAC------AG-ACCA---------AGAAG---TCa---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Semnopithecus_entellus.k141_439698       I 261 N 0
s Semnopithecus_hypoleucos.k141_408925          4687 55 -      7099 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgatattga-------atg---ac-gatcc-----aga---c
i Semnopithecus_hypoleucos.k141_408925     C 0 n 0
s Semnopithecus_johnii.k141_209824             12066 55 +     14026 tatgcac------ag-acca---------agaag---tca---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Semnopithecus_johnii.k141_209824         C 0 N 0
s Semnopithecus_priam.k141_254402              11084 55 -     20235 TATGCAC------AG-ACCA---------AGAAG---TCA---TTATCTC-AAACCGACATTGA-------ATG---AC-AATTC-----AAA---C
i Semnopithecus_priam.k141_254402          I 260 N 0
s Semnopithecus_schistaceus.k141_898418         4589 55 -      5617 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGATATTGA-------ATG---AC-GATCC-----AGA---C
i Semnopithecus_schistaceus.k141_898418    C 0 N 0
s Semnopithecus_vetulus.k141_357222            31617 55 +     37979 TATGCAC------AG-ACCA---------AGAAG---TCA---TTATCTC-AAACCGACATTGA-------ATG---AC-AATTC-----AAA---C
i Semnopithecus_vetulus.k141_357222        I 260 N 0
s Symphalangus_syndactylus.tarseq_252         928628 23 -    984445 ----------------------------------------------------------CACAGA-------ATCCTCAC-AAACC-----AAC---C
i Symphalangus_syndactylus.tarseq_252      I 1807 N 0
s Theropithecus_gelada.CM009954.1           34437794 55 - 186847797 TATGCAC------AG-ACCA---------AGAAT---TCA---TTATCTC-AAACTGACATTGA-------ATG---AC-GATCC-----AAA---C
i Theropithecus_gelada.CM009954.1          C 0 I 64
s Trachypithecus_auratus.k141_1075286           4597 55 -      5743 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgatattga-------atg---ac-gatcc-----aga---c
i Trachypithecus_auratus.k141_1075286      C 0 N 0
s Trachypithecus_crepusculus.k141_1014169       4619 55 +      5849 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgatattga-------atg---ac-gatcc-----aga---c
i Trachypithecus_crepusculus.k141_1014169  I 108 N 0
s Trachypithecus_cristatus.k141_815529          4636 55 -      5857 TATGCAC------AG-ACCA---------AGaag---cca---ttatctc-aaactgatattga-------atg---ac-gatcc-----aga---c
i Trachypithecus_cristatus.k141_815529     C 0 N 0
s Trachypithecus_francoisi.k141_971175         11949 55 +     23988 tatgcac------ag-acca---------agaag---tca---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Trachypithecus_francoisi.k141_971175     I 367 N 0
s Trachypithecus_geei.k141_963886              11992 55 +     21425 tatgcac------ag-acca---------agaag---tca---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Trachypithecus_geei.k141_963886          C 0 n 0
s Trachypithecus_germaini.k141_74334            4483 55 -      5905 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgatattga-------atg---ac-gatcc-----aga---c
i Trachypithecus_germaini.k141_74334       I 108 N 0
s Trachypithecus_hatinhensis.k141_37173         4482 55 -      5703 tatgcac------ag-acca---------agaag---cca---ttatctc-aaactgatattga-------atg---ac-gatcc-----aga---c
i Trachypithecus_hatinhensis.k141_37173    C 0 n 0
s Trachypithecus_laotum.k141_1230304           18398 55 +     27545 tatgcac------ag-acca---------agaag---tca---ttatctc-aaaccgacattga-------atg---ac-aatTC-----AAA---C
i Trachypithecus_laotum.k141_1230304       C 0 N 0
s Trachypithecus_leucocephalus.k141_359357      5737 55 +     15007 tatgcac------ag-acca---------agaag---tca---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Trachypithecus_leucocephalus.k141_359357 C 0 n 0
s Trachypithecus_melamera.k141_524806           4726 55 +      5657 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAactgATATTGA-------ATG---AC-GATCC-----AGA---C
i Trachypithecus_melamera.k141_524806      I 108 n 0
s Trachypithecus_obscurus.k141_114580           4637 55 +      5872 tatgcac------ag-acca---------agaag---cca---ttatctC-AAACTGATATtga-------atg---ac-gatcc-----aga---c
i Trachypithecus_obscurus.k141_114580      C 0 N 0
s Trachypithecus_phayrei.ctg1               24765132 55 -  59489887 TATGCAC------AG-ACCA---------AGAAG---CCA---TTATCTC-AAACTGATATTGA-------ATG---AC-GATCC-----AGA---C
i Trachypithecus_phayrei.ctg1              C 0 N 0
s Trachypithecus_pileatus.k141_1977800         12052 55 -     42176 tatgcac------ag-acca---------agaag---tca---ttatctc-aaaccgacattga-------atg---ac-aattc-----aaa---c
i Trachypithecus_pileatus.k141_1977800     I 260 n 52

a score=0.000000
s hg38.chrM                                   12554 46 +     16569 AACCCAGCTC--TCCC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
s Allenopithecus_nigroviridis.k141_787855     23592 46 -     46693 TCTCAAACTC--TCAC--TA-----AGCTTCA---AACTAGACTACTTCTCCACAAA---A
i Allenopithecus_nigroviridis.k141_787855  C 0 I 165
s Allochrocebus_lhoesti.k141_1513956           8136 46 +     44761 TCTCAAACCC--TCAC--TA-----AGCTTCA---AACTAGACTACTTCTCCACAAA---A
i Allochrocebus_lhoesti.k141_1513956       C 0 I 18
s Allochrocebus_preussi.k141_3466725           8153 46 +     53249 tctcaaactc--tcac--ta-----agcttca---aactagactacttctccacaaa---a
i Allochrocebus_preussi.k141_3466725       C 0 I 18
s Allochrocebus_solatus.k141_1967293          11279 46 +     22295 TCTTAAACTC--TCAC--TA-----AGCTTCA---GACTACACTACTCCTCCACAAT---G
i Allochrocebus_solatus.k141_1967293       C 0 C 0
s Cercocebus_atys.KQ010367.1               11408224 46 -  11668111 CCTTAAACTC--TCAC--TA-----AACTTCA---AACTAGACTACTTCTCCATAAA---A
i Cercocebus_atys.KQ010367.1               I 141 C 0
s Cercocebus_chrysogaster.k141_2266635         2328 46 -      3328 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Cercocebus_chrysogaster.k141_2266635     n 64 n 64
s Cercocebus_lunulatus.k141_4864552            1498 46 -     47348 CCTTAAACTC--TCAC--TA-----AACTTCA---AACTAGACTACTTCTCCATAAA---A
i Cercocebus_lunulatus.k141_4864552        n 64 I 130
s Cercocebus_torquatus.k141_1852545            5191 46 +     49255 CCTTAAACTC--TCAC--TA-----AACTTCA---AACTAGACTACTTCTCCATAAA---A
i Cercocebus_torquatus.k141_1852545        I 141 C 0
s Cercopithecus_ascanius.k141_395955            834 46 +     10858 tctcaaactc--tcac--ta-----agcttca---aactagactacttctccacaaa---a
i Cercopithecus_ascanius.k141_395955       C 0 I 18
s Cercopithecus_cephus.k141_294495             2297 46 -      5583 tctcaaagtc--tcac--ta-----agcttca---aactagactacttctccacaaa---a
i Cercopithecus_cephus.k141_294495         C 0 I 18
s Cercopithecus_diana.k141_2649081             7347 46 -     35932 tctcaaactc--tcac--ta-----agcttca---aactagactacttctccacaaa---a
i Cercopithecus_diana.k141_2649081         C 0 I 18
s Cercopithecus_hamlyni.k141_163049           10743 46 +     13474 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Cercopithecus_hamlyni.k141_163049        I 201 n 64
s Cercopithecus_lowei.k141_1756225             2439 46 +      8732 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Cercopithecus_lowei.k141_1756225         n 64 n 64
s Cercopithecus_albogularis.ctg631                  22023 46 -     59035 CCTCAAACTC--TCAT--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Cercopithecus_albogularis.ctg631               n 92 I 18
s Cercopithecus_mona.ctg514                   38674 46 +     73056 tcttaaactc--tgac--ta-----agcttca---aactagactacttctccataat---a
i Cercopithecus_mona.ctg514                n 64 n 64
s Cercopithecus_neglectus.k141_2114713        10982 46 -     30844 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Cercopithecus_neglectus.k141_2114713     n 64 n 64
s Cercopithecus_nictitans.k141_131260          1355 46 +      8556 TCTCAAACTC--TCAC--TA-----AGCTTCA---AACTAGACTACTTCTCCACAAA---A
i Cercopithecus_nictitans.k141_131260      C 0 I 18
s Cercopithecus_petaurista.k141_1954245        1740 46 -     33246 TCTCAAACTC--TCAC--TA-----AGCTTCA---AACTAGACTACTTCTCCACAAA---A
i Cercopithecus_petaurista.k141_1954245    C 0 I 18
s Cercopithecus_pogonias.k141_953790           9461 46 +     12831 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Cercopithecus_pogonias.k141_953790       I 465 n 64
s Cercopithecus_roloway.k141_2348395          14379 46 -     24522 tcctaaactc--tcac--ta-----AGCTTCA---aaCtagacTACTTCTCCACAAT---A
i Cercopithecus_roloway.k141_2348395       I 129 C 0
s Chlorocebus_aethiops.ctg903                  3919 46 +     75429 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Chlorocebus_aethiops.ctg903              n 64 n 64
s Chlorocebus_pygerythrus.k141_3618620          134 46 +     31637 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Chlorocebus_pygerythrus.k141_3618620     n 64 n 64
s Chlorocebus_sabaeus.CM001941.2           80962930 46 + 126035930 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Chlorocebus_sabaeus.CM001941.2           n 64 n 64
s Colobus_angolensis.KN980207.1             6635473 46 -   6947193 tcttaaactc--taag--ta-----agcttca---aactagactacttctccataat---a
i Colobus_angolensis.KN980207.1            I 201 C 0
s Colobus_guereza.ContigUN                 11638509 46 +  34923435 tcttaaactc--taag--ta-----agcttca---aactagactacttctccataat---a
i Colobus_guereza.ContigUN                 N 0 C 0
s Colobus_polykomos.k141_1644896               8238 46 -     13251 TCTTAAACTC--TAAG--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Colobus_polykomos.k141_1644896           I 201 I 46
s Erythrocebus_patas.Contig40              15742181 46 +  21278523 TCTCAAACTC--TCAC--TA-----AGCTTCA---AACTAGACTACTTCTCCACAAA---A
i Erythrocebus_patas.Contig40              C 0 I 18
s Gorilla_beringei.k141_1529327               16603 45 +     19115 -CTTAATCTC--TCAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAA---A
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg4240                  675 46 +     16837 TCTTAAACTC--TAAC--TA-----AGCTTCA---AActagactacttctccataat---a
i Lophocebus_aterrimus.ctg4240             I 201 I 46
s Macaca_arctoides.k141_2426372                3785 46 -      4166 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Macaca_arctoides.k141_2426372            n 46 n 46
s Macaca_assamensis.Contig690                  1849 46 -     20234 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_assamensis.Contig690              n 64 n 64
s Macaca_cyclopis.k119_383723                  3336 46 +      4334 TCTTaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_cyclopis.k119_383723              I 417 n 64
s Macaca_fascicularis.k141_1015154             3785 46 +      4757 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTacttctccatAAT---A
i Macaca_fascicularis.k141_1015154         n 92 n 92
s Macaca_fuscata.k119_770391                    783 46 -      1412 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_fuscata.k119_770391               I 457 n 64
s Macaca_leonina.k141_2053078                  2750 46 -     11803 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_leonina.k141_2053078              n 64 n 64
s Macaca_maura.k141_810534                      786 46 +      1298 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_maura.k141_810534                 I 332 n 64
s Macaca_mulatta.NC_041756.1               54488310 46 + 185288947 CCTTAAACTC--TCAC--TA-----AACTTCA---AACTAGACTACTTCTCCATAAA---A
i Macaca_mulatta.NC_041756.1               I 141 C 0
s Macaca_nemestrina.KQ007637.1             21284004 46 +  21299586 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_nemestrina.KQ007637.1             n 64 n 64
s Macaca_nigra.k141_2036066                     712 46 -      1371 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_nigra.k141_2036066                I 458 n 64
s Macaca_radiata.k141_3789419                 18639 46 +     33918 ccttaaactc--tcac--ta-----aacttca---aactagactacttctccatAAA---A
i Macaca_radiata.k141_3789419              n 64 I 130
s Macaca_siberu.k141_977153                    1336 46 -      2827 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_siberu.k141_977153                n 64 n 64
s Macaca_silenus.Contig1351                    2128 46 -     15624 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_silenus.Contig1351                n 64 n 64
s Macaca_thibetana.k99_617125                  2712 46 +      3192 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_thibetana.k99_617125              I 417 I 18
s Macaca_tonkeana.k141_828967                  3606 46 -     28304 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Macaca_tonkeana.k141_828967              I 417 n 64
s Mandrillus_leucophaeus.scaffold154336        1623 46 -      1991 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Mandrillus_leucophaeus.scaffold154336    I 458 n 64
s Mandrillus_sphinx.Contig7                14440985 46 +  51421834 TCTCAAATTC--TCAC--TA-----AGCTTCA---AACTAGACTACTTCTCCACAAA---A
i Mandrillus_sphinx.Contig7                C 0 I 18
s Miopithecus_ogouensis.k141_2701950           4173 46 +     10686 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTGGACTACTTCTCCAtaat---a
i Miopithecus_ogouensis.k141_2701950       I 458 n 46
s Nasalis_larvatus.k141_505618                 3904 46 +      4009 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Nasalis_larvatus.k141_505618             n 0 C 0
s Pan_paniscus.CM003390.1                  99458646 45 - 162613886 -CTTAATCTC--TCAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAA---A
i Pan_paniscus.CM003390.1                  I 194 C 0
s Pan_troglodytes.CM009245.2               57354698 45 + 156046543 -CTTAATCTC--TCAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAA---A
i Pan_troglodytes.CM009245.2               I 194 C 0
s Papio_anubis.CM001495.2                  34020362 51 - 183742232 CTTCAAATTC--TCAAGATA-----AGCTTTACTAAACTAGACTACTTCTCCACAAA---A
i Papio_anubis.CM001495.2                  I 54 I 18
s Papio_cynocephalus.k141_3719535              4974 46 +      6274 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Papio_cynocephalus.k141_3719535          I 201 I 93
s Papio_hamadryas.Contig36                 14843634 46 +  22161365 tctcaaattc--tcag--ta-----agcttca---aactagactacttctccacaaa---a
i Papio_hamadryas.Contig36                 C 0 I 18
s Papio_kindae.k141_6307720                    2744 46 -      3308 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Papio_kindae.k141_6307720                n 64 I 93
s Papio_papio.k141_3011620                    17904 46 +     19208 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCAtaat---a
i Papio_papio.k141_3011620                 I 201 I 93
s Papio_ursinus.k141_524563                    3214 46 -      4494 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAgactacttctccataat---a
i Papio_ursinus.k141_524563                n 64 I 93
s Piliocolobus_badius.k141_790724             27895 46 +     36280 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Piliocolobus_badius.k141_790724          n 0 I 20
s Piliocolobus_gordonorum.k141_763911         22917 46 -     32418 TCTTaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Piliocolobus_gordonorum.k141_763911      I 201 I 46
s Piliocolobus_kirkii.k141_365592             22543 42 +     32298 TCTTAAACT------C--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Piliocolobus_kirkii.k141_365592          n 10 I 18
s Piliocolobus_tephrosceles.PDMG02000047.1 44085213 46 +  46020825 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Piliocolobus_tephrosceles.PDMG02000047.1 I 201 I 18
s Pongo_abelii.KZ622949.1                   3632559 46 +   3740455 ccttaaactc--tcac--ta-----agcttca---aactagactacttctccataaa---a
i Pongo_abelii.KZ622949.1                  I 62 n 45
s Pongo_pygmaeus.ctg463                      317691 46 -    482523 ccttaAACTC--TCAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAA---A
i Pongo_pygmaeus.ctg463                    I 62 C 0
s Presbytis_comata.k141_325009                   36 46 +      2174 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Presbytis_comata.k141_325009             n 46 n 46
s Presbytis_mitrata.k141_2005050              12540 46 +     23059 CCTTAAACTC--TCAT--TA-----AGCTTCA---AACTAGACTACTTCTTCATAAT---A
i Presbytis_mitrata.k141_2005050           I 484 I 18
s Pygathrix_cinerea.k141_1473548              20355 46 +     26068 tctcaaactc--tcac--ta-----agcttca---ggctagactaattctccacaat---a
i Pygathrix_cinerea.k141_1473548           I 195 n 98
s Pygathrix_nigripes_b.ctg270                  2252845 46 +   3288884 tctcaagctc--tcac--ta-----agcttta---aattagactacttctccacaat---a
i Pygathrix_nigripes_b.ctg270                 I 315 C 0
s Pygathrix_nigripes_a.k141_626429              10935 46 -     17932 tctcaagctc--tcac--ta-----agcttta---aattagactacttctccacaat---a
i Pygathrix_nigripes_a.k141_626429           C 0 C 0
s Rhinopithecus_bieti.k119_488595              3987 46 +      6941 tctcaagctc--tcac--ta-----agcttta---aattagactacttctccacaat---a
i Rhinopithecus_bieti.k119_488595          C 0 C 0
s Rhinopithecus_roxellana.NC_044563.1      80416106 46 - 130852392 tcttaaactc--tcac--ta-----agcttca---gactacactactcctccacaat---g
i Rhinopithecus_roxellana.NC_044563.1      I 129 n 46
s Rhinopithecus_strykeri.ctg20             25379968 46 +  26372126 tctcaagctc--tcac--ta-----agcttta---aattagactacttctccacaat---a
i Rhinopithecus_strykeri.ctg20             C 0 C 0
s Semnopithecus_entellus.k141_1708538         14506 46 -     26984 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Semnopithecus_entellus.k141_1708538      N 0 C 0
s Semnopithecus_hypoleucos.k141_850753         3668 46 -     10549 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Semnopithecus_hypoleucos.k141_850753     I 201 C 0
s Semnopithecus_johnii.k141_42276             13517 46 -     26009 TCTTAaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Semnopithecus_johnii.k141_42276          N 0 C 0
s Semnopithecus_priam.k141_790003             13484 46 -     25785 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACtagactacttctccataat---a
i Semnopithecus_priam.k141_790003          N 0 C 0
s Semnopithecus_schistaceus.k141_41818        14505 46 -     26983 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Semnopithecus_schistaceus.k141_41818     N 0 C 0
s Semnopithecus_vetulus.k141_462032           13037 46 -     25394 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Semnopithecus_vetulus.k141_462032        N 0 C 0
s Theropithecus_gelada.QGDE01007599.1          2028 46 +      2256 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Theropithecus_gelada.QGDE01007599.1      n 64 I 93
s Trachypithecus_auratus.k141_87776           13431 46 +     25996 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Trachypithecus_auratus.k141_87776        N 0 C 0
s Trachypithecus_crepusculus.k141_1094728      9721 46 +     10201 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Trachypithecus_crepusculus.k141_1094728  N 0 C 0
s Trachypithecus_cristatus.k141_744752        13423 46 -     25745 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Trachypithecus_cristatus.k141_744752     N 0 C 0
s Trachypithecus_francoisi.k141_1456919        9967 46 +     19237 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Trachypithecus_francoisi.k141_1456919    N 0 C 0
s Trachypithecus_geei.k141_304630             14872 46 -     38632 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Trachypithecus_geei.k141_304630          I 201 C 0
s Trachypithecus_germaini.k141_847984         14307 46 -     19509 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Trachypithecus_germaini.k141_847984      N 0 C 0
s Trachypithecus_hatinhensis.k141_710675       9729 46 +     19025 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Trachypithecus_hatinhensis.k141_710675   I 201 C 0
s Trachypithecus_laotum.k141_1184199           9727 46 +     19025 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Trachypithecus_laotum.k141_1184199       N 0 C 0
s Trachypithecus_leucocephalus.k141_754018     5523 46 +      9450 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Trachypithecus_leucocephalus.k141_754018 I 158 C 0
s Trachypithecus_melamera.k141_163048          9731 46 -     12058 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Trachypithecus_melamera.k141_163048      I 201 C 0
s Trachypithecus_obscurus.k141_624813         13433 46 +     22239 TCTTAAACTC--TAAC--TA-----AGCTTCA---AACTAGACTACTTCTCCATAAT---A
i Trachypithecus_obscurus.k141_624813      N 0 C 0
s Trachypithecus_phayrei.ctg1353              13735 46 -     54039 tcttaaactc--taac--ta-----agcttca---aactagactacttctccataat---a
i Trachypithecus_phayrei.ctg1353           N 0 C 0
s Trachypithecus_pileatus.k141_1770085        10721 46 -     28608 tcttaaactc--tcac--ta-----agcttca---gactacactactcctccacaat---g
i Trachypithecus_pileatus.k141_1770085     I 52 C 0

a score=0.000000
s hg38.chrM                                    12600 18 +     16569 TTCATCCCTG--------TAG-CATTG
s Allenopithecus_nigroviridis.k141_3930415      8447 18 -     11164 tttatctcag--------tag-cacta
i Allenopithecus_nigroviridis.k141_3930415 I 243 C 0
s Allochrocebus_lhoesti.k141_2600595           44570 18 -     69378 TTTATCCCAG--------TAG-TAGTA
i Allochrocebus_lhoesti.k141_2600595       I 98 I 44
s Allochrocebus_preussi.k141_3734564            9948 18 -     19198 tttatcccag--------tag-tagta
i Allochrocebus_preussi.k141_3734564       I 98 I 44
s Allochrocebus_solatus.k141_1967293           11325 18 +     22295 TTTATCCCAG--------TAG-TAGTA
i Allochrocebus_solatus.k141_1967293       C 0 I 28
s Cercocebus_atys.KQ010367.1                11408270 18 -  11668111 TTTATCCCAG--------TAG-CACTA
i Cercocebus_atys.KQ010367.1               C 0 I 112
s Cercocebus_chrysogaster.k141_1945715         89280 18 -    105757 tttatcccag--------tag-cacta
i Cercocebus_chrysogaster.k141_1945715     I 187 I 112
s Cercocebus_lunulatus.k141_5051340             2304 18 +     26539 TTTATCCCAG--------TAG-TAGTA
i Cercocebus_lunulatus.k141_5051340        I 98 I 44
s Cercocebus_torquatus.k141_1852545             5237 18 +     49255 TTTATCCCAG--------TAG-CACTA
i Cercocebus_torquatus.k141_1852545        C 0 I 112
s Cercopithecus_ascanius.k141_1474622          10121 18 -     20001 tttatcccag--------tag-tagta
i Cercopithecus_ascanius.k141_1474622      I 98 I 44
s Cercopithecus_cephus.k141_2404415            10693 18 +     17637 TTTATCCCAG--------TAG-TAGTA
i Cercopithecus_cephus.k141_2404415        I 98 I 44
s Cercopithecus_diana.k141_1147129             15148 18 +     57904 tttatcccag--------taG-TAGTA
i Cercopithecus_diana.k141_1147129         I 98 I 44
s Cercopithecus_hamlyni.k141_1438795            9984 18 -     20535 tttatcccag--------tAG-TAGta
i Cercopithecus_hamlyni.k141_1438795       I 98 n 64
s Cercopithecus_lowei.k141_784555              10352 18 -     18723 TTTATCCCAA--------TAG-TAGTA
i Cercopithecus_lowei.k141_784555          I 108 I 44
s Cercopithecus_albogularis.ctg28                 11340611 18 +  15093345 TTTATCCCAG--------TAG-TAGTA
i Cercopithecus_albogularis.ctg28                I 98 I 44
s Cercopithecus_mona.ctg93                    938489 18 +   9558045 TTTATCCCAA--------TAG-TAGTA
i Cercopithecus_mona.ctg93                 I 98 I 44
s Cercopithecus_neglectus.k141_2030378         10039 18 -     11116 TTTATCCCAG--------TAG-TAGTA
i Cercopithecus_neglectus.k141_2030378     I 98 I 44
s Cercopithecus_nictitans.k141_3162920          9729 18 +     18223 TTTATCCCAG--------TAG-TAGTA
i Cercopithecus_nictitans.k141_3162920     I 98 I 44
s Cercopithecus_petaurista.k141_1586297        10744 18 +     12913 TTTATCCCAG--------TAG-TAGTA
i Cercopithecus_petaurista.k141_1586297    I 98 I 44
s Cercopithecus_pogonias.k141_715341           34703 18 +     35178 tttatcccag--------tag-tagta
i Cercopithecus_pogonias.k141_715341       I 175 I 44
s Cercopithecus_roloway.k141_2348395           14425 18 -     24522 TttatccCAG--------TAG-CACTA
i Cercopithecus_roloway.k141_2348395       C 0 I 75
s Chlorocebus_aethiops.ctg119                4670879 18 +   8571089 TTTATCCCAG--------TAG-TAGTA
i Chlorocebus_aethiops.ctg119              I 175 I 44
s Chlorocebus_pygerythrus.k141_1337201         12056 18 -     14715 TTTATCCCAG--------TAG-TAGTA
i Chlorocebus_pygerythrus.k141_1337201     I 98 I 44
s Chlorocebus_sabaeus.CM001941.2            72798551 18 + 126035930 tttatcccag--------tag-tagta
i Chlorocebus_sabaeus.CM001941.2           n 64 I 44
s Colobus_angolensis.KN980207.1              6635519 18 -   6947193 tttatctcag--------tag-catta
i Colobus_angolensis.KN980207.1            C 0 C 0
s Colobus_guereza.ContigUN                  11638555 18 +  34923435 tttatctcag--------tag-catta
i Colobus_guereza.ContigUN                 C 0 I 28
s Colobus_polykomos.k141_2065478               10950 19 +     95891 tgcattccagcac-ca--tag-t----
i Colobus_polykomos.k141_2065478           n 46 n 46
s Erythrocebus_patas.Contig114                871542 18 -   6746984 tttatcccag--------taG-TAGTA
i Erythrocebus_patas.Contig114             I 98 I 44
s Gorilla_beringei.k141_1529327                16648 18 +     19115 TTTATCCCAG--------TAG-CACTA
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg101                4014073 18 +   8526212 tttatcccag--------tag-tagta
i Lophocebus_aterrimus.ctg101              I 98 I 44
s Macaca_arctoides.k141_416589                  2155 18 -     26632 tttatcccag--------tag-tagta
i Macaca_arctoides.k141_416589             I 46 C 0
s Macaca_assamensis.Contig80                  961148 18 +   9119267 TTTATCCCAG--------TAG-TAGTA
i Macaca_assamensis.Contig80               I 108 I 44
s Macaca_cyclopis.k119_897545                   4344 18 -     10490 TTTATCCCAG--------TAG-CACTA
i Macaca_cyclopis.k119_897545              I 187 I 112
s Macaca_fascicularis.k141_888912               1168 18 -     45859 tttatcccag--------tag-tagta
i Macaca_fascicularis.k141_888912          I 98 I 44
s Macaca_fuscata.k119_959180                    5398 18 +     11606 tttatcccag--------tag-cacta
i Macaca_fuscata.k119_959180               I 187 I 39
s Macaca_leonina.k141_172241                    2649 18 -     27484 TTTATCCCAG--------TAG-TAGTA
i Macaca_leonina.k141_172241               I 108 I 44
s Macaca_maura.k141_1765751                    10237 18 -     48667 tttatcccag--------tag-tagta
i Macaca_maura.k141_1765751                I 98 I 44
s Macaca_mulatta.NC_041756.1                54488356 18 + 185288947 TTTATCCCAG--------TAG-CACTA
i Macaca_mulatta.NC_041756.1               C 0 n 0
s Macaca_nemestrina.KQ006940.1               9376478 18 -  10413719 tttatcccag--------tag-cacta
i Macaca_nemestrina.KQ006940.1             I 230 I 112
s Macaca_nigra.k141_580096                     31842 18 -     56270 tttatcccag--------tag-tagta
i Macaca_nigra.k141_580096                 I 108 I 44
s Macaca_radiata.k141_2031987                   2217 18 +     59341 TTTATCCCAG--------TAG-TAGTA
i Macaca_radiata.k141_2031987              I 108 I 44
s Macaca_siberu.k141_204286                    11184 18 +     30583 TTTATCCCAG--------TAG-TAGTA
i Macaca_siberu.k141_204286                I 98 I 44
s Macaca_silenus.Contig84                     962844 18 +   9193133 tttatcccag--------tag-tagta
i Macaca_silenus.Contig84                  I 108 I 44
s Macaca_thibetana.k99_179800                   4320 18 +     12326 TTTATCCCAG--------TAG-CACTA
i Macaca_thibetana.k99_179800              I 230 I 112
s Macaca_tonkeana.k141_2169513                 60315 19 -     61047 ttcactccagcac-ca--tag-t----
i Macaca_tonkeana.k141_2169513             n 64 n 64
s Mandrillus_leucophaeus.scaffold228        12686155 18 -  20774610 TTTATCCCAG--------TAG-TAGTA
i Mandrillus_leucophaeus.scaffold228       I 98 I 44
s Mandrillus_sphinx.Contig93                  913895 18 -   9270810 tttatcccag--------tag-tagta
i Mandrillus_sphinx.Contig93               I 175 I 44
s Miopithecus_ogouensis.k141_69083             11444 18 -     35729 tttaccccag--------taG-TAGTA
i Miopithecus_ogouensis.k141_69083         I 46 C 0
s Nasalis_larvatus.k141_505618                  3950 18 +      4009 tttatctcag--------tag-catta
i Nasalis_larvatus.k141_505618             C 0 C 0
s Pan_paniscus.CM003390.1                   99458691 18 - 162613886 TTTATCCCAG--------TAG-CACTA
i Pan_paniscus.CM003390.1                  C 0 C 0
s Pan_troglodytes.CM009245.2                57354743 18 + 156046543 TTTATCCCAG--------TAG-CACTA
i Pan_troglodytes.CM009245.2               C 0 C 0
s Papio_anubis.CM001504.2                   71917556 18 + 124513186 TTTATCCCAG--------TAG-TAGTA
i Papio_anubis.CM001504.2                  I 46 I 209
s Papio_cynocephalus.k141_3949568               7238 18 -      8346 tttatcccag--------tag-cacta
i Papio_cynocephalus.k141_3949568          I 187 I 112
s Papio_hamadryas.Contig48                  11402253 18 +  17843046 TTTATCCCAG--------TAG-TAGTA
i Papio_hamadryas.Contig48                 I 175 I 44
s Papio_kindae.k141_5429907                     2347 18 -     26587 tttatcccag--------tAG-TAGTA
i Papio_kindae.k141_5429907                I 102 I 45
s Papio_papio.k141_1575386                      9621 18 +     19082 tttatcccag--------tag-tagta
i Papio_papio.k141_1575386                 I 172 I 44
s Papio_ursinus.k141_1596938                    9937 18 -     18940 TTTATCCCAG--------TAG-TAGTA
i Papio_ursinus.k141_1596938               I 242 I 44
s Piliocolobus_badius.k141_1605928             55434 19 +     78314 ttcactctagcac-ta--tag-t----
i Piliocolobus_badius.k141_1605928         n 20 n 20
s Piliocolobus_gordonorum.k141_1297586         10856 19 +     26238 tccactccagcac-ca--tag-t----
i Piliocolobus_gordonorum.k141_1297586     n 46 n 46
s Piliocolobus_kirkii.k141_33010                1861 19 -     21016 tccactccagcac-ca--tag-t----
i Piliocolobus_kirkii.k141_33010           n 18 n 18
s Piliocolobus_tephrosceles.PDMG02000363.1   2051537 19 -   4303611 tccactccagcac-ca--tag-t----
i Piliocolobus_tephrosceles.PDMG02000363.1 n 18 n 18
s Pongo_abelii.CM009269.2                  128598706 18 - 145408105 TTTATCCCAG--------TAG-CACTA
i Pongo_abelii.CM009269.2                  I 45 C 0
s Pongo_pygmaeus.ctg463                       317737 18 -    482523 TTTATCCCAG--------TAG-CACTA
i Pongo_pygmaeus.ctg463                    C 0 C 0
s Presbytis_comata.k141_1347401                12168 18 +     13139 TTTATCCCAG--------TAG-CACTA
i Presbytis_comata.k141_1347401            I 46 I 28
s Presbytis_mitrata.k141_1109549                4187 18 +      7485 TTTATCCCAG--------TAG-CACTA
i Presbytis_mitrata.k141_1109549           I 46 I 28
s Pygathrix_cinerea.k141_1655762               11058 13 +     56938 TTTATCCCAG--------TAG------
i Pygathrix_cinerea.k141_1655762           I 98 n 98
s Pygathrix_nigripes_b.ctg270                   2252891 13 +   3288884 tttatcccag--------tag------
i Pygathrix_nigripes_b.ctg270                 C 0 n 0
s Pygathrix_nigripes_a.k141_626429               10981 13 -     17932 tttatcccag--------tag------
i Pygathrix_nigripes_a.k141_626429           C 0 N 0
s Rhinopithecus_bieti.k119_488595               4033 13 +      6941 tttatcccag--------tag------
i Rhinopithecus_bieti.k119_488595          C 0 n 0
s Rhinopithecus_roxellana.NC_044555.1       47662772 13 - 154578354 tttatcccag--------tag------
i Rhinopithecus_roxellana.NC_044555.1      I 46 N 0
s Rhinopithecus_strykeri.ctg20              25380014 13 +  26372126 tttatcccag--------tag------
i Rhinopithecus_strykeri.ctg20             C 0 n 0
s Semnopithecus_entellus.k141_1708538          14552 18 -     26984 tttatctcag--------tag-catta
i Semnopithecus_entellus.k141_1708538      C 0 C 0
s Semnopithecus_hypoleucos.k141_850753          3714 18 -     10549 tttatctcag--------tag-catta
i Semnopithecus_hypoleucos.k141_850753     C 0 C 0
s Semnopithecus_johnii.k141_42276              13563 18 -     26009 tttatctcag--------tag-catta
i Semnopithecus_johnii.k141_42276          C 0 C 0
s Semnopithecus_priam.k141_790003              13530 18 -     25785 tttatctcag--------tag-catta
i Semnopithecus_priam.k141_790003          C 0 C 0
s Semnopithecus_schistaceus.k141_41818         14551 18 -     26983 TTTATCTCAG--------TAG-CATTA
i Semnopithecus_schistaceus.k141_41818     C 0 C 0
s Semnopithecus_vetulus.k141_462032            13083 18 -     25394 tttatctcag--------tag-catTA
i Semnopithecus_vetulus.k141_462032        C 0 C 0
s Theropithecus_gelada.CM009952.1          182322646 18 - 183260707 tttatcccag--------tag-cacta
i Theropithecus_gelada.CM009952.1          I 187 I 112
s Trachypithecus_auratus.k141_87776            13477 18 +     25996 TTTATCTCAG--------TAG-CATTA
i Trachypithecus_auratus.k141_87776        C 0 C 0
s Trachypithecus_crepusculus.k141_1094728       9767 18 +     10201 tttatctcag--------tag-catta
i Trachypithecus_crepusculus.k141_1094728  C 0 C 0
s Trachypithecus_cristatus.k141_744752         13469 18 -     25745 tttatctcag--------tag-catta
i Trachypithecus_cristatus.k141_744752     C 0 C 0
s Trachypithecus_francoisi.k141_1456919        10013 18 +     19237 tttatctcag--------tag-catta
i Trachypithecus_francoisi.k141_1456919    C 0 C 0
s Trachypithecus_geei.k141_304630              14918 18 -     38632 tttatctcag--------tag-catta
i Trachypithecus_geei.k141_304630          C 0 C 0
s Trachypithecus_germaini.k141_847984          14353 18 -     19509 tttatctcag--------tag-catta
i Trachypithecus_germaini.k141_847984      C 0 C 0
s Trachypithecus_hatinhensis.k141_710675        9775 18 +     19025 tttatctcaG--------TAG-CATTA
i Trachypithecus_hatinhensis.k141_710675   C 0 C 0
s Trachypithecus_laotum.k141_1184199            9773 18 +     19025 tttatctcag--------tag-catta
i Trachypithecus_laotum.k141_1184199       C 0 C 0
s Trachypithecus_leucocephalus.k141_754018      5569 18 +      9450 tttatctcag--------tag-catta
i Trachypithecus_leucocephalus.k141_754018 C 0 C 0
s Trachypithecus_melamera.k141_163048           9777 18 -     12058 tttatctcag--------tag-catta
i Trachypithecus_melamera.k141_163048      C 0 C 0
s Trachypithecus_obscurus.k141_624813          13479 18 +     22239 TTTATCTCAG--------TAG-CATTA
i Trachypithecus_obscurus.k141_624813      C 0 C 0
s Trachypithecus_phayrei.ctg1353               13781 18 -     54039 tttatctcag--------tag-catta
i Trachypithecus_phayrei.ctg1353           C 0 C 0
s Trachypithecus_pileatus.k141_1770085         10767 13 -     28608 tttATCCCAG--------TAG------
i Trachypithecus_pileatus.k141_1770085     C 0 N 0

a score=0.000000
s hg38.chrM                                    12618 28 +     16569 TTCGTTA-------------CAT-----GGTC-CAT--C-----ATAG-A-ATTCT
s Allenopithecus_nigroviridis.k141_3930415      8465 28 -     11164 tttgtca-------------cct-----gatc-tat--t-----agag-a-attct
i Allenopithecus_nigroviridis.k141_3930415 C 0 C 0
s Allochrocebus_lhoesti.k141_1513956            8200 28 +     44761 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Allochrocebus_lhoesti.k141_1513956       I 18 C 0
s Allochrocebus_preussi.k141_3466725            8217 28 +     53249 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Allochrocebus_preussi.k141_3466725       I 18 C 0
s Allochrocebus_solatus.k141_1287866            4535 28 +     13631 TTTGTCA-------------CCT-----GATC-TAT--T-----AGAG-A-ATTCT
i Allochrocebus_solatus.k141_1287866       n 28 I 43
s Cercocebus_atys.KQ010939.1                29210081 28 +  29793205 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Cercocebus_atys.KQ010939.1               I 64 C 0
s Cercocebus_chrysogaster.k141_129667          30909 28 -     34785 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Cercocebus_chrysogaster.k141_129667      I 64 C 0
s Cercocebus_lunulatus.k141_1448852             7327 28 -     50786 ctcatta-------------cct-----gatc-tat--T-----ATAG-A-ATTCT
i Cercocebus_lunulatus.k141_1448852        I 64 I 119
s Cercocebus_torquatus.k141_301629              7412 28 -     11288 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Cercocebus_torquatus.k141_301629         I 64 C 0
s Cercopithecus_ascanius.k141_395955             898 28 +     10858 ctcatta-------------cct-----gatc-tat--t-----atag-a-aTTCT
i Cercopithecus_ascanius.k141_395955       I 18 C 0
s Cercopithecus_cephus.k141_294495              2361 28 -      5583 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Cercopithecus_cephus.k141_294495         I 18 C 0
s Cercopithecus_diana.k141_2649081              7411 28 -     35932 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Cercopithecus_diana.k141_2649081         I 18 C 0
s Cercopithecus_hamlyni.k141_1438427            5204 28 -     46742 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Cercopithecus_hamlyni.k141_1438427       I 64 I 16
s Cercopithecus_lowei.k141_1304160              2624 28 -      4275 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Cercopithecus_lowei.k141_1304160         I 64 C 0
s Cercopithecus_albogularis.ctg631                   22087 28 -     59035 TTTATCA-------------CCT-----GATC-TAT--T-----AGAG-A-ATTCT
i Cercopithecus_albogularis.ctg631               I 18 I 45
s Cercopithecus_mona.ctg42                  15303692 28 +  20621893 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Cercopithecus_mona.ctg42                 I 64 C 0
s Cercopithecus_neglectus.k141_2633140         10312 28 -     57664 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Cercopithecus_neglectus.k141_2633140     I 64 C 0
s Cercopithecus_nictitans.k141_131260           1419 28 +      8556 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Cercopithecus_nictitans.k141_131260      I 18 C 0
s Cercopithecus_petaurista.k141_1954245         1804 28 -     33246 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Cercopithecus_petaurista.k141_1954245    I 18 C 0
s Cercopithecus_pogonias.k141_2349534          12679 28 +     31427 ctcaTTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Cercopithecus_pogonias.k141_2349534      I 64 C 0
s Cercopithecus_roloway.k141_2783013           28210 28 -     43083 ctcatta-------------cct-----gatc-tat--t-----atag-a-attCT
i Cercopithecus_roloway.k141_2783013       I 64 C 0
s Chlorocebus_aethiops.ctg56                12889434 28 +  17892486 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Chlorocebus_aethiops.ctg56               I 64 C 0
s Chlorocebus_pygerythrus.k141_745568           7961 28 -     98243 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Chlorocebus_pygerythrus.k141_745568      I 64 C 0
s Chlorocebus_sabaeus.CM001947.1            33758345 28 - 135778131 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Chlorocebus_sabaeus.CM001947.1           I 64 C 0
s Colobus_angolensis.KN980207.1              6635537 28 -   6947193 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Colobus_angolensis.KN980207.1            C 0 C 0
s Colobus_guereza.LG14                      48812888 28 - 128784145 ttcatta-------------ctt-----gatc-tat--t-----atag-a-gttct
i Colobus_guereza.LG14                     n 28 n 28
s Colobus_polykomos.k141_2215831                 899 28 -     10747 tttatta-------------cct-----gatg-cat--t-----atag-a-attct
i Colobus_polykomos.k141_2215831           n 46 I 124
s Erythrocebus_patas.Contig40               15742245 28 +  21278523 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Erythrocebus_patas.Contig40              I 18 C 0
s Gorilla_beringei.k141_1529327                16666 28 +     19115 TTTGTCA-------------CCT-----GATC-TAT--T-----AGAG-A-ATTCT
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg47                 6876460 28 -  17053299 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Lophocebus_aterrimus.ctg47               I 64 I 119
s Macaca_arctoides.k141_416589                  2173 28 -     26632 tttgtta-------------cct-----gacc-tat--t-----gtag-a-attct
i Macaca_arctoides.k141_416589             C 0 C 0
s Macaca_assamensis.Contig5                 34322160 28 -  60120075 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Macaca_assamensis.Contig5                I 64 C 0
s Macaca_cyclopis.k119_512377                   5693 28 +     21625 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Macaca_cyclopis.k119_512377              I 64 C 0
s Macaca_fascicularis.k141_455447                630 39 +      1398 ttcatCTCCGGATCTATTCAgct-ccg-gatc-tat--t-----atcc-a------
i Macaca_fascicularis.k141_455447          n 44 n 44
s Macaca_fuscata.k119_609323                   10127 28 -     25971 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Macaca_fuscata.k119_609323               I 64 C 0
s Macaca_leonina.k141_3706292                  14057 28 -     29935 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Macaca_leonina.k141_3706292              I 64 C 0
s Macaca_maura.k141_1914888                     9969 28 -     25759 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Macaca_maura.k141_1914888                I 64 C 0
s Macaca_mulatta.NC_041758.1                34259457 28 - 187317192 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Macaca_mulatta.NC_041758.1               I 64 C 0
s Macaca_nemestrina.KQ005114.1               9180568 28 -   9503891 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Macaca_nemestrina.KQ005114.1             I 64 C 0
s Macaca_nigra.k141_1991806                     5693 28 +     21490 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Macaca_nigra.k141_1991806                I 64 C 0
s Macaca_radiata.k141_501718                    2453 28 +     18260 ctcatta-------------cct-----gatg-tat--t-----atag-a-attct
i Macaca_radiata.k141_501718               I 64 C 0
s Macaca_siberu.k141_1350179                    7788 28 +     23600 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Macaca_siberu.k141_1350179               I 64 C 0
s Macaca_silenus.Contig1                    14194543 28 +  84276269 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Macaca_silenus.Contig1                   I 64 C 0
s Macaca_thibetana.k99_617125                   2776 28 +      3192 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Macaca_thibetana.k99_617125              I 18 n 112
s Macaca_tonkeana.k141_2069709                 16621 28 +     32421 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Macaca_tonkeana.k141_2069709             I 64 C 0
s Mandrillus_leucophaeus.scaffold284         9283475 28 -  27319382 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Mandrillus_leucophaeus.scaffold284       I 64 C 0
s Mandrillus_sphinx.Contig7                 14441049 28 +  51421834 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Mandrillus_sphinx.Contig7                I 18 C 0
s Miopithecus_ogouensis.k141_69083             11462 28 -     35729 TTTGTTA-------------CCT-----GACC-TAT--T-----GTAG-A-ATTCT
i Miopithecus_ogouensis.k141_69083         C 0 C 0
s Nasalis_larvatus.k141_505618                  3968 28 +      4009 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Nasalis_larvatus.k141_505618             C 0 C 0
s Pan_paniscus.CM003390.1                   99458709 28 - 162613886 TTTGTCA-------------CCT-----GATC-TAT--T-----AGAG-A-ATTCT
i Pan_paniscus.CM003390.1                  C 0 I 16
s Pan_troglodytes.CM009245.2                57354761 28 + 156046543 TTTGTCA-------------CCT-----GATC-TAT--T-----AGAG-A-ATTCT
i Pan_troglodytes.CM009245.2               C 0 I 16
s Papio_anubis.CM001495.2                   34020431 32 - 183742232 CTCAATA-------------CCC--TTAGATCATAT--T-----ATAG-A-ATTCT
i Papio_anubis.CM001495.2                  I 18 C 0
s Papio_cynocephalus.k141_1747982               1864 28 +     16929 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Papio_cynocephalus.k141_1747982          I 64 C 0
s Papio_hamadryas.Contig36                  14843698 28 +  22161365 ctCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Papio_hamadryas.Contig36                 I 18 C 0
s Papio_kindae.k141_2318205                    17896 28 -     48934 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Papio_kindae.k141_2318205                I 64 C 0
s Papio_papio.k141_2436119                     34960 28 -     56783 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Papio_papio.k141_2436119                 I 64 C 0
s Papio_ursinus.k141_2685680                   12229 28 +     15956 ctcatta-------------cct-----gatc-tat--t-----atag-a-attct
i Papio_ursinus.k141_2685680               I 64 C 0
s Piliocolobus_badius.k141_790724              27961 26 +     36280 --CATTA-------------CCT-----GATC-TAT--T-----GTAG-A-ATTTT
i Piliocolobus_badius.k141_790724          I 20 C 0
s Piliocolobus_gordonorum.k141_399085           7867 28 -     13842 ttcatta-------------ctt-----gatc-tat--t-----atag-a-gttct
i Piliocolobus_gordonorum.k141_399085      n 46 I 93
s Piliocolobus_kirkii.k141_365592              22603 28 +     32298 TTCATTA-------------CCT-----GATC-TAT--T-----GTAG-A-ATTTT
i Piliocolobus_kirkii.k141_365592          I 18 C 0
s Piliocolobus_tephrosceles.PDMG02000047.1  44085277 28 +  46020825 ttcatta-------------cct-----gatC-Tat--t-----gtag-a-atTTT
i Piliocolobus_tephrosceles.PDMG02000047.1 I 18 C 0
s Pongo_abelii.CM009269.2                  128598724 28 - 145408105 TTTGTCA-------------CCT-----GATC-TAT--T-----AGAG-A-ATTCT
i Pongo_abelii.CM009269.2                  C 0 I 16
s Pongo_pygmaeus.ctg463                       317755 28 -    482523 TTTGTCA-------------CCT-----GATC-TGT--T-----ATAG-A-ATTCT
i Pongo_pygmaeus.ctg463                    C 0 I 81
s Presbytis_comata.k141_1013241                18410 28 +     21385 tttgtca-------------cct-----gatc-tat--t-----aTAG-A-ATTCT
i Presbytis_comata.k141_1013241            I 548 I 43
s Presbytis_mitrata.k141_2005050               12604 28 +     23059 TTTGTCA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Presbytis_mitrata.k141_2005050           I 18 I 43
s Semnopithecus_entellus.k141_1708538          14570 28 -     26984 ttcATTA-------------Cct-----gatc-tat--t-----gtag-a-atttt
i Semnopithecus_entellus.k141_1708538      C 0 C 0
s Semnopithecus_hypoleucos.k141_850753          3732 28 -     10549 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Semnopithecus_hypoleucos.k141_850753     C 0 C 0
s Semnopithecus_johnii.k141_42276              13581 28 -     26009 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Semnopithecus_johnii.k141_42276          C 0 C 0
s Semnopithecus_priam.k141_790003              13548 28 -     25785 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Semnopithecus_priam.k141_790003          C 0 C 0
s Semnopithecus_schistaceus.k141_41818         14569 28 -     26983 TTCATTA-------------CCT-----GATC-TAT--T-----GTAG-A-ATTTT
i Semnopithecus_schistaceus.k141_41818     C 0 C 0
s Semnopithecus_vetulus.k141_462032            13101 28 -     25394 TTCATTA-------------CCT-----GATC-TAT--T-----GTAG-A-ATTTT
i Semnopithecus_vetulus.k141_462032        C 0 C 0
s Theropithecus_gelada.CM009954.1           34437913 28 - 186847797 CTCATTA-------------CCT-----GATC-TAT--T-----ATAG-A-ATTCT
i Theropithecus_gelada.CM009954.1          I 64 C 0
s Trachypithecus_auratus.k141_87776            13495 28 +     25996 TTCATTA-------------CCT-----GATC-TAT--T-----GTAG-A-ATTTT
i Trachypithecus_auratus.k141_87776        C 0 C 0
s Trachypithecus_crepusculus.k141_1094728       9785 28 +     10201 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Trachypithecus_crepusculus.k141_1094728  C 0 C 0
s Trachypithecus_cristatus.k141_744752         13487 28 -     25745 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Trachypithecus_cristatus.k141_744752     C 0 C 0
s Trachypithecus_francoisi.k141_1456919        10031 28 +     19237 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Trachypithecus_francoisi.k141_1456919    C 0 C 0
s Trachypithecus_geei.k141_304630              14936 28 -     38632 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Trachypithecus_geei.k141_304630          C 0 C 0
s Trachypithecus_germaini.k141_847984          14371 28 -     19509 ttcatta-------------cct-----gatC-TAT--T-----GTAG-A-ATTTT
i Trachypithecus_germaini.k141_847984      C 0 C 0
s Trachypithecus_hatinhensis.k141_710675        9793 28 +     19025 TTCATTA-------------CCT-----GATC-TAT--T-----GTAG-A-ATTTT
i Trachypithecus_hatinhensis.k141_710675   C 0 C 0
s Trachypithecus_laotum.k141_1184199            9791 28 +     19025 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Trachypithecus_laotum.k141_1184199       C 0 C 0
s Trachypithecus_leucocephalus.k141_754018      5587 28 +      9450 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Trachypithecus_leucocephalus.k141_754018 C 0 C 0
s Trachypithecus_melamera.k141_163048           9795 28 -     12058 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Trachypithecus_melamera.k141_163048      C 0 C 0
s Trachypithecus_obscurus.k141_624813          13497 28 +     22239 TTCATTA-------------CCT-----GATC-TAT--T-----GTAG-A-ATTTT
i Trachypithecus_obscurus.k141_624813      C 0 C 0
s Trachypithecus_phayrei.ctg1353               13799 28 -     54039 ttcatta-------------cct-----gatc-tat--t-----gtag-a-atttt
i Trachypithecus_phayrei.ctg1353           C 0 C 0
e Rhinopithecus_strykeri.ctg20              25380027  0 +  26372126 I
e Rhinopithecus_bieti.k119_488595               4046  0 +      6941 I
e Pygathrix_nigripes_b.ctg270                   2252904  0 +   3288884 I
e Pygathrix_cinerea.k141_1655762               11071 98 +     56938 I

a score=0.000000
s hg38.chrM                                    12646 16 +     16569 CACTGT--GATATA----T-AAA
s Allenopithecus_nigroviridis.k141_3930415      8493 18 -     11164 caatatTTGATATA----T-AAA
i Allenopithecus_nigroviridis.k141_3930415 C 0 I 27
s Allochrocebus_lhoesti.k141_1513956            8228 16 +     44761 CAATAT--GATATA----T-AAA
i Allochrocebus_lhoesti.k141_1513956       C 0 I 73
s Allochrocebus_preussi.k141_3466725            8245 16 +     53249 caatat--gatata----t-aaa
i Allochrocebus_preussi.k141_3466725       C 0 I 73
s Allochrocebus_solatus.k141_1967293           11371 16 +     22295 CAATAT--GATACA----T-AAA
i Allochrocebus_solatus.k141_1967293       I 28 C 0
s Cercocebus_atys.KQ010939.1                29210109 16 +  29793205 caatat--gatata----t-aaa
i Cercocebus_atys.KQ010939.1               C 0 I 103
s Cercocebus_chrysogaster.k141_129667          30937 16 -     34785 caatat--gatata----t-aaa
i Cercocebus_chrysogaster.k141_129667      C 0 I 103
s Cercocebus_lunulatus.k141_2748568             1370 16 -      4674 caatat--gataca----t-aaa
i Cercocebus_lunulatus.k141_2748568        n 119 I 163
s Cercocebus_torquatus.k141_301629              7440 16 -     11288 caatat--gatata----t-aaa
i Cercocebus_torquatus.k141_301629         C 0 I 103
s Cercopithecus_ascanius.k141_395955             926 16 +     10858 CAATAT--GATATA----T-AAA
i Cercopithecus_ascanius.k141_395955       C 0 I 34
s Cercopithecus_cephus.k141_294495              2389 16 -      5583 caatat--gatata----t-aaa
i Cercopithecus_cephus.k141_294495         C 0 I 34
s Cercopithecus_diana.k141_2649081              7439 16 -     35932 CAATAT--GATATA----T-AAA
i Cercopithecus_diana.k141_2649081         C 0 I 103
s Cercopithecus_hamlyni.k141_1541537            3814 18 +      5451 CAATATTTGATATA----T-AAA
i Cercopithecus_hamlyni.k141_1541537       n 16 n 16
s Cercopithecus_lowei.k141_1304160              2652 16 -      4275 CAATAT--GATATA----T-AAA
i Cercopithecus_lowei.k141_1304160         C 0 I 103
s Cercopithecus_albogularis.ctg5                  34210856 16 -  39242232 CAATAT--GATATA----T-AAA
i Cercopithecus_albogularis.ctg5                 I 92 I 103
s Cercopithecus_mona.ctg42                  15303720 16 +  20621893 CAATAT--GATATA----T-AAA
i Cercopithecus_mona.ctg42                 C 0 I 103
s Cercopithecus_neglectus.k141_2633140         10340 16 -     57664 caatat--gatata----t-aaa
i Cercopithecus_neglectus.k141_2633140     C 0 I 103
s Cercopithecus_nictitans.k141_131260           1447 16 +      8556 CAATAT--GATATA----T-AAA
i Cercopithecus_nictitans.k141_131260      C 0 I 103
s Cercopithecus_petaurista.k141_1954245         1832 16 -     33246 CAATAT--GATATA----T-AAA
i Cercopithecus_petaurista.k141_1954245    C 0 I 103
s Cercopithecus_pogonias.k141_2349534          12707 16 +     31427 CAATAT--GATATA----T-AAA
i Cercopithecus_pogonias.k141_2349534      C 0 I 103
s Cercopithecus_roloway.k141_2783013           28238 16 -     43083 CAATAT--GATATA----T-AAA
i Cercopithecus_roloway.k141_2783013       C 0 I 73
s Chlorocebus_aethiops.ctg56                12889462 16 +  17892486 CAATAT--GATATA----T-AAA
i Chlorocebus_aethiops.ctg56               C 0 I 34
s Chlorocebus_pygerythrus.k141_745568           7989 16 -     98243 CAATAT--GATATA----T-AAA
i Chlorocebus_pygerythrus.k141_745568      C 0 I 103
s Chlorocebus_sabaeus.CM001947.1            33758373 16 - 135778131 caatat--gatata----t-aaa
i Chlorocebus_sabaeus.CM001947.1           C 0 I 73
s Colobus_angolensis.KN980207.1              6635565 16 -   6947193 caatat--gatata----t-aag
i Colobus_angolensis.KN980207.1            C 0 n 0
s Colobus_guereza.ContigUN                  11638601 16 +  34923435 caatat--gatata----t-aag
i Colobus_guereza.ContigUN                 I 28 N 0
s Colobus_polykomos.k141_1644896                8330 16 -     13251 CAATAT--GATATA----T-AAG
i Colobus_polykomos.k141_1644896           I 46 n 124
s Erythrocebus_patas.Contig40               15742273 16 +  21278523 CAATAT--GATATA----T-AAA
i Erythrocebus_patas.Contig40              C 0 I 73
s Gorilla_beringei.k141_1529327                16694 16 +     19115 CAATAT--GGTATA----T-AAA
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg4240                   767 16 +     16837 caatat--gatata----t-aag
i Lophocebus_aterrimus.ctg4240             I 46 n 119
s Macaca_arctoides.k141_416589                  2201 16 -     26632 caatat--gataca----t-aaa
i Macaca_arctoides.k141_416589             C 0 C 0
s Macaca_assamensis.Contig5                 34322188 16 -  60120075 caatat--gatata----t-aaa
i Macaca_assamensis.Contig5                C 0 I 103
s Macaca_cyclopis.k119_512377                   5721 16 +     21625 caatat--gatata----t-aaa
i Macaca_cyclopis.k119_512377              C 0 I 103
s Macaca_fascicularis.k141_747886              24312 16 +     40098 caatat--gatata----t-aaa
i Macaca_fascicularis.k141_747886          I 92 I 103
s Macaca_fuscata.k119_609323                   10155 16 -     25971 caatat--gatata----t-aaa
i Macaca_fuscata.k119_609323               C 0 I 103
s Macaca_leonina.k141_3706292                  14085 16 -     29935 caatat--gatata----t-aaa
i Macaca_leonina.k141_3706292              C 0 I 103
s Macaca_maura.k141_1914888                     9997 16 -     25759 caatat--gataTA----T-AAA
i Macaca_maura.k141_1914888                C 0 I 103
s Macaca_mulatta.NC_041758.1                34259485 16 - 187317192 Caatat--gatata----t-aaa
i Macaca_mulatta.NC_041758.1               C 0 I 103
s Macaca_nemestrina.KQ005114.1               9180596 16 -   9503891 caatat--gatata----t-aaa
i Macaca_nemestrina.KQ005114.1             C 0 I 103
s Macaca_nigra.k141_1991806                     5721 16 +     21490 CAATAT--GATATA----T-AAA
i Macaca_nigra.k141_1991806                C 0 I 103
s Macaca_radiata.k141_501718                    2481 16 +     18260 caatat--gatata----t-aaa
i Macaca_radiata.k141_501718               C 0 I 103
s Macaca_siberu.k141_1350179                    7816 16 +     23600 CAATAT--GATATA----T-AAA
i Macaca_siberu.k141_1350179               C 0 I 103
s Macaca_silenus.Contig1                    14194571 16 +  84276269 caatat--gatata----t-aaa
i Macaca_silenus.Contig1                   C 0 I 73
s Macaca_thibetana.k99_645926                   6856 16 +     22580 caatat--gatata----t-aaa
i Macaca_thibetana.k99_645926              I 92 I 103
s Macaca_tonkeana.k141_2069709                 16649 16 +     32421 caatat--gatata----t-aaa
i Macaca_tonkeana.k141_2069709             C 0 I 103
s Mandrillus_leucophaeus.scaffold284         9283503 16 -  27319382 caATAT--GATATA----T-AAA
i Mandrillus_leucophaeus.scaffold284       C 0 I 103
s Mandrillus_sphinx.Contig7                 14441077 16 +  51421834 CAATAT--GATATA----T-AAA
i Mandrillus_sphinx.Contig7                C 0 I 73
s Miopithecus_ogouensis.k141_69083             11490 16 -     35729 CAATAT--GATACA----T-AAA
i Miopithecus_ogouensis.k141_69083         C 0 C 0
s Nasalis_larvatus.k141_505618                  3996 13 +      4009 caataT--GATATA----T----
i Nasalis_larvatus.k141_505618             C 0 n 0
s Pan_paniscus.CM003385.1                  131191555 17 + 247869975 CAATAT--GATATA----TAAAA
i Pan_paniscus.CM003385.1                  I 88 I 31
s Pan_troglodytes.CM009240.2               110737152 16 - 128755405 CAATAT--GATATA----T-AAA
i Pan_troglodytes.CM009240.2               I 88 I 31
s Papio_anubis.CM001495.2                   34020463 22 - 183742232 CAAtataggaaataataat-aaa
i Papio_anubis.CM001495.2                  C 0 C 0
s Papio_cynocephalus.k141_1747982               1892 16 +     16929 caatat--gatata----t-aaa
i Papio_cynocephalus.k141_1747982          C 0 I 103
s Papio_hamadryas.Contig36                  14843726 16 +  22161365 CAATAT--GATATA----T-AAA
i Papio_hamadryas.Contig36                 C 0 I 36
s Papio_kindae.k141_2318205                    17924 16 -     48934 caatat--gatata----t-aaa
i Papio_kindae.k141_2318205                C 0 I 103
s Papio_papio.k141_2436119                     34988 16 -     56783 caatat--gatata----t-aaa
i Papio_papio.k141_2436119                 C 0 I 73
s Papio_ursinus.k141_2685680                   12257 16 +     15956 caatat--gatata----t-aaa
i Papio_ursinus.k141_2685680               C 0 I 103
s Piliocolobus_badius.k141_790724              27987 16 +     36280 CAATAT--GATATA----T-AAG
i Piliocolobus_badius.k141_790724          C 0 C 0
s Piliocolobus_gordonorum.k141_763911          23009 16 -     32418 caatat--gatata----t-aag
i Piliocolobus_gordonorum.k141_763911      I 46 C 0
s Piliocolobus_kirkii.k141_365592              22631 16 +     32298 CAATAT--GATATA----T-AAG
i Piliocolobus_kirkii.k141_365592          C 0 C 0
s Piliocolobus_tephrosceles.PDMG02000047.1  44085305 16 +  46020825 CAATAT--GATATA----T-AAG
i Piliocolobus_tephrosceles.PDMG02000047.1 C 0 C 0
s Pongo_abelii.CM009264.2                     449096 16 + 129937803 CAATAT--GATATA----T-AAA
i Pongo_abelii.CM009264.2                  I 147 I 73
s Pongo_pygmaeus.ctg419                       445721 16 -    484106 CAATAT--GATATA----T-AAA
i Pongo_pygmaeus.ctg419                    I 224 I 255
s Presbytis_comata.k141_1347401                12214 16 +     13139 CAATAT--GATATA----T-AAA
i Presbytis_comata.k141_1347401            I 28 C 0
s Presbytis_mitrata.k141_1109549                4233 16 +      7485 CAATAT--GATATA----T-AAA
i Presbytis_mitrata.k141_1109549           I 28 C 0
s Semnopithecus_entellus.k141_1708538          14598 16 -     26984 caatat--gatata----t-aag
i Semnopithecus_entellus.k141_1708538      C 0 C 0
s Semnopithecus_hypoleucos.k141_850753          3760 16 -     10549 caatat--gatata----t-aag
i Semnopithecus_hypoleucos.k141_850753     C 0 C 0
s Semnopithecus_johnii.k141_42276              13609 16 -     26009 caatat--gatata----t-aag
i Semnopithecus_johnii.k141_42276          C 0 C 0
s Semnopithecus_priam.k141_790003              13576 16 -     25785 caatat--gatata----t-aag
i Semnopithecus_priam.k141_790003          C 0 C 0
s Semnopithecus_schistaceus.k141_41818         14597 16 -     26983 CAATAT--GATATA----T-AAG
i Semnopithecus_schistaceus.k141_41818     C 0 C 0
s Semnopithecus_vetulus.k141_462032            13129 16 -     25394 CAATAT--GATATA----T-AAG
i Semnopithecus_vetulus.k141_462032        C 0 C 0
s Theropithecus_gelada.CM009954.1           34437941 16 - 186847797 Caatat--gatata----t-aaa
i Theropithecus_gelada.CM009954.1          C 0 I 103
s Trachypithecus_auratus.k141_87776            13523 16 +     25996 CAATAT--GATATA----T-AAG
i Trachypithecus_auratus.k141_87776        C 0 C 0
s Trachypithecus_crepusculus.k141_1094728       9813 16 +     10201 caatat--gataTA----T-AAG
i Trachypithecus_crepusculus.k141_1094728  C 0 C 0
s Trachypithecus_cristatus.k141_744752         13515 16 -     25745 caatat--gatata----t-aag
i Trachypithecus_cristatus.k141_744752     C 0 C 0
s Trachypithecus_francoisi.k141_1456919        10059 16 +     19237 caatat--tatata----t-aag
i Trachypithecus_francoisi.k141_1456919    C 0 C 0
s Trachypithecus_geei.k141_304630              14964 16 -     38632 caatat--gatata----t-aag
i Trachypithecus_geei.k141_304630          C 0 C 0
s Trachypithecus_germaini.k141_847984          14399 16 -     19509 CAATAT--GATATA----T-AAG
i Trachypithecus_germaini.k141_847984      C 0 C 0
s Trachypithecus_hatinhensis.k141_710675        9821 16 +     19025 CAATAT--GATATA----T-AAG
i Trachypithecus_hatinhensis.k141_710675   C 0 C 0
s Trachypithecus_laotum.k141_1184199            9819 16 +     19025 caatat--gatata----t-aag
i Trachypithecus_laotum.k141_1184199       C 0 C 0
s Trachypithecus_leucocephalus.k141_754018      5615 16 +      9450 caatat--gatata----t-aag
i Trachypithecus_leucocephalus.k141_754018 C 0 C 0
s Trachypithecus_melamera.k141_163048           9823 16 -     12058 caatat--gaTATA----T-AAG
i Trachypithecus_melamera.k141_163048      C 0 C 0
s Trachypithecus_obscurus.k141_624813          13525 16 +     22239 CAATAT--GATATA----T-AAG
i Trachypithecus_obscurus.k141_624813      C 0 C 0
s Trachypithecus_phayrei.ctg1353               13827 16 -     54039 caatat--gatata----t-aag
i Trachypithecus_phayrei.ctg1353           C 0 C 0
e Rhinopithecus_strykeri.ctg20              25380027  0 +  26372126 I
e Rhinopithecus_bieti.k119_488595               4046  0 +      6941 I
e Pygathrix_nigripes_b.ctg270                   2252904  0 +   3288884 I
e Pygathrix_cinerea.k141_1655762               11071 98 +     56938 I

a score=0.000000
s hg38.chrM                                    12662 31 +     16569 CTC--AGACCC-AAAC--A-TTAA-T----CAG-TTC-TTC-AAA
s Allenopithecus_nigroviridis.k141_3364170     10638 31 -     35425 ctc--agaccc-taac--a-ttaa-t----caa-ttt-ttc-aaa
i Allenopithecus_nigroviridis.k141_3364170 I 160 n 27
s Allochrocebus_lhoesti.k141_2600595           44632 31 -     69378 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Allochrocebus_lhoesti.k141_2600595       I 44 n 73
s Allochrocebus_preussi.k141_3734564           10010 31 -     19198 ctc--agaccc-taac--a-ttaa-t----caa-ttt-ttc-aaa
i Allochrocebus_preussi.k141_3734564       I 44 n 73
s Allochrocebus_solatus.k141_1967293           11387 31 +     22295 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Allochrocebus_solatus.k141_1967293       C 0 n 0
s Cercocebus_atys.KQ012497.1                13121588 31 -  15015882 ctc--agaccc-taac--a-ttaA-T----CAA-TTT-TTC-AAA
i Cercocebus_atys.KQ012497.1               I 237 n 103
s Cercocebus_chrysogaster.k141_569357           2338 31 -     27394 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Cercocebus_chrysogaster.k141_569357      I 160 n 103
s Cercocebus_lunulatus.k141_5051340             2366 31 +     26539 CTC--AGACCT-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Cercocebus_lunulatus.k141_5051340        I 44 n 163
s Cercocebus_torquatus.k141_19251              12631 31 -     37166 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Cercocebus_torquatus.k141_19251          I 237 n 103
s Cercopithecus_ascanius.k141_1474622          10183 32 -     20001 ctc--agacccCTAAC--A-TTAA-T----CAA-TTT-TTA-AAA
i Cercopithecus_ascanius.k141_1474622      I 44 n 34
s Cercopithecus_cephus.k141_2404415            10755 32 +     17637 CTC--AGACCCCTAAC--A-TTAA-T----CAA-TTT-TTA-AAA
i Cercopithecus_cephus.k141_2404415        I 44 I 42
s Cercopithecus_diana.k141_1147129             15210 31 +     57904 CTC--AGACCC-TAAT--A-TTAA-T----CAA-TTT-TTC-AAA
i Cercopithecus_diana.k141_1147129         I 44 I 137
s Cercopithecus_hamlyni.k141_1438427            5248 31 -     46742 ttc--agaccc-taac--a-ttca-t----caa-ttt-ttc-aag
i Cercopithecus_hamlyni.k141_1438427       I 16 I 72
s Cercopithecus_lowei.k141_784555              10414 32 -     18723 CTC--AGACCCCTAAC--A-TTAA-T----CAA-TTT-TTA-AAA
i Cercopithecus_lowei.k141_784555          I 44 n 103
s Cercopithecus_albogularis.ctg28                 11340673 31 +  15093345 CTC--AGA-CCCTAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Cercopithecus_albogularis.ctg28                I 44 I 137
s Cercopithecus_mona.ctg93                    938551 32 +   9558045 CTC--AGACCCCTAAC--A-TTAA-T----CAA-TTT-TTA-AAA
i Cercopithecus_mona.ctg93                 I 44 I 42
s Cercopithecus_neglectus.k141_2030378         10101 31 -     11116 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Cercopithecus_neglectus.k141_2030378     I 44 I 137
s Cercopithecus_nictitans.k141_3162920          9791 31 +     18223 CTC--AGA-CCCTAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Cercopithecus_nictitans.k141_3162920     I 44 n 103
s Cercopithecus_petaurista.k141_1586297        10806 32 +     12913 CTC--AGACCCCTAAC--A-TTAA-T----CAA-TTT-TTA-AAA
i Cercopithecus_petaurista.k141_1586297    I 44 n 103
s Cercopithecus_pogonias.k141_715341           34765 32 +     35178 ctc--agacccCTAAC--A-TTAA-T----CAA-TTT-TTA-AAA
i Cercopithecus_pogonias.k141_715341       I 44 n 103
s Cercopithecus_roloway.k141_3125301            5497 31 -      7894 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Cercopithecus_roloway.k141_3125301       I 160 n 73
s Chlorocebus_aethiops.ctg119                4670941 31 +   8571089 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Chlorocebus_aethiops.ctg119              I 44 n 34
s Chlorocebus_pygerythrus.k141_1337201         12118 31 -     14715 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Chlorocebus_pygerythrus.k141_1337201     I 44 I 46
s Chlorocebus_sabaeus.CM001941.2            72798613 31 + 126035930 ctc--agaccc-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Chlorocebus_sabaeus.CM001941.2           I 44 I 137
s Colobus_angolensis.KN984256.1               919163 31 -   8206458 CTC--AGGCCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Colobus_angolensis.KN984256.1            n 0 n 0
s Colobus_guereza.LG21                      56922777 31 +  77344527 GTC--AGGCCC-TAAC--A-TTAA-T----CAA-TTT-TTC-GAA
i Colobus_guereza.LG21                     N 0 I 42
s Colobus_polykomos.k141_286489                 4023 31 +     39754 CTC--AGGCCC-TAAC--A-TTAA-T----CAA-TTT-TTC-GAA
i Colobus_polykomos.k141_286489            n 124 C 0
s Erythrocebus_patas.Contig114                871604 31 -   6746984 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Erythrocebus_patas.Contig114             I 44 C 0
s Gorilla_beringei.k141_1529327                16710 31 +     19115 ATC--AGATCC-CAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg101                4014135 31 +   8526212 ctc--agaccc-taac--a-ttaa-t----caa-ttt-ttc-aaa
i Lophocebus_aterrimus.ctg101              I 44 I 133
s Macaca_arctoides.k141_416589                  2217 31 -     26632 ctc--agaccc-taac--a-ttaa-t----cat-ttt-ttc-aaa
i Macaca_arctoides.k141_416589             C 0 I 137
s Macaca_assamensis.Contig80                  961210 31 +   9119267 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Macaca_assamensis.Contig80               I 44 C 0
s Macaca_cyclopis.k119_883431                   2144 31 -     12002 ctc--aGactc-taac--a-ttaa-t----caa-ttt-ttc-aaa
i Macaca_cyclopis.k119_883431              I 170 n 103
s Macaca_fascicularis.k141_888912               1230 31 -     45859 ctc--agaccc-taac--a-ttaa-t----caa-ttt-ttc-aaa
i Macaca_fascicularis.k141_888912          I 44 n 103
s Macaca_fuscata.k119_959180                    5455 31 +     11606 ata--agatcC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Macaca_fuscata.k119_959180               I 39 I 42
s Macaca_leonina.k141_172241                    2711 31 -     27484 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Macaca_leonina.k141_172241               I 44 n 103
s Macaca_maura.k141_1765751                    10299 31 -     48667 ctc--agaccc-caac--a-ttaa-t----caa-ttt-ttc-aaa
i Macaca_maura.k141_1765751                I 44 C 0
s Macaca_mulatta.NC_041767.1                74734749 31 + 128056306 ctc--agaccc-taac--a-ttaa-t----caa-ttt-ttc-aaa
i Macaca_mulatta.NC_041767.1               I 170 n 103
s Macaca_nemestrina.KQ007637.1              13003029 31 +  21299586 ctc--agaccc-taac--a-ttaa-t----caa-ttt-ttc-aaa
i Macaca_nemestrina.KQ007637.1             n 103 n 103
s Macaca_nigra.k141_580096                     31904 31 -     56270 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Macaca_nigra.k141_580096                 I 44 n 103
s Macaca_radiata.k141_2031987                   2279 31 +     59341 CTC--AGACCC-TAAC--A-TTAA-T----CAT-TTT-TTC-AAA
i Macaca_radiata.k141_2031987              I 44 n 103
s Macaca_siberu.k141_204286                    11246 31 +     30583 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Macaca_siberu.k141_204286                I 44 I 133
s Macaca_silenus.Contig84                     962906 31 +   9193133 ctc--agaccc-taac--a-ttaa-t----caa-ttt-ttc-aaa
i Macaca_silenus.Contig84                  I 44 C 0
s Macaca_thibetana.k99_674455                   2141 31 -      5098 ctc--agaccc-taac--a-ttaa-t----caT-TTT-TTC-AAA
i Macaca_thibetana.k99_674455              I 160 n 103
s Macaca_tonkeana.k141_1979834                  2266 31 +     26550 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Macaca_tonkeana.k141_1979834             I 160 C 0
s Mandrillus_leucophaeus.scaffold228        12686217 31 -  20774610 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Mandrillus_leucophaeus.scaffold228       I 44 I 133
s Mandrillus_sphinx.Contig93                  913957 31 -   9270810 ctc--agaccc-taac--a-ttaa-t----caa-ttt-ttc-aaa
i Mandrillus_sphinx.Contig93               I 44 n 73
s Miopithecus_ogouensis.k141_69083             11506 31 -     35729 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Miopithecus_ogouensis.k141_69083         C 0 C 0
s Pan_paniscus.CM003390.1                   99458753 31 - 162613886 ATC--AGATCC-CAAC--A-TTaa-t----caa-ttt-ttc-aaa
i Pan_paniscus.CM003390.1                  I 16 I 38
s Pan_troglodytes.CM009245.2                57354805 31 + 156046543 ATC--AGATCC-CAAC--A-TTAa-t----caa-ttt-ttc-aaa
i Pan_troglodytes.CM009245.2               I 16 I 38
s Papio_anubis.CM001495.2                   34020485 37 - 183742232 ttccaaGACCA-TAAANNA-TTCAAT----CAA-TTTATTC-AAG
i Papio_anubis.CM001495.2                  C 0 I 5
s Papio_cynocephalus.k141_2026657              10373 31 +     45296 ctc--agaccc-taac--a-ttaa-t----caa-ttt-ttc-aaa
i Papio_cynocephalus.k141_2026657          I 160 I 134
s Papio_hamadryas.Contig48                  11402315 31 +  17843046 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Papio_hamadryas.Contig48                 I 44 I 134
s Papio_kindae.k141_5429907                     2410 31 -     26587 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Papio_kindae.k141_5429907                I 45 I 133
s Papio_papio.k141_1575386                      9683 31 +     19082 ctc--agaccc-taac--a-ttaa-t----caa-ctt-TTC-AAA
i Papio_papio.k141_1575386                 I 44 I 134
s Papio_ursinus.k141_1596938                    9999 31 -     18940 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Papio_ursinus.k141_1596938               I 44 n 103
s Piliocolobus_badius.k141_790724              28003 31 +     36280 TTC--AGACCC-CAAC--A-TCAA-T----CAA-TTT-TTC-AAT
i Piliocolobus_badius.k141_790724          C 0 C 0
s Piliocolobus_gordonorum.k141_763911          23025 31 -     32418 ttc--agaccc-caac--a-tcaa-t----caa-ttt-ttc-aaT
i Piliocolobus_gordonorum.k141_763911      C 0 C 0
s Piliocolobus_kirkii.k141_365592              22647 31 +     32298 TTC--AGACCC-CAAC--A-TCAA-T----CAA-ttt-ttc-aaT
i Piliocolobus_kirkii.k141_365592          C 0 C 0
s Piliocolobus_tephrosceles.PDMG02000047.1  44085321 31 +  46020825 TTC--AGACCC-CAAC--A-TCAA-T----CAA-TTT-TTC-AAT
i Piliocolobus_tephrosceles.PDMG02000047.1 C 0 C 0
s Pongo_abelii.CM009269.2                  128598768 31 - 145408105 ATC--AGATCT-CAAC--A-TTAa-t----caa-ttt-ttc-aaa
i Pongo_abelii.CM009269.2                  I 16 C 0
s Pongo_pygmaeus.ctg463                       334802 31 +    482523 ATC--AGATCT-CAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Pongo_pygmaeus.ctg463                    I 412 C 0
s Presbytis_comata.k141_1347401                12230 31 +     13139 TTC--AGACCC-TAAC--A-TTCA-T----CAA-TTT-TTC-AAG
i Presbytis_comata.k141_1347401            C 0 n 0
s Presbytis_mitrata.k141_1109549                4249 31 +      7485 TTC--AGACCC-TAAC--A-TTCA-T----CAA-TTT-TTC-AAG
i Presbytis_mitrata.k141_1109549           C 0 n 0
s Semnopithecus_entellus.k141_1708538          14614 31 -     26984 ttc--agaccc-caac--a-tcaa-t----caa-ttt-ttc-aAT
i Semnopithecus_entellus.k141_1708538      C 0 C 0
s Semnopithecus_hypoleucos.k141_850753          3776 31 -     10549 ttc--agaccc-caac--a-tcaa-t----caa-ttt-ttc-aaT
i Semnopithecus_hypoleucos.k141_850753     C 0 C 0
s Semnopithecus_johnii.k141_42276              13625 31 -     26009 ttc--agaccc-caac--a-TCaa-T----CAA-ttt-ttc-aAT
i Semnopithecus_johnii.k141_42276          C 0 C 0
s Semnopithecus_priam.k141_790003              13592 31 -     25785 ttc--agaccc-caac--a-tcaa-t----caa-ttt-ttc-aaT
i Semnopithecus_priam.k141_790003          C 0 C 0
s Semnopithecus_schistaceus.k141_41818         14613 31 -     26983 TTC--AGACCC-CAAC--A-TCAA-T----CAA-TTT-TTC-AAT
i Semnopithecus_schistaceus.k141_41818     C 0 C 0
s Semnopithecus_vetulus.k141_462032            13145 31 -     25394 TTC--AGACCC-CAAC--A-TCAA-T----CAA-TTT-TTC-AAT
i Semnopithecus_vetulus.k141_462032        C 0 C 0
s Theropithecus_gelada.CM009964.1           73631029 31 + 126097711 CTC--AGACCC-TAAC--A-TTAA-T----CAA-TTT-TTC-AAA
i Theropithecus_gelada.CM009964.1          I 237 n 103
s Trachypithecus_auratus.k141_87776            13539 31 +     25996 TTC--AGACCC-CAAC--A-TCAA-T----CAA-TTT-TTC-AAT
i Trachypithecus_auratus.k141_87776        C 0 C 0
s Trachypithecus_crepusculus.k141_1094728       9829 31 +     10201 TTC--AGACCC-CAAC--A-TCAA-T----CAA-TTT-TTC-AAT
i Trachypithecus_crepusculus.k141_1094728  C 0 C 0
s Trachypithecus_cristatus.k141_744752         13531 31 -     25745 ttc--agaccc-caac--a-tcaa-t----caa-ttt-ttc-aaT
i Trachypithecus_cristatus.k141_744752     C 0 C 0
s Trachypithecus_francoisi.k141_1456919        10075 31 +     19237 ttc--agaccc-caac--a-tcaa-t----caa-ttt-ttc-aaT
i Trachypithecus_francoisi.k141_1456919    C 0 C 0
s Trachypithecus_geei.k141_304630              14980 31 -     38632 ttc--agaccc-caac--a-tcaa-t----caa-ttt-ttc-aaT
i Trachypithecus_geei.k141_304630          C 0 C 0
s Trachypithecus_germaini.k141_847984          14415 31 -     19509 TTC--AGACCC-CAAC--A-TCAA-T----CAA-TTT-TTC-AAT
i Trachypithecus_germaini.k141_847984      C 0 C 0
s Trachypithecus_hatinhensis.k141_710675        9837 31 +     19025 TTC--AGACTC-CAAC--A-TCAA-T----CAA-TTT-TTC-AAT
i Trachypithecus_hatinhensis.k141_710675   C 0 C 0
s Trachypithecus_laotum.k141_1184199            9835 31 +     19025 ttc--agaccc-caac--a-tcaa-t----caa-ttt-ttc-aaT
i Trachypithecus_laotum.k141_1184199       C 0 C 0
s Trachypithecus_leucocephalus.k141_754018      5631 31 +      9450 ttc--agaccc-caac--a-tcaa-t----caa-ttt-ttc-aaT
i Trachypithecus_leucocephalus.k141_754018 C 0 C 0
s Trachypithecus_melamera.k141_163048           9839 31 -     12058 TTC--AGACCC-CAAC--A-TCAA-T----CAA-TTT-TTC-AAT
i Trachypithecus_melamera.k141_163048      C 0 C 0
s Trachypithecus_obscurus.k141_624813          13541 31 +     22239 TTC--AGACCC-CAAC--A-TCAA-T----CAA-TTT-TTC-AAT
i Trachypithecus_obscurus.k141_624813      C 0 C 0
s Trachypithecus_phayrei.ctg1353               13843 31 -     54039 ttc--agaccc-caac--a-tcaa-t----caa-ttt-ttc-aat
i Trachypithecus_phayrei.ctg1353           C 0 C 0
e Rhinopithecus_strykeri.ctg20              25380027  0 +  26372126 I
e Rhinopithecus_bieti.k119_488595               4046  0 +      6941 I
e Pygathrix_nigripes_b.ctg270                   2252904  0 +   3288884 I
e Pygathrix_cinerea.k141_1655762               11071 98 +     56938 I
e Nasalis_larvatus.k141_505618                  4009  0 +      4009 I

a score=0.000000
s hg38.chrM                                    12693 46 +     16569 TA----T-----CT----ACTCA----TCTT--------------CCTAAT---TACC-------ATACTAATCTTAGTT-ACCGC------------TA
s Allenopithecus_nigroviridis.k141_3930415      8538 46 -     11164 ta----ttta-ctt----a--------tttt--------------cctcac---caaa-------atattaattctagtt-attgc------------ca
i Allenopithecus_nigroviridis.k141_3930415 I 27 I 90
s Allochrocebus_lhoesti.k141_1527163            3488 46 +      8312 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Allochrocebus_lhoesti.k141_1527163       n 73 n 73
s Allochrocebus_preussi.k141_2033389            2469 46 +     13548 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTC-ATTGC------------CA
i Allochrocebus_preussi.k141_2033389       n 73 n 73
s Allochrocebus_solatus.k141_1287866            4606 46 +     13631 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTC-ATTGC------------CA
i Allochrocebus_solatus.k141_1287866       I 43 C 0
s Cercocebus_atys.KQ011505.1                 2105578 46 +   2368337 tATCTAC-----TT----A--------TCTT--------------TCTCAC---TGCT-------ATATTAATTCTAGTC-ACTGC------------CA
i Cercocebus_atys.KQ011505.1               n 103 I 92
s Cercocebus_chrysogaster.k141_1327900          3698 46 -      8025 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATTGC------------CA
i Cercocebus_chrysogaster.k141_1327900     n 103 I 152
s Cercocebus_lunulatus.k141_4324092             1239 46 +      2664 TATCtac-----tt----a--------tctT--------------TCTCAC---CGCT-------ATATTAATTCTAGTC-actgc------------ca
i Cercocebus_lunulatus.k141_4324092        n 163 I 92
s Cercocebus_torquatus.k141_72584               3248 46 +     30577 tatctac-----tt----a--------tctt--------------tctcac---cgct-------atattaattctagtc-actgc------------ca
i Cercocebus_torquatus.k141_72584          n 103 I 92
s Cercopithecus_ascanius.k141_395955             976 37 +     10858 ------------tt----a--------tttt--------------cttCAT---CACA-------ATATTAATTCTGGTT-Actgc--------------
i Cercopithecus_ascanius.k141_395955       I 34 I 2
s Cercopithecus_cephus.k141_294495              2439 37 -      5583 ------------tt----a--------tttt--------------cttcat---caca-------gtattaattctggtt-actgc--------------
i Cercopithecus_cephus.k141_294495         I 34 I 32
s Cercopithecus_diana.k141_613362               1449 46 +      1541 TATCTTC-----tt----a--------tttt--------------cctcac---cact-------atattaattctagtt-actgc------------ca
i Cercopithecus_diana.k141_613362          n 137 n 137
s Cercopithecus_hamlyni.k141_670643              632 46 -      2013 TATCTTC-----TT----A--------TTTT--------------CCTCAC---CACT-------ATATTAATTCTAGTT-ACTGC------------CA
i Cercopithecus_hamlyni.k141_670643        n 72 I 92
s Cercopithecus_lowei.k141_3362039               882 46 -      3644 TA----T-TTGCTT----A--------TCTT--------------CCTCAC---CACA-------ATATTAATTCTAGTT-ACTGC------------CA
i Cercopithecus_lowei.k141_3362039         I 194 C 0
s Cercopithecus_albogularis.ctg631                   22160 46 -     59035 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Cercopithecus_albogularis.ctg631               I 45 I 178
s Cercopithecus_mona.ctg685                     4850 46 +     45802 ta----ttta-ctt----a--------tttt--------------cctcac---caaa-------atattaattctagtt-atcgc------------ca
i Cercopithecus_mona.ctg685                n 42 n 42
s Cercopithecus_neglectus.k141_1687115         13169 46 -     23765 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Cercopithecus_neglectus.k141_1687115     n 137 n 137
s Cercopithecus_nictitans.k141_1223731           435 46 +      3670 TA----T-TTACTT----A--------TCTT--------------CCTCAC---CACA-------ATATTAATTCTAGTT-ACTGC------------CA
i Cercopithecus_nictitans.k141_1223731     n 103 n 103
s Cercopithecus_petaurista.k141_2099380          960 46 +      5360 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGT------------CA
i Cercopithecus_petaurista.k141_2099380    n 103 n 103
s Cercopithecus_pogonias.k141_1128599            294 46 +      1109 ta----ttt-gctt----a--------tctt--------------cctcac---caca-------atattaattctagtt-actgc------------ca
i Cercopithecus_pogonias.k141_1128599      I 194 C 0
s Cercopithecus_roloway.k141_2348395           14518 46 -     24522 TA----T-TTACTC----A--------TTTT--------------CCTCAC---CAGA-------ATATTAATTCTTATT-ACTGC------------CA
i Cercopithecus_roloway.k141_2348395       I 75 n 73
s Chlorocebus_aethiops.ctg56                12889512 37 +  17892486 ------------tt----a--------tttt--------------cttCAT---CACA-------ATATTAATTCTGGTT-ACTGC--------------
i Chlorocebus_aethiops.ctg56               I 34 I 2
s Chlorocebus_pygerythrus.k141_1442421          3099 46 -     16834 ta----ttta-ctt----a--------tttt--------------cctcac---caaa-------atattaattctagtc-attgc------------ca
i Chlorocebus_pygerythrus.k141_1442421     n 46 I 180
s Chlorocebus_sabaeus.KE148060.1              172582 46 +    254123 ta----ttta-ctt----a--------tttt--------------cctcaC---CAAA-------ATATTAATCCTAGTT-ATCGC------------CA
i Chlorocebus_sabaeus.KE148060.1           I 196 n 137
s Colobus_angolensis.KN985517.1              7795363 46 -   8529303 TA----T-CTCCTT----A--------TTTT--------------CCTtat---caca-------atattaattctaatt-ACTGC------------TA
i Colobus_angolensis.KN985517.1            n 0 n 0
s Colobus_guereza.LG10                      68644191 46 - 143646016 ta----tct-cctt----a--------tttt--------------ccttat---caca-------atattaattctaatt-accgc------------ta
i Colobus_guereza.LG10                     n 42 n 42
s Colobus_polykomos.k141_286489                 4054 42 +     39754 TA----c-----tc----a--------tttt--------------cctcat---caca-------atattaattcttgtt-actgc------------ca
i Colobus_polykomos.k141_286489            C 0 C 0
s Erythrocebus_patas.Contig114                871635 46 -   6746984 TA----C-TTACTT----A--------CTTT--------------CCTCAT---CACA-------ATACGAATTCTGGTT-ACCGG------------CA
i Erythrocebus_patas.Contig114             C 0 n 0
s Gorilla_beringei.k141_1529327                16741 38 +     19115 TA----T-----TT----A--------TTTT--------------CCTCAC---CGCA-------ATATT----CTAGTT-ACCAC------------CA
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg1117                 66251 57 -     75524 -A----T-CTACTT----A--------TTTT--------------CCTCTT---TATG-------AAATTAATTCTGGTT-ACTGCCAAAATATCTTTCA
i Lophocebus_aterrimus.ctg1117             n 133 n 133
s Macaca_arctoides.k141_2393704                18462 46 +     36293 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Macaca_arctoides.k141_2393704            n 137 n 137
s Macaca_assamensis.Contig80                  961241 46 +   9119267 TA----C-TTACTT----A--------CTTT--------------CCTCAT---CACA-------ATACGAATTCTGGTT-ACCGG------------CA
i Macaca_assamensis.Contig80               C 0 n 0
s Macaca_cyclopis.k119_1007290                 16043 46 -     20333 ta----ttta-ctt----a--------tttT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Macaca_cyclopis.k119_1007290             n 103 I 152
s Macaca_fascicularis.k141_1173983             18775 46 -     25728 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Macaca_fascicularis.k141_1173983         I 332 I 90
s Macaca_fuscata.k119_424838                   14957 46 +     21166 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Macaca_fuscata.k119_424838               n 42 I 152
s Macaca_leonina.k141_2531048                   6922 46 +     22467 TA----T-TTACTT----A--------Tttt--------------cctcac---caaa-------atattaattctagtt-atcgc------------ca
i Macaca_leonina.k141_2531048              n 103 n 103
s Macaca_maura.k141_1765751                    10330 46 -     48667 ta----ctta-ctt----a--------cttt--------------cctcat---caca-------atacgaattctggtt-actgg------------ca
i Macaca_maura.k141_1765751                C 0 I 91
s Macaca_mulatta.NC_041756.1                58576842 46 + 185288947 ta----ttta-ctt----c--------tttt--------------cctcAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Macaca_mulatta.NC_041756.1               n 103 n 103
s Macaca_nemestrina.KQ004951.1               2234309 46 +   6857701 TATCTAC-----TT----A--------TCTT--------------TCTCAC---CACT-------ATATTAATTCTAGTC-ACTGC------------CA
i Macaca_nemestrina.KQ004951.1             n 103 I 92
s Macaca_nigra.k141_563100                      8814 46 +     15148 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Macaca_nigra.k141_563100                 I 332 I 90
s Macaca_radiata.k141_3979652                  13031 46 +     19446 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Macaca_radiata.k141_3979652              n 103 n 103
s Macaca_siberu.k141_780928                    15687 46 +     22516 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Macaca_siberu.k141_780928                n 133 I 177
s Macaca_silenus.Contig84                     962937 46 +   9193133 ta----ttta-ctt----a--------cttt--------------cctcat---caca-------atacgaattctggtt-accgg------------ca
i Macaca_silenus.Contig84                  C 0 n 0
s Macaca_thibetana.k99_294854                  11747 46 -     18170 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGTT-ATCGC------------CA
i Macaca_thibetana.k99_294854              n 103 n 103
s Macaca_tonkeana.k141_1979834                  2297 46 +     26550 TA----C-TTACTT----A--------CTTT--------------CCTCAT---CACA-------ATACGAATTCTGGTT-ACCGG------------CA
i Macaca_tonkeana.k141_1979834             C 0 I 91
s Mandrillus_leucophaeus.scaffold152971        18324 46 -     24738 ta----ttta-ctt----a--------tttt--------------cctcac---caaa-------atattaattctagtt-attgc------------ca
i Mandrillus_leucophaeus.scaffold152971    n 133 n 133
s Mandrillus_sphinx.Contig399                 116549 46 -    171968 ta----ttta-ctt----a--------tttt--------------cctcac---caaa-------atattaattctagtt-atcgc------------ca
i Mandrillus_sphinx.Contig399              n 73 n 73
s Miopithecus_ogouensis.k141_69083             11537 46 -     35729 TA----C-TTACTT----A--------CTTT--------------CCTCAT---CACA-------ATACGAATTCTGGTT-ACCGG------------CA
i Miopithecus_ogouensis.k141_69083         C 0 I 91
s Pan_paniscus.CM003385.1                  131191603 46 + 247869975 ta----t-----tt----actta----tttt--------------ccacAC---CACA-------ATATTAATTCTAGTT-ACCGC------------CA
i Pan_paniscus.CM003385.1                  I 31 I 90
s Pan_troglodytes.CM009240.2               110737199 46 - 128755405 ta----t-----tt----acttg----tttt--------------ccACAC---CACA-------ATATTAATTCTAGTT-ACCGC------------CA
i Pan_troglodytes.CM009240.2               I 31 I 90
s Papio_anubis.CM001495.2                   34020527 49 - 183742232 ------------------a--------tcaaaaaaaaaaaaaaaatttcat---caca-------ATATTAATTCTGGTT-ACTGC--------------
i Papio_anubis.CM001495.2                  I 5 I 2
s Papio_cynocephalus.k141_3719535               5113 57 +      6274 -A----T-CTACTT----A--------TTTT--------------CCTCTT---TATG-------AAATTAATTCTGGTT-ACTGCCAAAATATCTTTCA
i Papio_cynocephalus.k141_3719535          I 93 n 134
s Papio_hamadryas.Contig36                  14843778 35 +  22161365 ------------------a--------tttt--------------cttCAT---CACA-------ATATTAATTCTGGTT-ACTGC--------------
i Papio_hamadryas.Contig36                 I 36 I 2
s Papio_kindae.k141_6307720                     2883 57 -      3308 -A----T-CTACTT----A--------TTTT--------------CCTCTT---TATG-------AAATTAATTCTGGTT-ACTGCCAAAATATCTTTCA
i Papio_kindae.k141_6307720                I 93 n 133
s Papio_papio.k141_3011620                     18043 57 +     19208 -A----T-CTACTT----A--------TTTT--------------CCTCTT---TATG-------AAATTAATTCTGGTT-ACTGCCAAAATATCTTTCA
i Papio_papio.k141_3011620                 I 93 n 134
s Papio_ursinus.k141_524563                     3353 57 -      4494 -A----T-CTACTT----A--------TTTT--------------CCTCTT---TATG-------AAATTAATTCTGGTT-ACTGCCAAAATATCTTTCA
i Papio_ursinus.k141_524563                I 93 n 103
s Piliocolobus_badius.k141_790724              28034 54 +     36280 -A----T-CTACTT----A--------TTTT--------------CCTCATAAGTATTTCCTCATACATATTTTCTGGTT-ACTGC------------C-
i Piliocolobus_badius.k141_790724          C 0 n 0
s Piliocolobus_gordonorum.k141_763911          23056 44 -     32418 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Piliocolobus_gordonorum.k141_763911      C 0 n 0
s Piliocolobus_kirkii.k141_365592              22678 44 +     32298 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Piliocolobus_kirkii.k141_365592          C 0 n 0
s Piliocolobus_tephrosceles.PDMG02000047.1  44085352 44 +  46020825 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Piliocolobus_tephrosceles.PDMG02000047.1 C 0 n 0
s Pongo_abelii.CM009269.2                  128598799 42 - 145408105 ta----t-----tt----a--------tttt--------------cctcac---tACA-------ATATTAATTCTAGTT-ACCGC------------CA
i Pongo_abelii.CM009269.2                  C 0 I 93
s Pongo_pygmaeus.ctg463                       334833 42 +    482523 ta----t-----tt----a--------tttT--------------CCTCAC---TACA-------ATATTAATTCTAGTT-ACCGC------------CA
i Pongo_pygmaeus.ctg463                    C 0 I 30
s Presbytis_comata.k141_1013241                18481 46 +     21385 ta----ttta-ctt----a--------tttt--------------cctcac---caaa-------atattaattctagct-attgc------------ca
i Presbytis_comata.k141_1013241            I 43 I 30
s Presbytis_mitrata.k141_2005050               12675 46 +     23059 TA----T-TTACTT----A--------TTTT--------------CCTCAC---CAAA-------ATATTAATTCTAGCT-ATTGC------------CA
i Presbytis_mitrata.k141_2005050           I 43 I 90
s Semnopithecus_entellus.k141_1708538          14645 44 -     26984 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Semnopithecus_entellus.k141_1708538      C 0 N 0
s Semnopithecus_hypoleucos.k141_850753          3807 44 -     10549 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Semnopithecus_hypoleucos.k141_850753     C 0 N 0
s Semnopithecus_johnii.k141_42276              13656 44 -     26009 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Semnopithecus_johnii.k141_42276          C 0 N 0
s Semnopithecus_priam.k141_790003              13623 44 -     25785 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Semnopithecus_priam.k141_790003          C 0 N 0
s Semnopithecus_schistaceus.k141_41818         14644 44 -     26983 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Semnopithecus_schistaceus.k141_41818     C 0 N 0
s Semnopithecus_vetulus.k141_462032            13176 44 -     25394 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Semnopithecus_vetulus.k141_462032        C 0 N 0
s Theropithecus_gelada.QGDE01007599.1           2167 57 +      2256 -A----TCta-ctt----a--------tttt--------------cctctt---tacG-------AAATTAATTCTGGTT-ACTGCCAAAATATCTTTCA
i Theropithecus_gelada.QGDE01007599.1      I 93 n 103
s Trachypithecus_auratus.k141_87776            13570 44 +     25996 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_auratus.k141_87776        C 0 N 0
s Trachypithecus_crepusculus.k141_1094728       9860 44 +     10201 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_crepusculus.k141_1094728  C 0 N 0
s Trachypithecus_cristatus.k141_744752         13562 44 -     25745 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_cristatus.k141_744752     C 0 N 0
s Trachypithecus_francoisi.k141_1456919        10106 44 +     19237 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_francoisi.k141_1456919    C 0 N 0
s Trachypithecus_geei.k141_304630              15011 44 -     38632 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_geei.k141_304630          C 0 N 0
s Trachypithecus_germaini.k141_847984          14446 44 -     19509 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_germaini.k141_847984      C 0 N 0
s Trachypithecus_hatinhensis.k141_710675        9868 44 +     19025 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_hatinhensis.k141_710675   C 0 N 0
s Trachypithecus_laotum.k141_1184199            9866 44 +     19025 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_laotum.k141_1184199       C 0 N 0
s Trachypithecus_leucocephalus.k141_754018      5662 44 +      9450 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_leucocephalus.k141_754018 C 0 N 0
s Trachypithecus_melamera.k141_163048           9870 44 -     12058 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_melamera.k141_163048      C 0 n 0
s Trachypithecus_obscurus.k141_624813          13572 44 +     22239 -A----T-CTACTT----A--------TTTT--------------CCTCAT---TATG-------AAATTAATTCTGGTT-ACTGC------------C-
i Trachypithecus_obscurus.k141_624813      C 0 N 0
s Trachypithecus_phayrei.ctg1353               13874 44 -     54039 -a----tcta-ctt----a--------tttt--------------cctcat---tatg-------aaattaattctggtt-actgc------------c-
i Trachypithecus_phayrei.ctg1353           C 0 N 0
e Rhinopithecus_strykeri.ctg20              25380027  0 +  26372126 I
e Rhinopithecus_bieti.k119_488595               4046  0 +      6941 I
e Pygathrix_nigripes_b.ctg270                   2252904  0 +   3288884 I
e Pygathrix_cinerea.k141_1655762               11071 98 +     56938 I
e Nasalis_larvatus.k141_505618                  4009  0 +      4009 I

a score=0.000000
s hg38.chrM                                    12739 30 +     16569 AC----------AA-CCTATTCCAAC-TGTTCATCGGCTG-------AG
s Allenopithecus_nigroviridis.k141_1132383     15417 30 +     82989 ac----------aa-cctctttcaac-ttttcattggctg-------ag
i Allenopithecus_nigroviridis.k141_1132383 n 90 I 152
s Allochrocebus_lhoesti.k141_1513956            8317 30 +     44761 AC----------AA-CCTCTTTCAGC-TCTTTATCAGACG-------GG
i Allochrocebus_lhoesti.k141_1513956       I 73 C 0
s Allochrocebus_preussi.k141_3466725            8334 30 +     53249 ac----------aa-cctctttcagc-tctttatcagacg-------gg
i Allochrocebus_preussi.k141_3466725       I 73 C 0
s Allochrocebus_solatus.k141_1287866            4652 30 +     13631 AC----------AA-TCTTTTTCAAC-TTTTTATTGGATG-------AG
i Allochrocebus_solatus.k141_1287866       C 0 I 60
s Cercocebus_atys.KQ010367.1                11408400 30 -  11668111 AC----------Aa-cctttttcaac-tttttatcgGATG-------AG
i Cercocebus_atys.KQ010367.1               I 112 I 60
s Cercocebus_chrysogaster.k141_1945715         89410 30 -    105757 AC----------AA-CCTTTTTCAAC-TTTTTATCGGATG-------AG
i Cercocebus_chrysogaster.k141_1945715     I 112 I 60
s Cercocebus_lunulatus.k141_4864552             1674 30 -     47348 AC----------AA-CCTTTTTCAAC-TTTTTATCGGATG-------AG
i Cercocebus_lunulatus.k141_4864552        I 130 n 92
s Cercocebus_torquatus.k141_1852545             5367 30 +     49255 AC----------AA-CCTTTTTCAAC-TTTTTATCGGATG-------AG
i Cercocebus_torquatus.k141_1852545        I 112 n 92
s Cercopithecus_ascanius.k141_395955            1015 30 +     10858 ac----------aa-cctctttcagc-tctttatcagacg-------gg
i Cercopithecus_ascanius.k141_395955       I 2 C 0
s Cercopithecus_cephus.k141_2404415            10829 30 +     17637 TC----------AA-CCTCTTTCAAC-TCTGTATCAGATA-------AG
i Cercopithecus_cephus.k141_2404415        I 42 I 61
s Cercopithecus_diana.k141_2154515              3138 30 -      9500 ac----------aA-CCTCTTCCAAC-TtttTATCAGATG-------GA
i Cercopithecus_diana.k141_2154515         n 137 I 62
s Cercopithecus_hamlyni.k141_919039             7234 30 -      9321 ac----------aa-cctcttccaac-tttttatcagatg-------ga
i Cercopithecus_hamlyni.k141_919039        n 92 n 92
s Cercopithecus_lowei.k141_3362039               928 30 -      3644 AC----------AA-CCTTTTTCAAC-TTTGTATCAGATG-------AG
i Cercopithecus_lowei.k141_3362039         C 0 I 61
s Cercopithecus_albogularis.ctg213                 2144410 30 +   2308918 AC----------AA-CCTCTTCCAAC-TTTTTATCAGATG-------GA
i Cercopithecus_albogularis.ctg213               n 178 I 62
s Cercopithecus_mona.ctg93                    938625 30 +   9558045 TC----------AA-CCTCTTTCAAC-TCTGTATCAGATA-------AG
i Cercopithecus_mona.ctg93                 I 42 n 42
s Cercopithecus_neglectus.k141_1316281          3805 30 +      4583 AC----------AA-CCTCTTCCAAC-TTTTTATCAGATG-------GA
i Cercopithecus_neglectus.k141_1316281     n 137 I 62
s Cercopithecus_nictitans.k141_701113           7288 30 -     10034 ac----------aa-cttcttccaac-tttttatcagatg-------ga
i Cercopithecus_nictitans.k141_701113      n 103 I 62
s Cercopithecus_petaurista.k141_1267320         8051 30 +     62060 AC----------AA-CCTCTTCCAAC-TTTTTATCAGATG-------GA
i Cercopithecus_petaurista.k141_1267320    n 103 I 62
s Cercopithecus_pogonias.k141_1128599            340 30 +      1109 ac----------aa-cctttttcaac-tttgtatcagatg-------ag
i Cercopithecus_pogonias.k141_1128599      C 0 I 61
s Cercopithecus_roloway.k141_2783013           28327 30 -     43083 AC----------AA-CCTCTTTCAGC-TCTTTATCAGATG-------GG
i Cercopithecus_roloway.k141_2783013       I 73 C 0
s Chlorocebus_aethiops.ctg56                12889551 30 +  17892486 AC----------AA-CCTCTTTCAGC-TCTTTATCAGACG-------GG
i Chlorocebus_aethiops.ctg56               I 2 C 0
s Chlorocebus_pygerythrus.k141_1337201         12195 30 -     14715 TC----------AA-CCTCTTTCAAC-TCTGTATCAGATA-------AG
i Chlorocebus_pygerythrus.k141_1337201     I 46 I 61
s Chlorocebus_sabaeus.CM001947.1            33758462 30 - 135778131 ac----------aa-cctctttcagc-tctttatcagacg-------gg
i Chlorocebus_sabaeus.CM001947.1           I 73 C 0
s Colobus_angolensis.KN982371.1              2055309 30 +   2419031 AC----------AA-CCTCTTCCAAC-TTTTTATCAGATG-------GG
i Colobus_angolensis.KN982371.1            n 0 n 0
s Colobus_guereza.LG21                      56922850 30 +  77344527 AT----------aa-cctctttcagc-tttttatcagatg-------ag
i Colobus_guereza.LG21                     I 42 N 0
s Colobus_polykomos.k141_286489                 4096 30 +     39754 at----------aa-cctctttcagc-tttttatgggatg-------ag
i Colobus_polykomos.k141_286489            C 0 n 0
s Erythrocebus_patas.Contig40               15742362 30 +  21278523 AC----------AA-CCTCTTTCAGC-TCTTTATCAGACG-------GG
i Erythrocebus_patas.Contig40              I 73 C 0
s Gorilla_beringei.k141_1529327                16779 40 +     19115 ACCTTTTTTCACAA-CCTTTTTCAAC-TTCTTGTCAGATG-------AG
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg653                1050480 30 +   1282537 AC----------AA-CCTTTTTCAAC-TTTTTATCGGATG-------AG
i Lophocebus_aterrimus.ctg653              n 133 I 120
s Macaca_arctoides.k141_1473862                 5466 30 -     32707 ac----------aa-cctttttcaac-tttttatcggatg-------ag
i Macaca_arctoides.k141_1473862            I 317 I 148
s Macaca_assamensis.Contig309                 255203 30 +    298279 ac----------aa-cctttttcaac-tttttatcggatg-------ag
i Macaca_assamensis.Contig309              n 0 n 0
s Macaca_cyclopis.k119_897545                   4474 30 -     10490 AC----------AA-CCTTTTTCAAC-TTTTTATCGGATG-------AG
i Macaca_cyclopis.k119_897545              I 112 n 152
s Macaca_fascicularis.k141_303218              18825 30 +     58069 ac----------aa-cctttttcaac-tttttatcggatg-------ag
i Macaca_fascicularis.k141_303218          I 317 n 90
s Macaca_fuscata.k119_959180                    5528 30 +     11606 ac----------aa-cctttttcaac-tttttatcggatg-------ag
i Macaca_fuscata.k119_959180               I 42 I 60
s Macaca_leonina.k141_3096853                  28746 30 +     75049 ac----------aa-cctttttcaac-tttttatcggatg-------ag
i Macaca_leonina.k141_3096853              I 651 n 103
s Macaca_maura.k141_1787844                     5438 30 +     56079 ac----------aa-cctttttcaac-tttttatcggatg-------ag
i Macaca_maura.k141_1787844                n 91 n 91
s Macaca_mulatta.NC_041756.1                54488486 30 + 185288947 AC----------Aa-cctttttcaac-tttttatcgGATG-------AG
i Macaca_mulatta.NC_041756.1               n 103 I 60
s Macaca_nemestrina.KQ006940.1               9376608 30 -  10413719 AC----------Aa-cctttttcaac-tttttatcaGATG-------AG
i Macaca_nemestrina.KQ006940.1             I 112 n 92
s Macaca_nigra.k141_2429718                    39944 30 -     45998 ac----------aa-cctttttcaac-tttttatcagatg-------ag
i Macaca_nigra.k141_2429718                n 90 n 90
s Macaca_radiata.k141_3789419                  18815 30 +     33918 AC----------AA-CCTTTTTCAAC-TTTTTATCGGATG-------AG
i Macaca_radiata.k141_3789419              I 130 n 103
s Macaca_siberu.k141_648104                     5473 30 +     12376 AC----------AA-CCTTTTTCAAC-TTTTTATCGGATG-------AG
i Macaca_siberu.k141_648104                I 651 n 177
s Macaca_silenus.Contig1                    14194660 30 +  84276269 ac----------aa-cctctttcagc-tctttatcagatg-------gg
i Macaca_silenus.Contig1                   I 73 C 0
s Macaca_thibetana.k99_179800                   4450 30 +     12326 AC----------AA-CCTTTTTCAAC-TTTTTATCGGATG-------AG
i Macaca_thibetana.k99_179800              I 112 I 60
s Macaca_tonkeana.k141_305781                  17176 30 +     94123 AC----------AA-CCTTTTCCAAC-TTTTTATCGGATG-------AG
i Macaca_tonkeana.k141_305781              I 317 I 117
s Mandrillus_leucophaeus.scaffold873          507222 30 -    706679 ac----------aa-cctttttcaac-tttttatcggatg-------ag
i Mandrillus_leucophaeus.scaffold873       n 133 n 133
s Mandrillus_sphinx.Contig7                 14441166 30 +  51421834 AC----------AA-CCTCTTTCAGC-TCTTTATCAGATG-------GG
i Mandrillus_sphinx.Contig7                I 73 C 0
s Miopithecus_ogouensis.k141_1060846           14143 30 +     17472 AC----------AA-CCTCTTCCAAC-TTTTTATCGGATG-------GG
i Miopithecus_ogouensis.k141_1060846       n 91 C 0
s Pan_paniscus.CM003390.1                   99458822 40 - 162613886 ACCTTTTTTCACAA-CCTTTTTCAAC-TTCTTGTCAGATA-------AG
i Pan_paniscus.CM003390.1                  I 38 C 0
s Pan_troglodytes.CM009245.2                57354874 40 + 156046543 ACCTTTTTTCACAA-CCTTTTTCAAC-TTCTTGTCAGATA-------AG
i Pan_troglodytes.CM009245.2               I 38 C 0
s Papio_anubis.CM001495.2                   34020578 30 - 183742232 AC----------AA-TCTCTTTCAGC-TCTTTATCAGATG-------GG
i Papio_anubis.CM001495.2                  I 2 C 0
s Papio_cynocephalus.k141_3949568               7368 30 -      8346 ac----------aa-cctttttcaac-tttttatcggatg-------ag
i Papio_cynocephalus.k141_3949568          I 112 I 133
s Papio_hamadryas.Contig36                  14843815 30 +  22161365 AC----------AA-Tctctttcagc-tctttatcagatg-------gg
i Papio_hamadryas.Contig36                 I 2 C 0
s Papio_kindae.k141_5192634                     6140 30 -      7104 ac----------aa-cctttttcaac-tTTTTATCGGATG-------AG
i Papio_kindae.k141_5192634                I 317 I 120
s Papio_papio.k141_2436119                     35077 30 -     56783 ac----------aa-tctctttcagc-tctttatcagatg-------gg
i Papio_papio.k141_2436119                 I 73 C 0
s Papio_ursinus.k141_2210532                    3777 30 -     48888 AC----------AA-CCTTTTTCAAC-TTTTTATCGGATG-------AG
i Papio_ursinus.k141_2210532               n 103 n 103
s Piliocolobus_badius.k141_1905544              9866 30 -     59732 at----------aa-cctctttcagc-tttttatcggatg-------ag
i Piliocolobus_badius.k141_1905544         n 0 n 0
s Piliocolobus_gordonorum.k141_399085           7988 30 -     13842 ac----------aa-cctcttccaac-tttttatcagatg-------gg
i Piliocolobus_gordonorum.k141_399085      I 93 I 122
s Piliocolobus_kirkii.k141_1370971              7202 30 -     12918 AC----------AA-CCTCTTCCAAC-TTTTTATCAGATG-------GG
i Piliocolobus_kirkii.k141_1370971         n 0 I 122
s Piliocolobus_tephrosceles.PDMG02000233.1   3180334 30 -   6685569 ac----------aa-cctcttccaac-tttttatcagatg-------gg
i Piliocolobus_tephrosceles.PDMG02000233.1 n 0 n 0
s Pongo_abelii.CM009264.2                     449185 30 + 129937803 AC----------Aa-cctttttcaac-tttttattggATG-------AG
i Pongo_abelii.CM009264.2                  I 73 I 61
s Pongo_pygmaeus.ctg463                       317864 30 -    482523 AC----------AA-CCTTTTTCAAC-TTTTTATTGGATG-------AG
i Pongo_pygmaeus.ctg463                    I 81 I 61
s Presbytis_comata.k141_679163                 68501 30 +     72816 ac----------aa-cctctttcaac-tttttattGGATG-------AG
i Presbytis_comata.k141_679163             n 30 I 152
s Presbytis_mitrata.k141_605190                26474 30 +     42743 AC----------AA-CCTCTTTCAAC-TTTTTATTGGATG-------AG
i Presbytis_mitrata.k141_605190            I 572 C 0
s Theropithecus_gelada.CM009952.1          182322776 30 - 183260707 AC----------Aa-cctttttcaac-tttttatcgGATG-------AG
i Theropithecus_gelada.CM009952.1          I 112 I 60
e Trachypithecus_melamera.k141_163048           9914  0 -     12058 I
e Rhinopithecus_strykeri.ctg20              25380027  0 +  26372126 I
e Rhinopithecus_bieti.k119_488595               4046  0 +      6941 I
e Pygathrix_nigripes_b.ctg270                   2252904  0 +   3288884 I
e Pygathrix_cinerea.k141_1655762               11071 98 +     56938 I
e Nasalis_larvatus.k141_505618                  4009  0 +      4009 I

a score=0.000000
s hg38.chrM                                    12769 61 +     16569 AGGGCGTAGGAATTAT-A-----T----CCTTCTT-GCTCATCAG-----------------TTG---ATGATACGC------CCGAGC---AGATGCCAA
s Allenopithecus_nigroviridis.k141_787855      23803 76 -     46693 AGGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Allenopithecus_nigroviridis.k141_787855  I 165 n 152
s Allochrocebus_lhoesti.k141_1513956            8347 76 +     44761 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Allochrocebus_lhoesti.k141_1513956       C 0 C 0
s Allochrocebus_preussi.k141_3466725            8364 76 +     53249 agggtgtaggaatcgt-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Allochrocebus_preussi.k141_3466725       C 0 C 0
s Allochrocebus_solatus.k141_465952             8652 73 +     26559 ---GTGTAGGAATCGT-G-----T----CTTTCTT-ACTAACTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Allochrocebus_solatus.k141_465952        n 60 n 60
s Cercocebus_atys.KQ010939.1                29210228 76 +  29793205 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercocebus_atys.KQ010939.1               I 103 I 88
s Cercocebus_chrysogaster.k141_129667          31056 76 -     34785 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTAtgg------cagagc---agatgctaa
i Cercocebus_chrysogaster.k141_129667      I 103 I 1
s Cercocebus_lunulatus.k141_1448852             7474 76 -     50786 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTaa
i Cercocebus_lunulatus.k141_1448852        I 119 I 88
s Cercocebus_torquatus.k141_301629              7559 76 -     11288 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATAG------CAGAGC---AGATGCTAA
i Cercocebus_torquatus.k141_301629         I 103 I 88
s Cercopithecus_ascanius.k141_395955            1045 76 +     10858 agggtgtaggaatcgt-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTCtg---atggtatgg------cagagc---agatgctaa
i Cercopithecus_ascanius.k141_395955       C 0 C 0
s Cercopithecus_cephus.k141_294495              2508 76 -      5583 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercopithecus_cephus.k141_294495         I 32 I 1
s Cercopithecus_diana.k141_2649081              7558 76 -     35932 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercopithecus_diana.k141_2649081         I 103 n 62
s Cercopithecus_hamlyni.k141_1438427            5351 76 -     46742 agggtgtaagaatcgt-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTCTg---atggtatgg------cagagc---agatgctaa
i Cercopithecus_hamlyni.k141_1438427       I 72 C 0
s Cercopithecus_lowei.k141_1304160              2771 76 -      4275 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercopithecus_lowei.k141_1304160         I 103 I 1
s Cercopithecus_albogularis.ctg5                  34210975 76 -  39242232 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercopithecus_albogularis.ctg5                 I 103 n 62
s Cercopithecus_mona.ctg42                  15303839 76 +  20621893 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercopithecus_mona.ctg42                 I 103 C 0
s Cercopithecus_neglectus.k141_2633140         10459 76 -     57664 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercopithecus_neglectus.k141_2633140     I 103 I 87
s Cercopithecus_nictitans.k141_131260           1566 76 +      8556 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercopithecus_nictitans.k141_131260      I 103 n 62
s Cercopithecus_petaurista.k141_1954245         1951 76 -     33246 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercopithecus_petaurista.k141_1954245    I 103 C 0
s Cercopithecus_pogonias.k141_2349534          12826 76 +     31427 AGGGTGTAGGAATCGT-G-----T----TTTTCTT-ACTAATTAGTAAGAATT-AC-TCATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercopithecus_pogonias.k141_2349534      I 103 n 61
s Cercopithecus_roloway.k141_2783013           28357 76 -     43083 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Cercopithecus_roloway.k141_2783013       C 0 I 88
s Chlorocebus_aethiops.ctg56                12889581 76 +  17892486 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Chlorocebus_aethiops.ctg56               C 0 C 0
s Chlorocebus_pygerythrus.k141_745568           8108 76 -     98243 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAAC---AGATGCTAA
i Chlorocebus_pygerythrus.k141_745568      I 103 n 61
s Chlorocebus_sabaeus.CM001947.1            33758492 76 - 135778131 agggtgtaggaatcgt-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATGCTAA
i Chlorocebus_sabaeus.CM001947.1           C 0 I 87
s Colobus_angolensis.KN983594.1               505282 61 +   1039924 AAGGCATAGGAATTAT-A-----T----CCTTTCT-ACTAATTAT-----------------CTG---ATGACACGC------TCGAAC---AGATGCTAA
i Colobus_angolensis.KN983594.1            I 4457 n 0
s Colobus_guereza.LG09                     103628984 61 - 145964134 AAGGTGTAGGAATTAT-A-----T----CCTttCT-ACTAATTAG-----------------CTG---ATGacatgc------tcgaac---agacgccaa
i Colobus_guereza.LG09                     N 0 I 1
s Colobus_polykomos.k141_2215831                1051 61 -     10747 aaggtgtaggaattaT-A-----t----cctttct-actaattag-----------------ctg---atgacatgc------tcgaac---agacgccaa
i Colobus_polykomos.k141_2215831           I 124 n 0
s Erythrocebus_patas.Contig40               15742392 76 +  21278523 AGGGTGTAGGAATCGT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAGAGC---AGATgctaa
i Erythrocebus_patas.Contig40              C 0 C 0
s Gorilla_beringei.k141_1529327                16819 59 +     19115 AAGGCATAGGAATTAT-G-----T----CTTTTTTTACTGATTGG-----------------C------TGACACGG------CCGAGC---AGATGCTAA
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg47                 6876607 76 -  17053299 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAAAGC---AGATGCTAA
i Lophocebus_aterrimus.ctg47               I 119 I 1
s Macaca_arctoides.k141_1510892                 8056 61 +     52312 aaggcgtaggaattat-a-----t----cctttct-actaattag-----------------ttg---atggcatgc------tcgaac---agacgccaa
i Macaca_arctoides.k141_1510892            n 148 I 1
s Macaca_assamensis.Contig5                 34322307 76 -  60120075 aaggtgtaggaatcat-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTCTg---aaggtatgg------cagagc---agatgctaa
i Macaca_assamensis.Contig5                I 103 C 0
s Macaca_cyclopis.k119_512377                   5840 76 +     21625 aaggtgtaggaatcat-g-----t----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---AAGGTATGG------CAGAGC---AGATGCTAA
i Macaca_cyclopis.k119_512377              I 103 C 0
s Macaca_fascicularis.k141_747886              24431 76 +     40098 aaggtgtaggaatcac-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTCtg---aaggtatgg------cagagc---agatgctaa
i Macaca_fascicularis.k141_747886          I 103 I 88
s Macaca_fuscata.k119_609323                   10274 76 -     25971 aaggtgtaggaatcat-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTctg---aaggtatgg------cagagc---agatgctaa
i Macaca_fuscata.k119_609323               I 103 n 60
s Macaca_leonina.k141_3706292                  14204 76 -     29935 aaggtgtaggaatcat-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTctg---aaggtatgg------cagagc---agatgctaa
i Macaca_leonina.k141_3706292              I 103 C 0
s Macaca_maura.k141_1914888                    10116 76 -     25759 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---AAGGTATGG------CAGAGC---AGATGCTAA
i Macaca_maura.k141_1914888                I 103 I 87
s Macaca_mulatta.NC_041758.1                34259604 76 - 187317192 aaggtgtaggaatcat-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTCTG---AAGGTATGG------CAGAGC---AGATGCTAA
i Macaca_mulatta.NC_041758.1               I 103 n 60
s Macaca_nemestrina.KQ005114.1               9180715 76 -   9503891 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---AAGGTATGG------CAGAGC---AGATGCTAA
i Macaca_nemestrina.KQ005114.1             I 103 C 0
s Macaca_nigra.k141_1991806                     5840 76 +     21490 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---AAGGTATGG------CAGAGC---AGATGCTAA
i Macaca_nigra.k141_1991806                I 103 n 90
s Macaca_radiata.k141_501718                    2600 76 +     18260 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---AAGGTATGG------CAGAGC---AGATGCTAA
i Macaca_radiata.k141_501718               I 103 C 0
s Macaca_siberu.k141_1350179                    7935 76 +     23600 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---AAGGTATGG------CAGAGC---AGATGCTAA
i Macaca_siberu.k141_1350179               I 103 n 177
s Macaca_silenus.Contig1                    14194690 76 +  84276269 aaggtgtaggaATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---AAGGTATGG------CAGAGC---AGATGCTAA
i Macaca_silenus.Contig1                   C 0 C 0
s Macaca_thibetana.k99_645926                   6975 76 +     22580 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---AAGGTATGG------CAGAGC---AGATGCTAA
i Macaca_thibetana.k99_645926              I 103 n 60
s Macaca_tonkeana.k141_2069709                 16768 76 +     32421 aaggtgtaggaatcat-g-----t----ctttctt-actaattAGTAAGAATT-AC-TAATTCTG---AAGGTATGG------CAGAGC---AGATGCTAA
i Macaca_tonkeana.k141_2069709             I 103 n 117
s Mandrillus_leucophaeus.scaffold284         9283622 76 -  27319382 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAAAGC---AGATGCTAA
i Mandrillus_leucophaeus.scaffold284       I 103 I 87
s Mandrillus_sphinx.Contig7                 14441196 76 +  51421834 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAAAGC---AGATGCTAA
i Mandrillus_sphinx.Contig7                C 0 C 0
s Miopithecus_ogouensis.k141_1060846           14173 61 +     17472 AAGGCGTGGGAATTAT-A-----T----CCTTTCT-ACTAATTAG-----------------TTG---ATGACATGC------TCGAAC---AGATGCCAA
i Miopithecus_ogouensis.k141_1060846       C 0 I 62
s Nasalis_larvatus.k141_772271                  7097 61 +     15527 AAGGCGTAGGAATTAT-A-----T----CCTTTCT-ACTAATTAG-----------------CTG---ATGACACGC------TTGAAC---AGATGCTAA
i Nasalis_larvatus.k141_772271             I 536 I 1
s Pan_paniscus.CM003390.1                   99458862 62 - 162613886 AAGGCATAggaattat-g-----t----ctttttttactGATTGG-----------------CTG---ATGACACGG------CCGAGC---AGATGCTAA
i Pan_paniscus.CM003390.1                  C 0 n 0
s Pan_troglodytes.CM009245.2                57354914 62 + 156046543 AAGGCATAggaattat-g-----t----ctttttttactGATTGG-----------------CTG---ATGACATGG------CCGAGC---AGATGCTAA
i Pan_troglodytes.CM009245.2               C 0 n 0
s Papio_anubis.CM001495.2                   34020608 76 - 183742232 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAAAGC---AGATGCTAA
i Papio_anubis.CM001495.2                  C 0 C 0
s Papio_cynocephalus.k141_1747982               2011 76 +     16929 aaggtgtaggaatcat-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTCTG---ATGGTAtgg------caaagc---agatgctaa
i Papio_cynocephalus.k141_1747982          I 103 I 88
s Papio_hamadryas.Contig36                  14843845 76 +  22161365 aaggtgtaggaatcat-g-----t----ctttctt-actaatTAGTAAGAATT-AC-TAATTCtg---atggtatgg------caaagc---agatgctaa
i Papio_hamadryas.Contig36                 C 0 C 0
s Papio_kindae.k141_2318205                    18043 76 -     48934 aaggtgtaggaatcat-g-----t----ctttCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAAAGC---AGATgctaa
i Papio_kindae.k141_2318205                I 103 I 1
s Papio_papio.k141_2436119                     35107 76 -     56783 aaggtgtaggaatcat-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTCtg---atggtatgg------caaagc---agatgctaa
i Papio_papio.k141_2436119                 C 0 C 0
s Papio_ursinus.k141_2685680                   12376 76 +     15956 aaggtgtaggaataat-g-----t----ctttctt-actaattagTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAAAGC---AGATGCTAA
i Papio_ursinus.k141_2685680               I 103 I 1
s Piliocolobus_badius.k141_1427614              2984 61 -      3240 aaggtgtaggaattat-a-----a----cctttct-actaattag-----------------ttg---atgacacgc------tcgaac---agaTGCCAA
i Piliocolobus_badius.k141_1427614         n 0 I 1
s Piliocolobus_gordonorum.k141_668257           3033 61 -     15642 aaggtgtaggaattat-a-----t----ccttcct-tcctatcag-----------------ctg---atgacatgc------ccaaac---agatgctaa
i Piliocolobus_gordonorum.k141_668257      I 533 I 78
s Piliocolobus_kirkii.k141_1218120              7601 61 +     20242 AAGGTGTAGGAATTAT-A-----T----CCTTCCT-TCCTATCAG-----------------CTG---ATGACATGC------CCAAAC---AGATGCTAA
i Piliocolobus_kirkii.k141_1218120         I 533 I 1
s Piliocolobus_tephrosceles.PDMG02000160.1   6872452 61 -   7768499 AAGATGTAGGAATTAT-A-----T----CCTTTCT-GCTAATTAG-----------------TTG---ATGACATGC------TCGAAC---AGACGCCAA
i Piliocolobus_tephrosceles.PDMG02000160.1 I 685 I 1
s Pongo_abelii.CM009283.2                     461875 61 +  34683425 AAGGTGTAGGAATTGT-G-----T----CTTTTCT-ACTAACTGG-----------------CTG---ATGACATGG------CTGAGC---AGATGCTAA
i Pongo_abelii.CM009283.2                  I 374 n 61
s Pongo_pygmaeus.ctg463                       334905 62 +    482523 GAGGCATAGGAATTAT-G-----T----CTtttttTACTGATTGG-----------------CTG---ATGACAGGG------CCGAGC---AGATGTTAA
i Pongo_pygmaeus.ctg463                    I 30 I 1
s Presbytis_comata.k141_1013241                18557 60 +     21385 AAGGTGTAGGAATTA--G-----t----ctttttt-ACTAATTGG-----------------CTG---ATGACAGag------ctgagc---agatgctaa
i Presbytis_comata.k141_1013241            I 30 C 0
s Presbytis_mitrata.k141_605190                26504 61 +     42743 AAGGTGTAGGAATTAT-A-----T----CCTTTCT-ACTAATCGG-----------------CTG---ATGACATTC------TCGAAC---AGACGCTAA
i Presbytis_mitrata.k141_605190            C 0 I 61
s Pygathrix_cinerea.k141_865802                14625 61 -     15891 aaggcgtaggaattat-a-----t----cctttct-actaattgg-----------------ctg---atgacacgc------ttgaac---agatgctaa
i Pygathrix_cinerea.k141_865802            I 667 I 1
s Pygathrix_nigripes_b.ctg3                    26941113 61 +  27159681 AAGGCGTaggaattat-A-----T----CCTTTCT-ACTAATTAG-----------------CTG---ATGACACGC------TTGAAC---AGATGCTAA
i Pygathrix_nigripes_b.ctg3                   n 0 I 1
s Pygathrix_nigripes_a.k141_1151401              16693 61 -     17243 aaggcgtaggaattat-a-----t----cctttct-actaattgg-----------------ctg---atgacacgc------ttgaac---agatgctaa
i Pygathrix_nigripes_a.k141_1151401          N 0 I 1
s Rhinopithecus_bieti.k119_390069               1602 61 +      6100 aaggcgtaggaattat-a-----t----cctttct-actaattag-----------------ctg---atgacacgc------ttgaac---agatgctaa
i Rhinopithecus_bieti.k119_390069          I 666 I 1
s Rhinopithecus_roxellana.NC_044567.1       10905127 61 +  83045532 AAGGCATAGGAATTAT-A-----T----CCTTTCT-ACTAATTAG-----------------CTG---ATGGCACGC------TCGAAC---AGATGACAA
i Rhinopithecus_roxellana.NC_044567.1      N 0 N 0
s Rhinopithecus_strykeri.ctg213              1461708 61 +   1691473 aaggcgtaggaattat-a-----t----cctttct-actaattag-----------------ctg---atgacacgc------ttgaac---agatgctaa
i Rhinopithecus_strykeri.ctg213            n 0 I 1
s Semnopithecus_hypoleucos.k141_2248933        46927 61 +    111052 aagttgtaggaattat-a-----t----cctttct-gctaattag-----------------ttg---gtggcacgc------tcgaac---agacgccaa
i Semnopithecus_hypoleucos.k141_2248933    N 0 I 1
s Semnopithecus_johnii.k141_1602740             4262 61 +     77299 AAGTTGTAGGAATTAT-A-----T----CCTTTCT-GCTAATTAG-----------------TTG---GTGGCACGC------TCGAAC---AGATGCCAA
i Semnopithecus_johnii.k141_1602740        N 0 I 1
s Semnopithecus_priam.k141_363457                  0  5 -      2169 ------------------------------------------------------------------------------------------------Gccaa
i Semnopithecus_priam.k141_363457          N 0 I 1
s Semnopithecus_schistaceus.k141_929466        46219 61 -     62879 AAGTTGTAGGAATTAT-A-----T----CCTTTCT-GCTAATTAG-----------------TTG---GTGGCACGC------TCAAAC---AGACGCCAA
i Semnopithecus_schistaceus.k141_929466    N 0 I 1
s Semnopithecus_vetulus.k141_490351             5090 61 -     39714 AAGTTGTAGGAATTAT-A-----T----CCTTTCT-GCTAATTAG-----------------TTG---GTGGCACGC------TCGAAC---AGACGCCAA
i Semnopithecus_vetulus.k141_490351        N 0 I 1
s Theropithecus_gelada.CM009954.1           34438060 76 - 186847797 AAGGTGTAGGAATCAT-G-----T----CTTTCTT-ACTAATTAGTAAGAATT-AC-TAATTCTG---ATGGTATGG------CAAAGC---AGATGCTAA
i Theropithecus_gelada.CM009954.1          I 103 n 60
s Trachypithecus_auratus.k141_134546            9802 61 +     42513 aaggcataagaattat-a-----t----cctttct-actaattag-----------------ctg---atgacacgc------tcgaac---agatgctaa
i Trachypithecus_auratus.k141_134546       N 0 I 1
s Trachypithecus_crepusculus.k141_460762       10684 61 -     15745 AAGGCGTAAGAATTAT-A-----T----CCTTTCT-ACTAATTAG-----------------CTG---ATGACACGC------TCGAAC---AGATGCTAA
i Trachypithecus_crepusculus.k141_460762   N 0 I 1
s Trachypithecus_cristatus.k141_249100          6888 61 +     39750 aaggcataagaattat-a-----t----cctttct-actaattag-----------------ctg---atgacacgc------tcgaac---agatgctaa
i Trachypithecus_cristatus.k141_249100     N 0 I 1
s Trachypithecus_francoisi.k141_635324          9113 61 +     16532 AGGGTGTTGGAATTAT-A-----T----CCTTCCT-ACTAATTGG-----------------CTG---ATGACATGC------CCGAAC---AGACGCCAA
i Trachypithecus_francoisi.k141_635324     N 0 N 0
s Trachypithecus_geei.k141_975773              17405 61 +     48972 aagGCGTAGGAATTAT-A-----T----CCTTTCT-ACTAATTAG-----------------CTG---ATGACACGC------TCGAAC---AGATGCTAA
i Trachypithecus_geei.k141_975773          N 0 I 1
s Trachypithecus_germaini.k141_962971           9921 61 -     41733 AAGGCGTAAGAATTAT-A-----T----CCTTTCT-ACTAATTAG-----------------CTG---ATGACACGC------TCGAAC---AGATGCTAA
i Trachypithecus_germaini.k141_962971      N 0 I 1
s Trachypithecus_hatinhensis.k141_631947        3318 61 +     11632 aagatgtgggaattat-a-----t----cctttct-actgattag-----------------ctg---atgacacgc------tcaaac---agatgccaa
i Trachypithecus_hatinhensis.k141_631947   N 0 I 1
s Trachypithecus_laotum.k141_134816              716 61 -     39562 aaggcataggagttat-a-----t----cctttct-actaattag-----------------ctg---atgacacgc------tcgaac---agacgccaa
i Trachypithecus_laotum.k141_134816        N 0 N 0
s Trachypithecus_leucocephalus.k141_307502      6069 61 -     13282 AAGATgtgggaattat-a-----t----cctttct-actgattag-----------------ctg---atgacacgc------tcaaac---agatgccaa
i Trachypithecus_leucocephalus.k141_307502 N 0 I 1
s Trachypithecus_melamera.k141_163466           9867 61 +     13009 aaggcgtaagaattat-a-----t----cctttct-actaattag-----------------ctg---atgacacgc------tcgaac---agatgctaa
i Trachypithecus_melamera.k141_163466      n 0 I 1
s Trachypithecus_obscurus.k141_359499           8893 61 -     22785 AAGGCGTAAGAATTAT-A-----T----CCTTTCT-ACTAATTAG-----------------CTG---ATGACACGC------TCGAAC---AGATGCTAA
i Trachypithecus_obscurus.k141_359499      N 0 I 1
s Trachypithecus_phayrei.ctg17              64155559 61 +  64442595 AAGGCGTAAGAATTAT-A-----T----CCTTTCT-ACTAATTAG-----------------CTG---ATGACACGC------TCGAAC---AGATGCTAA
i Trachypithecus_phayrei.ctg17             N 0 I 1
s Trachypithecus_pileatus.k141_682999           1503 61 -     32980 aaggcgtaggaattat-a-----t----cctttct-actaattag-----------------ctg---atgacacgc------tcgaac---agatgctaa
i Trachypithecus_pileatus.k141_682999      N 0 I 1

a score=0.000000
s hg38.chrM                                    12830 1 +     16569 C
s Allenopithecus_nigroviridis.k141_3930415      8674 1 -     11164 t
i Allenopithecus_nigroviridis.k141_3930415 I 90 I 60
s Allochrocebus_lhoesti.k141_1513956            8423 1 +     44761 T
i Allochrocebus_lhoesti.k141_1513956       C 0 I 60
s Allochrocebus_preussi.k141_3466725            8440 1 +     53249 T
i Allochrocebus_preussi.k141_3466725       C 0 I 60
s Allochrocebus_solatus.k141_1287866            4742 1 +     13631 T
i Allochrocebus_solatus.k141_1287866       I 60 I 60
s Cercocebus_atys.KQ010367.1                11408490 1 -  11668111 T
i Cercocebus_atys.KQ010367.1               I 60 I 58
s Cercocebus_chrysogaster.k141_1945715         89500 1 -    105757 T
i Cercocebus_chrysogaster.k141_1945715     I 60 I 58
s Cercocebus_lunulatus.k141_2748568             1549 1 -      4674 t
i Cercocebus_lunulatus.k141_2748568        I 163 I 60
s Cercocebus_torquatus.k141_2422586              923 1 +      2016 T
i Cercocebus_torquatus.k141_2422586        I 684 I 60
s Cercopithecus_ascanius.k141_395955            1121 1 +     10858 t
i Cercopithecus_ascanius.k141_395955       C 0 I 60
s Cercopithecus_cephus.k141_2404415            10920 1 +     17637 T
i Cercopithecus_cephus.k141_2404415        I 61 n 1
s Cercopithecus_diana.k141_1147129             15378 1 +     57904 T
i Cercopithecus_diana.k141_1147129         I 137 I 60
s Cercopithecus_hamlyni.k141_1438427            5427 1 -     46742 t
i Cercopithecus_hamlyni.k141_1438427       C 0 I 60
s Cercopithecus_lowei.k141_3362039              1019 1 -      3644 T
i Cercopithecus_lowei.k141_3362039         I 61 I 60
s Cercopithecus_albogularis.ctg28                 11340841 1 +  15093345 T
i Cercopithecus_albogularis.ctg28                I 137 n 62
s Cercopithecus_mona.ctg42                  15303915 1 +  20621893 T
i Cercopithecus_mona.ctg42                 C 0 I 60
s Cercopithecus_neglectus.k141_2030378         10269 1 -     11116 T
i Cercopithecus_neglectus.k141_2030378     I 137 I 60
s Cercopithecus_nictitans.k141_4976              190 1 +      1179 t
i Cercopithecus_nictitans.k141_4976        n 62 I 90
s Cercopithecus_petaurista.k141_1954245         2027 1 -     33246 T
i Cercopithecus_petaurista.k141_1954245    C 0 I 60
s Cercopithecus_pogonias.k141_1128599            431 1 +      1109 t
i Cercopithecus_pogonias.k141_1128599      I 61 I 60
s Cercopithecus_roloway.k141_2547499           13538 1 +     32417 t
i Cercopithecus_roloway.k141_2547499       I 468 I 60
s Chlorocebus_aethiops.ctg56                12889657 1 +  17892486 T
i Chlorocebus_aethiops.ctg56               C 0 I 60
s Chlorocebus_pygerythrus.k141_1337201         12286 1 -     14715 T
i Chlorocebus_pygerythrus.k141_1337201     I 61 I 60
s Chlorocebus_sabaeus.CM001941.2            72798781 1 + 126035930 t
i Chlorocebus_sabaeus.CM001941.2           I 137 I 60
s Colobus_angolensis.KN983729.1             10741309 1 +  35326507 T
i Colobus_angolensis.KN983729.1            n 0 I 61
s Colobus_guereza.LG01                      13229258 1 - 200372422 t
i Colobus_guereza.LG01                     n 1 I 61
s Colobus_polykomos.k141_1815305               13428 1 +     49352 T
i Colobus_polykomos.k141_1815305           n 0 I 61
s Erythrocebus_patas.Contig40               15742468 1 +  21278523 t
i Erythrocebus_patas.Contig40              C 0 I 60
s Gorilla_beringei.k141_1529327                16878 1 +     19115 T
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg101                4014299 1 +   8526212 t
i Lophocebus_aterrimus.ctg101              I 133 I 60
s Macaca_arctoides.k141_416589                  2385 1 -     26632 t
i Macaca_arctoides.k141_416589             I 137 I 60
s Macaca_assamensis.Contig5                 34322383 1 -  60120075 t
i Macaca_assamensis.Contig5                C 0 I 60
s Macaca_cyclopis.k119_512377                   5916 1 +     21625 T
i Macaca_cyclopis.k119_512377              C 0 I 60
s Macaca_fascicularis.k141_1173983             18911 1 -     25728 T
i Macaca_fascicularis.k141_1173983         I 90 I 60
s Macaca_fuscata.k119_959180                    5618 1 +     11606 T
i Macaca_fuscata.k119_959180               I 60 I 58
s Macaca_leonina.k141_3706292                  14280 1 -     29935 t
i Macaca_leonina.k141_3706292              C 0 I 60
s Macaca_maura.k141_1765751                    10467 1 -     48667 t
i Macaca_maura.k141_1765751                I 91 I 60
s Macaca_mulatta.NC_041756.1                54488576 1 + 185288947 T
i Macaca_mulatta.NC_041756.1               I 60 I 58
s Macaca_nemestrina.KQ005114.1               9180791 1 -   9503891 T
i Macaca_nemestrina.KQ005114.1             C 0 I 60
s Macaca_nigra.k141_563100                      8950 1 +     15148 t
i Macaca_nigra.k141_563100                 I 90 I 60
s Macaca_radiata.k141_501718                    2676 1 +     18260 T
i Macaca_radiata.k141_501718               C 0 I 60
s Macaca_siberu.k141_204286                    11410 1 +     30583 T
i Macaca_siberu.k141_204286                I 133 I 60
s Macaca_silenus.Contig1                    14194766 1 +  84276269 T
i Macaca_silenus.Contig1                   C 0 I 60
s Macaca_thibetana.k99_179800                   4540 1 +     12326 T
i Macaca_thibetana.k99_179800              I 60 I 58
s Macaca_tonkeana.k141_1979834                  2434 1 +     26550 T
i Macaca_tonkeana.k141_1979834             I 91 n 117
s Mandrillus_leucophaeus.scaffold228        12686381 1 -  20774610 T
i Mandrillus_leucophaeus.scaffold228       I 133 I 60
s Mandrillus_sphinx.Contig7                 14441272 1 +  51421834 T
i Mandrillus_sphinx.Contig7                C 0 I 60
s Miopithecus_ogouensis.k141_69083             11674 1 -     35729 T
i Miopithecus_ogouensis.k141_69083         I 91 I 60
s Nasalis_larvatus.k141_328248                 11004 1 +     15287 t
i Nasalis_larvatus.k141_328248             n 1 I 61
s Pan_paniscus.CM003385.1                  131191739 1 + 247869975 T
i Pan_paniscus.CM003385.1                  I 90 I 60
s Pan_troglodytes.CM009240.2               110737335 1 - 128755405 t
i Pan_troglodytes.CM009240.2               I 90 I 60
s Papio_anubis.CM001495.2                   34020684 1 - 183742232 T
i Papio_anubis.CM001495.2                  C 0 I 56
s Papio_cynocephalus.k141_1178521               1998 1 -      3223 T
i Papio_cynocephalus.k141_1178521          n 88 I 60
s Papio_hamadryas.Contig36                  14843921 1 +  22161365 t
i Papio_hamadryas.Contig36                 C 0 I 60
s Papio_kindae.k141_5429907                     2574 1 -     26587 t
i Papio_kindae.k141_5429907                I 133 I 60
s Papio_papio.k141_2436119                     35183 1 -     56783 t
i Papio_papio.k141_2436119                 C 0 I 60
s Papio_ursinus.k141_4118998                    5317 1 +      5483 T
i Papio_ursinus.k141_4118998               n 1 I 60
s Piliocolobus_badius.k141_1251787              1593 1 +     13825 t
i Piliocolobus_badius.k141_1251787         n 1 n 1
s Piliocolobus_gordonorum.k141_172991           4029 1 -     10919 t
i Piliocolobus_gordonorum.k141_172991      n 78 T 1008
s Piliocolobus_kirkii.k141_176343               4296 1 +     45481 t
i Piliocolobus_kirkii.k141_176343          n 1 T 1008
s Piliocolobus_tephrosceles.PDMG02001777.1    422273 1 +   1648731 T
i Piliocolobus_tephrosceles.PDMG02001777.1 n 1 n 1
s Pongo_abelii.CM009264.2                     449276 1 + 129937803 T
i Pongo_abelii.CM009264.2                  I 61 I 61
s Pongo_pygmaeus.ctg463                       317955 1 -    482523 T
i Pongo_pygmaeus.ctg463                    I 61 I 77
s Presbytis_comata.k141_1013241                18617 1 +     21385 t
i Presbytis_comata.k141_1013241            C 0 I 60
s Presbytis_mitrata.k141_2005050               12811 1 +     23059 T
i Presbytis_mitrata.k141_2005050           I 90 n 61
s Pygathrix_cinerea.k141_145450                 4062 1 +      7128 t
i Pygathrix_cinerea.k141_145450            n 1 I 61
s Pygathrix_nigripes_b.ctg443                    245589 1 -    297984 t
i Pygathrix_nigripes_b.ctg443                 n 1 I 61
s Pygathrix_nigripes_a.k141_320050               10884 1 +     22551 t
i Pygathrix_nigripes_a.k141_320050           n 1 I 61
s Rhinopithecus_bieti.k119_96236                6781 1 +     11866 t
i Rhinopithecus_bieti.k119_96236           n 1 I 61
s Rhinopithecus_roxellana.NC_044554.1       37414922 1 + 156498330 t
i Rhinopithecus_roxellana.NC_044554.1      N 0 I 61
s Rhinopithecus_strykeri.ctg264              1311853 1 -   1425303 t
i Rhinopithecus_strykeri.ctg264            n 1 I 61
s Theropithecus_gelada.CM009952.1          182322866 1 - 183260707 T
i Theropithecus_gelada.CM009952.1          I 60 I 58
e Trachypithecus_pileatus.k141_682999           1564 1 -     32980 I
e Trachypithecus_phayrei.ctg17              64155620 1 +  64442595 I
e Trachypithecus_obscurus.k141_359499           8954 1 -     22785 I
e Trachypithecus_melamera.k141_163466           9928 1 +     13009 I
e Trachypithecus_leucocephalus.k141_307502      6130 1 -     13282 I
e Trachypithecus_hatinhensis.k141_631947        3379 1 +     11632 I
e Trachypithecus_germaini.k141_962971           9982 1 -     41733 I
e Trachypithecus_geei.k141_975773              17466 1 +     48972 I
e Trachypithecus_cristatus.k141_249100          6949 1 +     39750 I
e Trachypithecus_crepusculus.k141_460762       10745 1 -     15745 I
e Trachypithecus_auratus.k141_134546            9863 1 +     42513 I
e Semnopithecus_vetulus.k141_490351             5151 1 -     39714 I
e Semnopithecus_schistaceus.k141_929466        46280 1 -     62879 I
e Semnopithecus_priam.k141_363457                  5 1 -      2169 I
e Semnopithecus_johnii.k141_1602740             4323 1 +     77299 I
e Semnopithecus_hypoleucos.k141_2248933        46988 1 +    111052 I

a score=0.000000
s hg38.chrM                                    12831 60 +     16569 ACAGCAGCCATTCAAG--CAATCCTA----TACAA-CCGTATCGG-CGATA-TCGGTTTC--ATCCTCG-CC
s Allenopithecus_nigroviridis.k141_4289073     43735 60 +    127561 acagcagccatccaag--caatcctg----tacaa-ccgtattgg-cgaca-ttggcctc--attctag-ct
i Allenopithecus_nigroviridis.k141_4289073 I 17270 T 16529
s Allochrocebus_lhoesti.k141_1288440            2858 60 -     10247 acagcagccatccaaa--caatccta----tacaa-ccgCattgg-cgaca-ttggcTTT--ATCCTAA-CC
i Allochrocebus_lhoesti.k141_1288440       I 639 I 1
s Allochrocebus_preussi.k141_1036589            7349 60 -     14749 ACAGcagccatcccaa--caatccta----tacaa-ccgcattgg-cgaca-ttggcttt--ATCCTAA-CC
i Allochrocebus_preussi.k141_1036589       I 702 I 1
s Allochrocebus_solatus.k141_1664502            7108 60 +     14510 ACAGCAGCCATCCAAA--CAATCCTA----TACAA-CCGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Allochrocebus_solatus.k141_1664502       I 610 I 1
s Cercocebus_atys.KQ011505.1                 2105716 60 +   2368337 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CCGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Cercocebus_atys.KQ011505.1               I 92 I 1
s Cercocebus_chrysogaster.k141_129667          31133 60 -     34785 acagcagccctccaag--cagtcctg----tacaa-cctcatcgg-tgata-ttggcttt--attttag-ct
i Cercocebus_chrysogaster.k141_129667      I 1 I 27
s Cercocebus_lunulatus.k141_4324092             1377 60 +      2664 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CCGCATTGG-CGACA-TTggcttt--atcctaa-cc
i Cercocebus_lunulatus.k141_4324092        I 92 I 1
s Cercocebus_torquatus.k141_72584               3386 60 +     30577 acagcagccacccaag--caatccta----tacaa-ccgcattgg-cgaca-ttggcttt--atcctaa-cc
i Cercocebus_torquatus.k141_72584          I 92 I 1
s Cercopithecus_ascanius.k141_4105459            869 60 -      9485 actgcgaccatccaag--caatctta----tataa-CCACATTGG-CTATA-TTGGCATC--ATCCTAA-CC
i Cercopithecus_ascanius.k141_4105459      I 616 I 1
s Cercopithecus_cephus.k141_294495              2585 60 -      5583 ACAGCAGCCCTCCAAG--CAGTCCTG----TGCAA-CCTCATTGG-TGATA-TTGGCTTT--ATTTTAG-CT
i Cercopithecus_cephus.k141_294495         I 1 C 0
s Cercopithecus_diana.k141_2154515              3230 60 -      9500 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CCGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Cercopithecus_diana.k141_2154515         I 62 I 1
s Cercopithecus_hamlyni.k141_670643              770 60 -      2013 ACAGCAGCCATCCAAG--CAATTCTA----TATAA-CCGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Cercopithecus_hamlyni.k141_670643        I 92 I 1
s Cercopithecus_lowei.k141_1304160              2848 60 -      4275 ACAGCAGCCCTCCAAG--CAGTCCTG----TGCAA-CCTCATTGG-TGATA-TTGGCTTT--ATTTTAG-CT
i Cercopithecus_lowei.k141_1304160         I 1 n 60
s Cercopithecus_albogularis.ctg213                 2144502 60 +   2308918 ACAGCAGCcaCCCAAG--CAATCCTA----TACAA-CCGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Cercopithecus_albogularis.ctg213               I 62 I 1
s Cercopithecus_mona.ctg49                  18627551 60 +  18760735 acagcagcaaccCAAG--CAATTCTA----TACAA-CCGCATTGG-CGATA-TTGGTCTT--Atcctag-cc
i Cercopithecus_mona.ctg49                 I 615 I 1
s Cercopithecus_neglectus.k141_1316281          3897 60 +      4583 ACAGCAGCCACCCAag--caatccta----tacaa-ccgcattgg-cgaca-ttggcttt--atCCTAA-CC
i Cercopithecus_neglectus.k141_1316281     I 62 I 1
s Cercopithecus_nictitans.k141_701113           7380 60 -     10034 acagcagccacccaag--caATCCTA----TACAA-CCGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Cercopithecus_nictitans.k141_701113      I 62 I 1
s Cercopithecus_petaurista.k141_1267320         8143 60 +     62060 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CTGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Cercopithecus_petaurista.k141_1267320    I 62 I 1
s Cercopithecus_pogonias.k141_3289668            748 60 +      1681 acagcagccacccaag--caatccta----tacaa-ccgcattgg-cgaca-ttggcttt--atcctaa-cc
i Cercopithecus_pogonias.k141_3289668      n 60 I 30
s Cercopithecus_roloway.k141_2488818            8225 60 +     14624 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CCGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Cercopithecus_roloway.k141_2488818       n 60 n 60
s Chlorocebus_aethiops.ctg532                 225707 60 -    463733 ACAGCAGCCATCCAAA--CAATCCTA----TACAA-CCGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Chlorocebus_aethiops.ctg532              I 702 I 1
s Chlorocebus_pygerythrus.k141_2661883          7445 60 +     35588 ACAGCAGCCATCCAAG--CAGTCCTA----TACAA-TCGCATTGG-CGATA-TTGGCTTC--ATCCTAG-CT
i Chlorocebus_pygerythrus.k141_2661883     n 60 n 60
s Chlorocebus_sabaeus.CM001949.2            87035074 60 - 125710982 acagcagccacccaag--caatccta----tacaa-ccgcattgg-cgaca-ttggcttt--aTCCTAA-CC
i Chlorocebus_sabaeus.CM001949.2           I 639 n 60
s Colobus_angolensis.KN980972.1              2051617 60 +   4172716 ACAGCAGCCATTCAAG--CAATCTTG----TATAA-CTGCATTGG-TGATA-TCGGCTTT--ATCCTAG-CC
i Colobus_angolensis.KN980972.1            I 740 I 1
s Colobus_guereza.LG09                     103629046 60 - 145964134 acagcagccATTCAag--caatcttg----tataa-ccgcattgg-tgata-tcggcttt--attctag-cc
i Colobus_guereza.LG09                     I 1 I 1
s Colobus_polykomos.k141_36816                  1158 60 -     12041 acagcagccattcaag--caatcttg----tataa-ctgcattgg-tgata-tcggcttt--atcctag-cc
i Colobus_polykomos.k141_36816             I 740 n 61
s Erythrocebus_patas.Contig90                1696513 60 +   9667331 ACAGCAGCCATCCAAG--CAATCCTA----TATAA-CCGCATCGG-CGATA-TTGGCCTC--ATCCTAG-CC
i Erythrocebus_patas.Contig90              n 60 n 60
s Gorilla_beringei.k141_1529327                16879 60 +     19115 ACAGCAGCCCTCCAAG--CAATTCTA----TATAA-CCACATTGG-CAATA-TTGGCTTC--ATTTTAG-CT
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg47                 6876684 60 -  17053299 ACAGCAGCCCTCCAAG--CAGTCCTG----TACAA-CCTCATCGG-TAATA-TTGGCTTT--ATTTTAG-CT
i Lophocebus_aterrimus.ctg47               I 1 I 14
s Macaca_arctoides.k141_1510892                 8118 60 +     52312 acagcagccacccaag--caatccta----tacaa-ctgcattgg-cgaca-ttggcttt--atcctaa-cc
i Macaca_arctoides.k141_1510892            I 1 I 1
s Macaca_assamensis.Contig25                27971765 60 +  32714874 acagcagccatccaag--caatccta----tataa-ccgCattgg-cgaca-tcggcctt--atcctgg-cc
i Macaca_assamensis.Contig25               n 60 I 1
s Macaca_cyclopis.k119_817217                   7813 60 -      8849 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CTGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Macaca_cyclopis.k119_817217              n 60 n 60
s Macaca_fascicularis.k141_1070647              8523 60 -     52462 acagcagccacccaag--caatctta----tacaa-ctgcattgg-cgaca-ttggcttt--atcctaa-cc
i Macaca_fascicularis.k141_1070647         n 60 n 60
s Macaca_fuscata.k119_351549                    7145 60 +      9078 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CTGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Macaca_fuscata.k119_351549               n 58 n 58
s Macaca_leonina.k141_1704274                   2906 60 +     47902 ACAGcagccacccaag--caatccta----tacaa-ctgcattgg-cgaca-ttggcttt--atcctaa-cc
i Macaca_leonina.k141_1704274              n 60 I 1
s Macaca_maura.k141_937566                      2945 60 +     48221 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CTGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Macaca_maura.k141_937566                 n 60 I 1
s Macaca_mulatta.NC_041762.1                90395247 60 - 134124166 acagcagccacccaag--caatccta----tacaa-ctgcattgg-cgaca-ttggcttt--atcctaa-cc
i Macaca_mulatta.NC_041762.1               n 58 n 58
s Macaca_nemestrina.KQ004951.1               2234447 60 +   6857701 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CTGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Macaca_nemestrina.KQ004951.1             I 92 I 1
s Macaca_nigra.k141_1728683                    20254 60 +    134473 acagcagccacccaag--caatccta----tacaa-ctgcattgg-cgaca-ttggcttt--atcctaa-cc
i Macaca_nigra.k141_1728683                n 60 I 1
s Macaca_radiata.k141_2715046                   7986 60 -     52465 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CTGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Macaca_radiata.k141_2715046              n 60 I 1
s Macaca_siberu.k141_201044                     7912 60 -     51894 acagcagccaccCAAG--CAATCCTA----TACAA-CTGGATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Macaca_siberu.k141_201044                n 60 I 1
s Macaca_silenus.Contig160                   2097442 60 +   2276234 acagcagccacccaag--caatccta----tacaa-ctgcattgg-cgaca-ttggcttt--atcctaa-cc
i Macaca_silenus.Contig160                 n 60 I 1
s Macaca_thibetana.k99_67188                    5858 60 -     11359 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CTGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Macaca_thibetana.k99_67188               n 58 I 1
s Macaca_tonkeana.k141_2378819                  6752 60 -     13010 acagcagccctccaag--cgattctg----cataa-ccgcattgg-cgata-ttggcttc--attttag-ct
i Macaca_tonkeana.k141_2378819             n 117 I 1
s Mandrillus_leucophaeus.scaffold997            3898 60 -     22164 acagcagccacccaag--caatccta----tacaa-ccgcattgg-cgaca-ttggcttt--atcctaa-cc
i Mandrillus_leucophaeus.scaffold997       n 60 I 1
s Mandrillus_sphinx.Contig188                2157948 60 +   2279980 acagcagccatccaag--caatccta----tacaa-ccgcattgg-cgaca-ttggcttt--atcctaa-cc
i Mandrillus_sphinx.Contig188              n 60 I 1
s Miopithecus_ogouensis.k141_2507773            7676 60 -     12099 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CCGCATTGG-TGACA-TTGGCTTT--ATCCTAA-CC
i Miopithecus_ogouensis.k141_2507773       n 60 n 60
s Nasalis_larvatus.k141_772271                  7159 60 +     15527 ACAGCAGCTATCCAAG--CAATCCTG----TATAA-CCGCATTGG-CAATA-TTGGCTTT--ATCCTGG-CC
i Nasalis_larvatus.k141_772271             I 1 I 1
s Pan_paniscus.KT153251.1                      12276 60 +     16605 ACAGCAGCCATCCAAG--CAATCCTA----TATAA-CCGCATCGG-TGACA-TTGGTTTT--ATCCTAG-CC
i Pan_paniscus.KT153251.1                  I 699 I 17
s Pan_troglodytes.CM009251.2                68976752 60 +  95599650 ACAGCGGCCATCCAAG--CAATCCTA----TATAA-CCGTATCGG-TGATA-TTGGTTTT--GTCCTAG-CC
i Pan_troglodytes.CM009251.2               I 3983 I 1
s Papio_anubis.CM001504.2                   71917783 60 + 124513186 ACAGCAGCCCTCCAAG--CAGTTCTG----TACAA-CTGCATTGG-CGACA-CTGACTTT--ATTTTAG-CT
i Papio_anubis.CM001504.2                  I 209 n 56
s Papio_cynocephalus.k141_2026657              10538 60 +     45296 acagcagccctccaag--cagttctg----tacaa-ctgcattgg-cgaca-ctgacttt--attttag-ct
i Papio_cynocephalus.k141_2026657          I 134 n 60
s Papio_hamadryas.Contig48                  11402480 60 +  17843046 acagcagccctcCAAG--CAGTTCTG----TACAA-CTGCATTGG-CGACA-CTGACTTT--ATTTTAG-CT
i Papio_hamadryas.Contig48                 I 134 n 60
s Papio_kindae.k141_2318205                    18120 60 -     48934 acagcagccctccaag--cagtcctg----tacaa-cctc-atcggtgata-ttggcttt--attttag-ct
i Papio_kindae.k141_2318205                I 1 I 27
s Papio_papio.k141_1575386                      9848 60 +     19082 acagcagccctccaag--cagttctg----tacaa-ctgcattgg-cgaca-ctgacttt--attttag-ct
i Papio_papio.k141_1575386                 I 134 n 60
s Papio_ursinus.k141_2685680                   12453 60 +     15956 ACAGCAGCcctccaag--cagtcctg----tacaa-CCTC-ATCGGTGATA-TTGGCTTT--ATTTTAG-CT
i Papio_ursinus.k141_2685680               I 1 I 14
s Piliocolobus_badius.k141_1427614              3046 60 -      3240 ACAGCAGCCATTCAAG--CAATCTTG----TATAA-CCGCATTGG-TGATA-TTGGCTTt--atcctAG-CC
i Piliocolobus_badius.k141_1427614         I 1 I 30
s Piliocolobus_gordonorum.k141_1072001         11828 60 -     49362 ACAGCAGCCGCCCAAG--CAATCCTA----TACAA-CTGCATTGG-CGACA-TCGGCTTT--ATCCTAA-CC
i Piliocolobus_gordonorum.k141_1072001     n 1008 I 30
s Piliocolobus_kirkii.k141_1218120              7663 60 +     20242 ACTGCAGCCATCCAGG--CAATATTA----TATAA-CCACATCAG-CGATA-TTGGCATC--ATCCTAA-CC
i Piliocolobus_kirkii.k141_1218120         I 1 I 17
s Piliocolobus_tephrosceles.PDMG02000160.1   6872514 60 -   7768499 ACAGCAGCCATTCAAG--CAATCTTG----TATAA-CTGCATTGG-TGATG-TCGGCTTT--ATCCTAG-CC
i Piliocolobus_tephrosceles.PDMG02000160.1 I 1 I 1
s Pongo_abelii.CM009269.2                  128598934 60 - 145408105 ACAGCAGCCCTCCAAG--CGATTCTA----TATAA-CCGCATTGG-CGATA-TTGGCTTC--ATTTTAG-CT
i Pongo_abelii.CM009269.2                  I 93 C 0
s Pongo_pygmaeus.ctg463                       334968 60 +    482523 ACAGCAGCCCTCCAAG--CGATTCTA----TATAA-CCGCATTGG-CGATA-TTGGCTTC--ATTTTAG-CT
i Pongo_pygmaeus.ctg463                    I 1 C 0
s Presbytis_comata.k141_1478785                 1294 60 -      3993 acagcagcTATCCAAG--CAATCCTG----TATAA-TCGTATTGG-CGATA-TTGGTTTT--ATCCTAG-CT
i Presbytis_comata.k141_1478785            I 664 I 1
s Presbytis_mitrata.k141_7584                  30090 60 -     63203 ACAGCAGCCACCCAAG--caatccta----tacaa-ccgcattgg-cgaca-ttggcttt--atcctaa-cc
i Presbytis_mitrata.k141_7584              n 61 n 61
s Pygathrix_cinerea.k141_865802                14687 60 -     15891 acagcagctatccaag--caatcctg----tataa-ccgcattgg-caata-ttggcttt--atcctgg-cc
i Pygathrix_cinerea.k141_865802            I 1 I 1
s Pygathrix_nigripes_b.ctg3                    26941175 60 +  27159681 ACAGCAGCTATCCAAG--CAATCCTG----TATAA-CCGCATTGG-CAATA-TTGGCTTT--ATCCTGG-CC
i Pygathrix_nigripes_b.ctg3                   I 1 n 61
s Pygathrix_nigripes_a.k141_1151401              16755 60 -     17243 acagcagctatccaag--caatcctg----tataa-ccgcattgg-caata-ttggcttt--atcctgg-cc
i Pygathrix_nigripes_a.k141_1151401          I 1 n 61
s Rhinopithecus_bieti.k119_390069               1664 60 +      6100 acagcagctatccaag--caatcctg----tataa-ccgcattgg-caata-ttggcttt--atcctgg-cc
i Rhinopithecus_bieti.k119_390069          I 1 I 1
s Rhinopithecus_roxellana.NC_044549.1       95157487 60 + 206558726 ACAGCAGCTATCCAAG--CAATCCTG----TATAA-CCGCATTGG-CAATA-TTGGCTTT--ATCCTGG-CC
i Rhinopithecus_roxellana.NC_044549.1      n 61 n 61
s Rhinopithecus_strykeri.ctg213              1461770 60 +   1691473 acagcagctatccaag--caatcctg----tataa-ccgcattgg-caata-ttggcttt--atcctgg-cc
i Rhinopithecus_strykeri.ctg213            I 1 n 61
s Semnopithecus_hypoleucos.k141_2248933        46989 60 +    111052 acagcagctattcaag--caatcttg----tataa-ccgcattgg-tgata-tcggcttt--atcctag-cc
i Semnopithecus_hypoleucos.k141_2248933    I 1 I 1
s Semnopithecus_johnii.k141_1602740             4324 60 +     77299 ACAGCAGCTATTCAAG--CAATCTTG----TATAA-CCGCATTGG-TGATA-TCGGCTTT--ATCCTAG-CC
i Semnopithecus_johnii.k141_1602740        I 1 I 1
s Semnopithecus_priam.k141_363457                  6 60 -      2169 acagcagctattcaag--caatcttg----tataa-ccgcattgg-tgata-tcggcttt--atcctag-cc
i Semnopithecus_priam.k141_363457          I 1 I 1
s Semnopithecus_schistaceus.k141_929466        46281 60 -     62879 ACAGCAGCTATTCAAG--CAATCTTG----TATAA-CCGCATTGG-TGATA-TTGGCTTT--ATCCTAG-CC
i Semnopithecus_schistaceus.k141_929466    I 1 I 1
s Semnopithecus_vetulus.k141_490351             5152 60 -     39714 ACAGCAGCTATTCAAG--CAATCTTG----TATAA-CCGCATTGG-TGATA-TCGGCTTT--ATCCTAG-CC
i Semnopithecus_vetulus.k141_490351        I 1 I 1
s Theropithecus_gelada.CM009959.1           91754926 60 - 130230028 ACAGCAGCCACCCAAG--CAATCCTA----TACAA-CCGCATTGG-CGACA-TTGGCTTT--ATCCTAA-CC
i Theropithecus_gelada.CM009959.1          n 58 I 1
s Trachypithecus_auratus.k141_134546            9864 60 +     42513 acagcagctatccaag--caatcctg----tataa-ccgcattgg-caata-ttggcttt--atcctgg-cc
i Trachypithecus_auratus.k141_134546       I 1 I 1
s Trachypithecus_crepusculus.k141_460762       10746 60 -     15745 ACAGCAGCTATCCAAG--CAATCCTG----TATAA-CCGCATTGG-CAATA-TTGGCTTT--ATCCTGG-CC
i Trachypithecus_crepusculus.k141_460762   I 1 I 1
s Trachypithecus_cristatus.k141_249100          6950 60 +     39750 acagcagcTATCCAAG--CAATCCTG----TATAA-CCGCATTGG-CAATA-TTGGCttt--atcctgg-cc
i Trachypithecus_cristatus.k141_249100     I 1 I 1
s Trachypithecus_francoisi.k141_1327811         8955 60 +     23966 acagcagctatccaag--caatcctg----tataa-ccgcattgg-caata-ttggcttt--atcctgg-cc
i Trachypithecus_francoisi.k141_1327811    N 0 I 1
s Trachypithecus_geei.k141_975773              17467 60 +     48972 ACAGCAGCTATCCAAG--CAATCCTG----TATAA-CCGCATTGG-CAATA-TTGGCTTT--ATCCTGG-CC
i Trachypithecus_geei.k141_975773          I 1 I 1
s Trachypithecus_germaini.k141_962971           9983 60 -     41733 ACAGCAGCTATCCAAG--CAATCCTG----TATAA-CCGCATTGG-CAATA-TTGGCTTT--ATCCTGG-CC
i Trachypithecus_germaini.k141_962971      I 1 N 0
s Trachypithecus_hatinhensis.k141_631947        3380 60 +     11632 acagcagccatccaag--caatccta----tataa-ccgcattgg-cgata-tgggcttt--atcctaa-cc
i Trachypithecus_hatinhensis.k141_631947   I 1 I 1
s Trachypithecus_laotum.k141_54213              9767 60 -     40612 acagcagctatccaag--caatcctg----tataa-ccgcattgg-caata-ttggcttt--atcctgg-cc
i Trachypithecus_laotum.k141_54213         N 0 I 1
s Trachypithecus_leucocephalus.k141_307502      6131 60 -     13282 acagcagccatccaag--caatccta----tataa-ccgcattgg-cgata-tgggcttt--atcctaa-cc
i Trachypithecus_leucocephalus.k141_307502 I 1 I 1
s Trachypithecus_melamera.k141_163466           9929 60 +     13009 acagcagctatccaag--caatcctg----tataa-ccgcattgg-caata-ttggcttt--atcctgg-cc
i Trachypithecus_melamera.k141_163466      I 1 n 1
s Trachypithecus_obscurus.k141_359499           8955 60 -     22785 ACAGCAGCTATCCAAG--CAATCCTG----TATAA-CCGCATTGG-CAATA-TTGGCTTT--ATCCTGG-CC
i Trachypithecus_obscurus.k141_359499      I 1 N 0
s Trachypithecus_phayrei.ctg17              64155621 60 +  64442595 ACAGCAGCTATCCAAG--CAATCCTG----TATAA-CCGCATTGG-CAATA-TTGGCTTT--ATCCTGG-CC
i Trachypithecus_phayrei.ctg17             I 1 I 1
s Trachypithecus_pileatus.k141_682999           1565 60 -     32980 acagcagctatccaag--caatcctg----tataa-ccgcattgg-caata-ttggcttt--atcctgg-cc
i Trachypithecus_pileatus.k141_682999      I 1 I 1

a score=0.000000
s hg38.chrM                                    12891 1 +     16569 T
s Allenopithecus_nigroviridis.k141_3930415      8735 1 -     11164 a
i Allenopithecus_nigroviridis.k141_3930415 I 60 I 28
s Allochrocebus_lhoesti.k141_1513956            8484 1 +     44761 A
i Allochrocebus_lhoesti.k141_1513956       I 60 I 25
s Allochrocebus_preussi.k141_3466725            8501 1 +     53249 A
i Allochrocebus_preussi.k141_3466725       I 60 I 25
s Allochrocebus_solatus.k141_1287866            4803 1 +     13631 A
i Allochrocebus_solatus.k141_1287866       I 60 I 28
s Cercocebus_atys.KQ010367.1                11408549 1 -  11668111 A
i Cercocebus_atys.KQ010367.1               I 58 I 28
s Cercocebus_chrysogaster.k141_1945715         89559 1 -    105757 a
i Cercocebus_chrysogaster.k141_1945715     I 58 I 16
s Cercocebus_lunulatus.k141_2748568             1610 1 -      4674 a
i Cercocebus_lunulatus.k141_2748568        I 60 I 25
s Cercocebus_torquatus.k141_2422586              984 1 +      2016 A
i Cercocebus_torquatus.k141_2422586        I 60 I 28
s Cercopithecus_ascanius.k141_395955            1182 1 +     10858 a
i Cercopithecus_ascanius.k141_395955       I 60 I 25
s Cercopithecus_cephus.k141_294495              2645 1 -      5583 A
i Cercopithecus_cephus.k141_294495         C 0 I 25
s Cercopithecus_diana.k141_1147129             15439 1 +     57904 A
i Cercopithecus_diana.k141_1147129         I 60 n 1
s Cercopithecus_hamlyni.k141_1438427            5488 1 -     46742 A
i Cercopithecus_hamlyni.k141_1438427       I 60 I 25
s Cercopithecus_lowei.k141_3362039              1080 1 -      3644 A
i Cercopithecus_lowei.k141_3362039         I 60 C 0
s Cercopithecus_albogularis.ctg1272                   8642 1 +     15939 A
i Cercopithecus_albogularis.ctg1272              n 1 I 13
s Cercopithecus_mona.ctg42                  15303976 1 +  20621893 A
i Cercopithecus_mona.ctg42                 I 60 I 25
s Cercopithecus_neglectus.k141_2030378         10330 1 -     11116 A
i Cercopithecus_neglectus.k141_2030378     I 60 n 1
s Cercopithecus_nictitans.k141_3061810         12409 1 +     16647 a
i Cercopithecus_nictitans.k141_3061810     n 1 I 13
s Cercopithecus_petaurista.k141_1954245         2088 1 -     33246 A
i Cercopithecus_petaurista.k141_1954245    I 60 I 25
s Cercopithecus_pogonias.k141_1128599            492 1 +      1109 a
i Cercopithecus_pogonias.k141_1128599      I 60 C 0
s Cercopithecus_roloway.k141_2547499           13599 1 +     32417 a
i Cercopithecus_roloway.k141_2547499       I 60 I 28
s Chlorocebus_aethiops.ctg56                12889718 1 +  17892486 A
i Chlorocebus_aethiops.ctg56               I 60 I 25
s Chlorocebus_pygerythrus.k141_1337201         12347 1 -     14715 A
i Chlorocebus_pygerythrus.k141_1337201     I 60 n 60
s Chlorocebus_sabaeus.CM001941.2            72798842 1 + 126035930 A
i Chlorocebus_sabaeus.CM001941.2           I 60 n 60
s Colobus_angolensis.KN983729.1             10741371 1 +  35326507 A
i Colobus_angolensis.KN983729.1            I 61 I 16
s Colobus_guereza.LG01                      13229320 1 - 200372422 a
i Colobus_guereza.LG01                     I 61 I 16
s Colobus_polykomos.k141_1815305               13490 1 +     49352 a
i Colobus_polykomos.k141_1815305           I 61 I 16
s Erythrocebus_patas.Contig40               15742529 1 +  21278523 A
i Erythrocebus_patas.Contig40              I 60 I 25
s Gorilla_beringei.k141_1529327                16939 1 +     19115 A
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg101                4014360 1 +   8526212 a
i Lophocebus_aterrimus.ctg101              I 60 n 14
s Macaca_arctoides.k141_416589                  2446 1 -     26632 a
i Macaca_arctoides.k141_416589             I 60 n 1
s Macaca_assamensis.Contig5                 34322444 1 -  60120075 a
i Macaca_assamensis.Contig5                I 60 I 25
s Macaca_cyclopis.k119_512377                   5977 1 +     21625 A
i Macaca_cyclopis.k119_512377              I 60 I 25
s Macaca_fascicularis.k141_1173983             18972 1 -     25728 A
i Macaca_fascicularis.k141_1173983         I 60 C 0
s Macaca_fuscata.k119_959180                    5677 1 +     11606 a
i Macaca_fuscata.k119_959180               I 58 I 28
s Macaca_leonina.k141_3706292                  14341 1 -     29935 a
i Macaca_leonina.k141_3706292              I 60 I 25
s Macaca_maura.k141_1765751                    10528 1 -     48667 a
i Macaca_maura.k141_1765751                I 60 n 1
s Macaca_mulatta.NC_041756.1                54488635 1 + 185288947 A
i Macaca_mulatta.NC_041756.1               I 58 N 0
s Macaca_nemestrina.KQ005114.1               9180852 1 -   9503891 A
i Macaca_nemestrina.KQ005114.1             I 60 I 25
s Macaca_nigra.k141_563100                      9011 1 +     15148 a
i Macaca_nigra.k141_563100                 I 60 I 25
s Macaca_radiata.k141_501718                    2737 1 +     18260 A
i Macaca_radiata.k141_501718               I 60 I 25
s Macaca_siberu.k141_204286                    11471 1 +     30583 A
i Macaca_siberu.k141_204286                I 60 n 1
s Macaca_silenus.Contig1                    14194827 1 +  84276269 A
i Macaca_silenus.Contig1                   I 60 I 25
s Macaca_thibetana.k99_179800                   4599 1 +     12326 A
i Macaca_thibetana.k99_179800              I 58 I 28
s Macaca_tonkeana.k141_305781                  17323 1 +     94123 A
i Macaca_tonkeana.k141_305781              I 117 I 28
s Mandrillus_leucophaeus.scaffold228        12686442 1 -  20774610 A
i Mandrillus_leucophaeus.scaffold228       I 60 n 1
s Mandrillus_sphinx.Contig7                 14441333 1 +  51421834 A
i Mandrillus_sphinx.Contig7                I 60 I 25
s Miopithecus_ogouensis.k141_69083             11735 1 -     35729 A
i Miopithecus_ogouensis.k141_69083         I 60 n 60
s Nasalis_larvatus.k141_328248                 11066 1 +     15287 a
i Nasalis_larvatus.k141_328248             I 61 I 16
s Pan_paniscus.CM003385.1                  131191800 1 + 247869975 A
i Pan_paniscus.CM003385.1                  I 60 I 28
s Pan_troglodytes.CM009240.2               110737396 1 - 128755405 a
i Pan_troglodytes.CM009240.2               I 60 I 28
s Papio_anubis.CM001495.2                   34020741 1 - 183742232 A
i Papio_anubis.CM001495.2                  I 56 C 0
s Papio_cynocephalus.k141_1178521               2059 1 -      3223 A
i Papio_cynocephalus.k141_1178521          I 60 C 0
s Papio_hamadryas.Contig36                  14843982 1 +  22161365 a
i Papio_hamadryas.Contig36                 I 60 I 13
s Papio_kindae.k141_5429907                     2635 1 -     26587 a
i Papio_kindae.k141_5429907                I 60 n 27
s Papio_papio.k141_2436119                     35244 1 -     56783 a
i Papio_papio.k141_2436119                 I 60 C 0
s Papio_ursinus.k141_4118998                    5378 1 +      5483 A
i Papio_ursinus.k141_4118998               I 60 C 0
s Piliocolobus_badius.k141_1592142              1877 1 +      8439 A
i Piliocolobus_badius.k141_1592142         n 30 I 16
s Piliocolobus_gordonorum.k141_399085           8140 1 -     13842 T
i Piliocolobus_gordonorum.k141_399085      I 122 I 28
s Piliocolobus_kirkii.k141_1370971              7354 1 -     12918 C
i Piliocolobus_kirkii.k141_1370971         I 122 I 28
s Piliocolobus_tephrosceles.PDMG02000071.1  32995376 1 -  33944683 A
i Piliocolobus_tephrosceles.PDMG02000071.1 I 758 I 28
s Pongo_abelii.CM009269.2                  128598994 1 - 145408105 A
i Pongo_abelii.CM009269.2                  C 0 n 0
s Pongo_pygmaeus.ctg463                       335028 1 +    482523 A
i Pongo_pygmaeus.ctg463                    C 0 C 0
s Presbytis_comata.k141_1013241                18678 1 +     21385 a
i Presbytis_comata.k141_1013241            I 60 I 28
s Presbytis_mitrata.k141_605190                26626 1 +     42743 a
i Presbytis_mitrata.k141_605190            I 61 I 28
s Pygathrix_cinerea.k141_145450                 4124 1 +      7128 a
i Pygathrix_cinerea.k141_145450            I 61 I 16
s Pygathrix_nigripes_b.ctg443                    245651 1 -    297984 a
i Pygathrix_nigripes_b.ctg443                 I 61 I 16
s Pygathrix_nigripes_a.k141_320050               10946 1 +     22551 a
i Pygathrix_nigripes_a.k141_320050           I 61 I 16
s Rhinopithecus_bieti.k119_96236                6843 1 +     11866 a
i Rhinopithecus_bieti.k119_96236           I 61 I 16
s Rhinopithecus_roxellana.NC_044554.1       37414984 1 + 156498330 a
i Rhinopithecus_roxellana.NC_044554.1      I 61 I 16
s Rhinopithecus_strykeri.ctg264              1311915 1 -   1425303 a
i Rhinopithecus_strykeri.ctg264            I 61 I 16
s Theropithecus_gelada.CM009952.1          182322925 1 - 183260707 A
i Theropithecus_gelada.CM009952.1          I 58 I 28
e Trachypithecus_pileatus.k141_682999           1625 1 -     32980 I
e Trachypithecus_phayrei.ctg17              64155681 1 +  64442595 I
e Trachypithecus_melamera.k141_163466           9989 1 +     13009 I
e Trachypithecus_leucocephalus.k141_307502      6191 1 -     13282 I
e Trachypithecus_laotum.k141_54213              9827 1 -     40612 I
e Trachypithecus_hatinhensis.k141_631947        3440 1 +     11632 I
e Trachypithecus_geei.k141_975773              17527 1 +     48972 I
e Trachypithecus_francoisi.k141_1327811         9015 1 +     23966 I
e Trachypithecus_cristatus.k141_249100          7010 1 +     39750 I
e Trachypithecus_crepusculus.k141_460762       10806 1 -     15745 I
e Trachypithecus_auratus.k141_134546            9924 1 +     42513 I
e Semnopithecus_vetulus.k141_490351             5212 1 -     39714 I
e Semnopithecus_schistaceus.k141_929466        46341 1 -     62879 I
e Semnopithecus_priam.k141_363457                 66 1 -      2169 I
e Semnopithecus_johnii.k141_1602740             4384 1 +     77299 I
e Semnopithecus_hypoleucos.k141_2248933        47049 1 +    111052 I

a score=0.000000
s hg38.chrM                                    12892 16 +     16569 TAGCA--TGATTT--AT-CCT
s Allenopithecus_nigroviridis.k141_4289073     27266 16 +    127561 tagca--tgattt--ct-tct
i Allenopithecus_nigroviridis.k141_4289073 T 16529 n 28
s Allochrocebus_lhoesti.k141_1288440            2919 16 -     10247 TAACA--TGATTT--CT-CCT
i Allochrocebus_lhoesti.k141_1288440       I 1 n 25
s Allochrocebus_preussi.k141_1036589            7410 16 -     14749 TAACA--TGATGT--CT-CCT
i Allochrocebus_preussi.k141_1036589       I 1 n 25
s Allochrocebus_solatus.k141_1664502            7169 16 +     14510 TAACA--TGATTT--CT-CCT
i Allochrocebus_solatus.k141_1664502       I 1 n 28
s Cercocebus_atys.KQ011505.1                 2105777 16 +   2368337 TAACA--TGGTTT--CT-CCT
i Cercocebus_atys.KQ011505.1               I 1 C 0
s Cercocebus_chrysogaster.k141_1327900          3896 16 -      8025 TAGCA--TGATTT--CT-CTC
i Cercocebus_chrysogaster.k141_1327900     I 152 n 16
s Cercocebus_lunulatus.k141_4324092             1438 16 +      2664 taaca--tggttt--ct-cct
i Cercocebus_lunulatus.k141_4324092        I 1 C 0
s Cercocebus_torquatus.k141_72584               3447 16 +     30577 taaca--tggttt--ct-cct
i Cercocebus_torquatus.k141_72584          I 1 C 0
s Cercopithecus_ascanius.k141_4105459            930 15 -      9485 TAGCC--TGATTC--Ct-ct-
i Cercopithecus_ascanius.k141_4105459      I 1 C 0
s Cercopithecus_cephus.k141_2148804              927 16 -     15429 TAGCC--TGATTC--CT-CTT
i Cercopithecus_cephus.k141_2148804        I 675 C 0
s Cercopithecus_diana.k141_2154515              3291 16 -      9500 TAACA--TGGTTT--CT-CCT
i Cercopithecus_diana.k141_2154515         I 1 I 13
s Cercopithecus_hamlyni.k141_670643              831 16 -      2013 TAACA--TGATTT--CT-CCT
i Cercopithecus_hamlyni.k141_670643        I 1 n 25
s Cercopithecus_lowei.k141_3362039              1081 16 -      3644 TAACA--TGATTCTTCT-C--
i Cercopithecus_lowei.k141_3362039         C 0 I 12
s Cercopithecus_albogularis.ctg213                 2144563 16 +   2308918 TAACA--TGGTTT--CT-CCT
i Cercopithecus_albogularis.ctg213               I 1 n 13
s Cercopithecus_mona.ctg49                  18627612 16 +  18760735 tagca--tgattT--CT-TCT
i Cercopithecus_mona.ctg49                 I 1 C 0
s Cercopithecus_neglectus.k141_1316281          3958 16 +      4583 TAACA--TGGTTT--CT-CCT
i Cercopithecus_neglectus.k141_1316281     I 1 n 1
s Cercopithecus_nictitans.k141_701113           7441 16 -     10034 TAACA--TGGTTT--CT-CCT
i Cercopithecus_nictitans.k141_701113      I 1 n 13
s Cercopithecus_petaurista.k141_1267320         8204 16 +     62060 TAACA--TGGTTT--CT-CCT
i Cercopithecus_petaurista.k141_1267320    I 1 n 25
s Cercopithecus_pogonias.k141_1128599            493 16 +      1109 taaca--tgattcttct-c--
i Cercopithecus_pogonias.k141_1128599      C 0 I 12
s Cercopithecus_roloway.k141_316845            45539 16 +     52695 tagca--tgattc--ct-ctt
i Cercopithecus_roloway.k141_316845        n 28 n 28
s Chlorocebus_aethiops.ctg532                 225768 16 -    463733 TAACA--TGATTT--CT-CCT
i Chlorocebus_aethiops.ctg532              I 1 n 25
s Chlorocebus_pygerythrus.k141_1433182          8135 16 -     17062 TAACA--TGATTT--CT-CCT
i Chlorocebus_pygerythrus.k141_1433182     I 671 n 60
s Chlorocebus_sabaeus.CM001951.2            76581417 16 - 130038232 TAACA--TGATTT--CT-CCT
i Chlorocebus_sabaeus.CM001951.2           I 803 n 60
s Colobus_angolensis.KN980972.1              2051678 16 +   4172716 TAGCA--TGATTT--CT-CTT
i Colobus_angolensis.KN980972.1            I 1 n 16
s Colobus_guereza.LG09                     103629107 16 - 145964134 tagca--tgattt--ct-ctt
i Colobus_guereza.LG09                     I 1 n 16
s Colobus_polykomos.k141_37369                  1218 16 -     39600 tagca--tgattt--ct-cct
i Colobus_polykomos.k141_37369             n 16 n 16
s Erythrocebus_patas.Contig26               18889869 16 -  25684326 TGGCA--TGATTC--CT-TCT
i Erythrocebus_patas.Contig26              n 25 n 25
s Gorilla_beringei.k141_1529327                16940 16 +     19115 TAGCA--TGATTC--CT-CTC
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg653                1050630 16 +   1282537 TAGCA--TGATTC--CT-CTC
i Lophocebus_aterrimus.ctg653              I 120 n 14
s Macaca_arctoides.k141_1510892                 8179 16 +     52312 taaca--tggttt--ct-cct
i Macaca_arctoides.k141_1510892            I 1 n 1
s Macaca_assamensis.Contig25                27971826 16 +  32714874 tagca--tggttt--ct-cct
i Macaca_assamensis.Contig25               I 1 C 0
s Macaca_cyclopis.k119_1007290                 16241 16 -     20333 tagca--tgattt--ct-ctC
i Macaca_cyclopis.k119_1007290             I 152 n 25
s Macaca_fascicularis.k141_1173983             18973 16 -     25728 TAGCA--TGATTT--CT-CTC
i Macaca_fascicularis.k141_1173983         C 0 I 9
s Macaca_fuscata.k119_424838                   15155 16 +     21166 TAGCA--TGATtt--ct-cTC
i Macaca_fuscata.k119_424838               I 152 n 28
s Macaca_leonina.k141_1704274                   2967 16 +     47902 taaca--tggttt--ct-cct
i Macaca_leonina.k141_1704274              I 1 n 25
s Macaca_maura.k141_937566                      3006 16 +     48221 TAACA--TGGTTT--CT-CCT
i Macaca_maura.k141_937566                 I 1 n 1
s Macaca_mulatta.NC_041756.1                58577040 16 + 185288947 TAGCA--TGATTT--CT-CTC
i Macaca_mulatta.NC_041756.1               N 0 N 0
s Macaca_nemestrina.KQ004951.1               2234508 16 +   6857701 TAACA--TGGTTT--CT-CCT
i Macaca_nemestrina.KQ004951.1             I 1 I 13
s Macaca_nigra.k141_1728683                    20315 16 +    134473 taaca--tggttt--ct-cct
i Macaca_nigra.k141_1728683                I 1 n 25
s Macaca_radiata.k141_2715046                   8047 16 -     52465 TAACA--TGGTTT--CT-CCT
i Macaca_radiata.k141_2715046              I 1 n 25
s Macaca_siberu.k141_201044                     7973 16 -     51894 TAACA--TGGTTT--CT-CCT
i Macaca_siberu.k141_201044                I 1 n 1
s Macaca_silenus.Contig160                   2097503 16 +   2276234 taaca--tggttt--ct-cct
i Macaca_silenus.Contig160                 I 1 n 25
s Macaca_thibetana.k99_67188                    5919 16 -     11359 TAACA--TGGTTT--CT-CCT
i Macaca_thibetana.k99_67188               I 1 n 28
s Macaca_tonkeana.k141_2378819                  6813 16 -     13010 tagca--tgattt--ct-ctc
i Macaca_tonkeana.k141_2378819             I 1 n 28
s Mandrillus_leucophaeus.scaffold997            3959 16 -     22164 taaca--tggttt--ct-cct
i Mandrillus_leucophaeus.scaffold997       I 1 C 0
s Mandrillus_sphinx.Contig188                2158009 16 +   2279980 taaca--tgattt--ct-cct
i Mandrillus_sphinx.Contig188              I 1 C 0
s Miopithecus_ogouensis.k141_1060846           14296 16 +     17472 TAACA--TGATTT--CT-CCT
i Miopithecus_ogouensis.k141_1060846       I 62 n 60
s Nasalis_larvatus.k141_772271                  7220 16 +     15527 TAACA--TGATTT--CT-CCT
i Nasalis_larvatus.k141_772271             I 1 n 16
s Pan_paniscus.CM003392.1                  115198614 17 - 138149186 TACCA--TGATTC--CTACCT
i Pan_paniscus.CM003392.1                  I 538 I 13
s Pan_troglodytes.CM009251.2                68976813 16 +  95599650 TAGCA--TGATTT--CT-CCT
i Pan_troglodytes.CM009251.2               I 1 C 0
s Papio_anubis.CM001495.2                   34020742 11 - 183742232 TAGCA--TTG--C--AT----
i Papio_anubis.CM001495.2                  C 0 C 0
s Papio_cynocephalus.k141_1178521               2060 13 -      3223 TAGCA--TGATTT--CT----
i Papio_cynocephalus.k141_1178521          C 0 I 12
s Papio_hamadryas.Contig1302                    1292 13 +     34057 tagca--tgattt--ct----
i Papio_hamadryas.Contig1302               n 13 n 13
s Papio_kindae.k141_5192634                     6290 13 -      7104 tagca--tgattc--ct----
i Papio_kindae.k141_5192634                I 120 C 0
s Papio_papio.k141_2436119                     35245 13 -     56783 tagca--ttgttc--AT----
i Papio_papio.k141_2436119                 C 0 C 0
s Papio_ursinus.k141_4118998                    5379 13 +      5483 TAGCA--TGATTT--CT----
i Papio_ursinus.k141_4118998               C 0 I 12
s Piliocolobus_badius.k141_1028465               992 16 -     35776 TAGCA--TGATTT--CT-CCT
i Piliocolobus_badius.k141_1028465         I 801 n 16
s Piliocolobus_gordonorum.k141_172991           3022 16 -     10919 taaca--tgattt--ct-cct
i Piliocolobus_gordonorum.k141_172991      T 1008 n 28
s Piliocolobus_kirkii.k141_176343               3289 16 +     45481 taaca--tgattt--ct-cct
i Piliocolobus_kirkii.k141_176343          T 1008 n 28
s Piliocolobus_tephrosceles.PDMG02000160.1   6872575 16 -   7768499 TAGCA--TGATTT--CT-CCT
i Piliocolobus_tephrosceles.PDMG02000160.1 I 1 n 28
s Pongo_abelii.CM009264.2                     449338 16 + 129937803 TAGCA--TGATTC--CT-CAC
i Pongo_abelii.CM009264.2                  I 61 C 0
s Pongo_pygmaeus.ctg463                       335029 16 +    482523 TAGCA--TGATTC--CT-CTC
i Pongo_pygmaeus.ctg463                    C 0 n 0
s Presbytis_comata.k141_1478785                 1355 16 -      3993 TAGCA--TGATTT--CT-CCT
i Presbytis_comata.k141_1478785            I 1 n 28
s Presbytis_mitrata.k141_1781651                1449 16 +      4842 TAGCA--TGATTT--CT-CCT
i Presbytis_mitrata.k141_1781651           n 28 n 28
s Pygathrix_cinerea.k141_865802                14748 16 -     15891 taaca--tgattt--ct-cct
i Pygathrix_cinerea.k141_865802            I 1 n 16
s Pygathrix_nigripes_b.ctg2                    28528296 16 +  35829140 taaca--tgattT--CT-CCT
i Pygathrix_nigripes_b.ctg2                   I 544 n 16
s Pygathrix_nigripes_a.k141_1097291                343 16 -     27436 taaca--tgattt--ct-cct
i Pygathrix_nigripes_a.k141_1097291          n 16 n 16
s Rhinopithecus_bieti.k119_390069               1725 16 +      6100 taaca--tgattt--ct-cct
i Rhinopithecus_bieti.k119_390069          I 1 n 16
s Rhinopithecus_roxellana.NC_044549.1       86161897 16 + 206558726 TAACA--TGATTT--CT-CCT
i Rhinopithecus_roxellana.NC_044549.1      n 16 n 16
s Rhinopithecus_strykeri.ctg27              28426560 16 -  35768626 TAACA--TGATTT--CT-CCT
i Rhinopithecus_strykeri.ctg27             I 801 n 16
s Semnopithecus_hypoleucos.k141_2248933        47050 16 +    111052 taaca--tgattt--ct-cct
i Semnopithecus_hypoleucos.k141_2248933    I 1 C 0
s Semnopithecus_johnii.k141_1602740             4385 16 +     77299 TAACA--TGATTT--CT-CCT
i Semnopithecus_johnii.k141_1602740        I 1 C 0
s Semnopithecus_priam.k141_363457                 67 16 -      2169 taaca--tgattt--ct-cct
i Semnopithecus_priam.k141_363457          I 1 C 0
s Semnopithecus_schistaceus.k141_929466        46342 16 -     62879 TAACA--TGATTT--CT-CCT
i Semnopithecus_schistaceus.k141_929466    I 1 C 0
s Semnopithecus_vetulus.k141_490351             5213 16 -     39714 TAACA--TGATTT--CT-CCT
i Semnopithecus_vetulus.k141_490351        I 1 C 0
s Theropithecus_gelada.CM009959.1           91754987 16 - 130230028 TAACA--TGGTTT--CT-CCT
i Theropithecus_gelada.CM009959.1          I 1 C 0
s Trachypithecus_auratus.k141_134546            9925 16 +     42513 taaca--tgattt--ct-cct
i Trachypithecus_auratus.k141_134546       I 1 C 0
s Trachypithecus_crepusculus.k141_460762       10807 16 -     15745 TAACA--TGATTT--CT-CCT
i Trachypithecus_crepusculus.k141_460762   I 1 C 0
s Trachypithecus_cristatus.k141_249100          7011 16 +     39750 taaca--tgattt--ct-cct
i Trachypithecus_cristatus.k141_249100     I 1 C 0
s Trachypithecus_francoisi.k141_1327811         9016 16 +     23966 taaca--tgattt--ct-cct
i Trachypithecus_francoisi.k141_1327811    I 1 C 0
s Trachypithecus_geei.k141_975773              17528 16 +     48972 TAACA--TGATTT--CT-CCT
i Trachypithecus_geei.k141_975773          I 1 C 0
s Trachypithecus_germaini.k141_922466           9921 16 -     11678 TAACA--TGATTT--CT-CCT
i Trachypithecus_germaini.k141_922466      N 0 C 0
s Trachypithecus_hatinhensis.k141_631947        3441 16 +     11632 taaca--tgattt--ct-cct
i Trachypithecus_hatinhensis.k141_631947   I 1 C 0
s Trachypithecus_laotum.k141_54213              9828 16 -     40612 taaca--tgattt--ct-cct
i Trachypithecus_laotum.k141_54213         I 1 C 0
s Trachypithecus_leucocephalus.k141_307502      6192 16 -     13282 taaca--tgattt--ct-cct
i Trachypithecus_leucocephalus.k141_307502 I 1 C 0
s Trachypithecus_melamera.k141_283087           5543 16 +      6832 TAGCA--Tgattt--ct-cct
i Trachypithecus_melamera.k141_283087      I 767 C 0
s Trachypithecus_obscurus.k141_838013           2982 16 +      6290 TAACA--TGATTT--CT-CCT
i Trachypithecus_obscurus.k141_838013      N 0 C 0
s Trachypithecus_phayrei.ctg17              64155682 16 +  64442595 TAACA--TGATTT--CT-CCT
i Trachypithecus_phayrei.ctg17             I 1 C 0
s Trachypithecus_pileatus.k141_682999           1626 16 -     32980 taaca--tgattt--ct-cct
i Trachypithecus_pileatus.k141_682999      I 1 C 0

a score=0.000000
s hg38.chrM                                    12908 12 +     16569 ACA---CTCC-----------A------ACTC
s Allenopithecus_nigroviridis.k141_4304654      8217 12 +     24829 ACA---CTAC-----------A------ACTC
i Allenopithecus_nigroviridis.k141_4304654 I 775 n 28
s Allochrocebus_lhoesti.k141_2296955           22279 12 -     43988 ACA---TTAC-----------A------ACTC
i Allochrocebus_lhoesti.k141_2296955       n 25 I 1
s Allochrocebus_preussi.k141_1679966           19313 12 +     25248 ACA---TTAC-----------A------ACTC
i Allochrocebus_preussi.k141_1679966       n 25 I 1
s Allochrocebus_solatus.k141_2155072           13122 12 -     23979 ACA---TTAC-----------A------ACTC
i Allochrocebus_solatus.k141_2155072       n 28 I 1
s Cercocebus_atys.KQ011505.1                 2105793 12 +   2368337 ACA---TTAT-----------A------ACTC
i Cercocebus_atys.KQ011505.1               C 0 n 0
s Cercocebus_chrysogaster.k141_1945715         89576 12 -    105757 att---ctcc-----------a------atac
i Cercocebus_chrysogaster.k141_1945715     I 16 C 0
s Cercocebus_lunulatus.k141_4324092             1454 12 +      2664 aCA---Ttat-----------a------actc
i Cercocebus_lunulatus.k141_4324092        C 0 n 0
s Cercocebus_torquatus.k141_72584               3463 12 +     30577 aca---ttat-----------a------actc
i Cercocebus_torquatus.k141_72584          C 0 n 0
s Cercopithecus_ascanius.k141_4105459            945  8 -      9485 -------tac-----------a------ACTC
i Cercopithecus_ascanius.k141_4105459      C 0 I 1
s Cercopithecus_cephus.k141_2148804              943 12 -     15429 ACA---CTAC-----------A------ACTC
i Cercopithecus_cephus.k141_2148804        C 0 n 0
s Cercopithecus_diana.k141_1081359             14786 12 +     21209 ACA---CTAC-----------A------ACTC
i Cercopithecus_diana.k141_1081359         n 13 n 13
s Cercopithecus_hamlyni.k141_285549            23818 12 -     38690 ACA---CTAC-----------A------ACTC
i Cercopithecus_hamlyni.k141_285549        I 692 n 25
s Cercopithecus_lowei.k141_1815585              3974 12 +      4563 ACA---CTAC-----------A------ACTC
i Cercopithecus_lowei.k141_1815585         I 774 I 1
s Cercopithecus_albogularis.ctg1272                   8656 15 +     15939 TCTACACTAT-----------A------ACTC
i Cercopithecus_albogularis.ctg1272              I 13 I 1
s Cercopithecus_mona.ctg49                  18627628 12 +  18760735 ACA---CCAC-----------A------Actc
i Cercopithecus_mona.ctg49                 C 0 n 0
s Cercopithecus_neglectus.k141_790885           2681 12 -      7576 ACA---CTAC-----------A------ACTC
i Cercopithecus_neglectus.k141_790885      I 692 I 1
s Cercopithecus_nictitans.k141_3061810         12423 15 +     16647 tctacactac-----------a------actc
i Cercopithecus_nictitans.k141_3061810     I 13 C 0
s Cercopithecus_petaurista.k141_2710281         6806 12 +     15186 ACA---CTAC-----------A------ACTC
i Cercopithecus_petaurista.k141_2710281    I 692 n 25
s Cercopithecus_pogonias.k141_1251620           3626 12 +      6713 ACA---CTAC-----------A------ACTC
i Cercopithecus_pogonias.k141_1251620      I 691 n 12
s Cercopithecus_roloway.k141_1691974            8667 12 +     16949 ACA---CTAC-----------A------ACTC
i Cercopithecus_roloway.k141_1691974       n 28 n 28
s Chlorocebus_aethiops.ctg5                 11819354 12 -  12361934 ACA---CTAc-----------a------actc
i Chlorocebus_aethiops.ctg5                n 25 n 25
s Chlorocebus_pygerythrus.k141_417274          11718 12 -     16491 ACA---CTAC-----------A------ACTC
i Chlorocebus_pygerythrus.k141_417274      n 60 n 60
s Chlorocebus_sabaeus.CM001945.1            74880562 12 +  75399963 ACA---CTAC-----------A------ACTC
i Chlorocebus_sabaeus.CM001945.1           n 60 n 60
s Colobus_angolensis.KN983729.1             10741388 23 +  35326507 ATA---CTATTCTCCCTAGCAA------ACTC
i Colobus_angolensis.KN983729.1            I 16 I 8
s Colobus_guereza.LG01                      13229337 23 - 200372422 ata---ctattctgcctagcaa------aTTC
i Colobus_guereza.LG01                     I 16 I 8
s Colobus_polykomos.k141_1815305               13507 23 +     49352 ata---ctattctccctagcaa------actc
i Colobus_polykomos.k141_1815305           I 16 I 8
s Erythrocebus_patas.Contig3274                 7427 12 -     15413 ata---ctac-----------a------actc
i Erythrocebus_patas.Contig3274            I 688 n 25
s Gorilla_beringei.k141_1529327                16956 12 +     19115 ATC---CTGC-----------A------ATAC
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg47                 6876758 12 -  17053299 GTC---CTCC-----------A------ACAC
i Lophocebus_aterrimus.ctg47               I 14 C 0
s Macaca_arctoides.k141_1654500                 2835 12 -      7080 ACA---CTAC-----------A------ACTC
i Macaca_arctoides.k141_1654500            n 1 n 1
s Macaca_assamensis.Contig25                27971842 12 +  32714874 ACA---TTAc-----------a------actc
i Macaca_assamensis.Contig25               C 0 n 0
s Macaca_cyclopis.k119_113522                   3818 12 +     16345 aca---ctac-----------a------actc
i Macaca_cyclopis.k119_113522              I 775 n 25
s Macaca_fascicularis.k141_751310               2193 12 -     31541 aca---ctac-----------a------actc
i Macaca_fascicularis.k141_751310          I 694 n 9
s Macaca_fuscata.k119_1151878                   2385 12 +     14929 aca---ctac-----------a------actc
i Macaca_fuscata.k119_1151878              I 694 I 1
s Macaca_leonina.k141_2333587                   9161 12 -     14201 aca---ctac-----------a------actc
i Macaca_leonina.k141_2333587              I 768 n 25
s Macaca_maura.k141_187516                      1487 12 +     27055 aca---ctac-----------a------actc
i Macaca_maura.k141_187516                 I 775 n 1
s Macaca_mulatta.NC_041758.1               122374956 12 - 187317192 ACA---CTAC-----------A------ACTC
i Macaca_mulatta.NC_041758.1               N 0 N 0
s Macaca_nemestrina.KQ006443.1              26589112 12 +  26754465 ACA---CTAC-----------A------ACTC
i Macaca_nemestrina.KQ006443.1             I 775 n 13
s Macaca_nigra.k141_1798113                     1516 12 +     14068 ACA---CTAC-----------A------ACTC
i Macaca_nigra.k141_1798113                I 775 n 25
s Macaca_radiata.k141_950901                    4166 12 -     16265 ACA---CTAC-----------A------ACTC
i Macaca_radiata.k141_950901               I 775 n 25
s Macaca_siberu.k141_521944                    11456 12 -     25677 ACA---CTAc-----------a------actc
i Macaca_siberu.k141_521944                I 775 n 1
s Macaca_silenus.Contig910                     33179 12 +     52787 aca---ttac-----------a------actc
i Macaca_silenus.Contig910                 n 25 n 25
s Macaca_thibetana.k99_252870                   1817 12 -      7401 ACA---CTAC-----------A------ACTC
i Macaca_thibetana.k99_252870              I 772 I 1
s Macaca_tonkeana.k141_461656                   7716 12 -     20280 aca---ctac-----------a------actc
i Macaca_tonkeana.k141_461656              I 775 I 1
s Mandrillus_leucophaeus.scaffold997            3975 12 -     22164 aca---ttat-----------a------actc
i Mandrillus_leucophaeus.scaffold997       C 0 n 0
s Mandrillus_sphinx.Contig188                2158025 12 +   2279980 gca---ttat-----------a------actc
i Mandrillus_sphinx.Contig188              C 0 n 0
s Miopithecus_ogouensis.k141_744758             2561 12 +     16671 ACA---CTAC-----------A------ACTC
i Miopithecus_ogouensis.k141_744758        I 692 N 0
s Nasalis_larvatus.k141_328248                 11083 23 +     15287 tta---ctattctgcctagcaa------attc
i Nasalis_larvatus.k141_328248             I 16 I 8
s Pan_paniscus.KT153251.1                      12353 12 +     16605 ACA---CTCC-----------A------ACTC
i Pan_paniscus.KT153251.1                  I 17 I 167
s Pan_troglodytes.CM009251.2                68976829 12 +  95599650 ACA---CTCC-----------A------ACTC
i Pan_troglodytes.CM009251.2               C 0 n 0
s Papio_anubis.CM001495.2                   34020753 12 - 183742232 GTC---CCCA-----------A------ACAC
i Papio_anubis.CM001495.2                  C 0 C 0
s Papio_cynocephalus.k141_3949568               7531 15 -      8346 ctcattctcc-----------a------atac
i Papio_cynocephalus.k141_3949568          I 133 n 12
s Papio_hamadryas.Contig36                  14843996 12 +  22161365 GTC---CTCC-----------A------ACAC
i Papio_hamadryas.Contig36                 I 13 C 0
s Papio_kindae.k141_5192634                     6303 15 -      7104 ctcattctcc-----------a------atac
i Papio_kindae.k141_5192634                C 0 C 0
s Papio_papio.k141_2436119                     35258 12 -     56783 GTC---CTCC-----------A------ACAC
i Papio_papio.k141_2436119                 C 0 C 0
s Papio_ursinus.k141_2685680                   12527 12 +     15956 GTC---CTCC-----------A------ACAC
i Papio_ursinus.k141_2685680               I 14 I 1
s Piliocolobus_badius.k141_1592142              1894 23 +      8439 ATA---CTATTCTCCCTAGCAA------ACTC
i Piliocolobus_badius.k141_1592142         I 16 I 8
s Piliocolobus_gordonorum.k141_668257           3172 12 -     15642 aca---ctac-----------a------actc
i Piliocolobus_gordonorum.k141_668257      I 78 n 28
s Piliocolobus_kirkii.k141_1218120              7740 12 +     20242 ACA---CTAC-----------A------ACTC
i Piliocolobus_kirkii.k141_1218120         I 17 n 28
s Piliocolobus_tephrosceles.PDMG02000330.1   3888730 12 +   3937312 aca---ctac-----------a------actc
i Piliocolobus_tephrosceles.PDMG02000330.1 I 754 n 28
s Pongo_abelii.CM009264.2                     449354 12 + 129937803 ATC---CTCC-----------A------ATAC
i Pongo_abelii.CM009264.2                  C 0 C 0
s Pongo_pygmaeus.ctg463                       318033 12 -    482523 ATC---TTAC-----------A------ATAC
i Pongo_pygmaeus.ctg463                    I 77 C 0
s Presbytis_comata.k141_242529                  5727 29 +     22987 ata---ctattctccctaTGAATGAACTATTC
i Presbytis_comata.k141_242529             n 28 n 28
s Presbytis_mitrata.k141_1394585               10968 29 -     22923 ata---ctattctccctaTGAATGAACTattc
i Presbytis_mitrata.k141_1394585           n 28 n 28
s Pygathrix_cinerea.k141_145450                 4141 23 +      7128 tta---ctattctgcctagcaa------attc
i Pygathrix_cinerea.k141_145450            I 16 I 8
s Pygathrix_nigripes_b.ctg443                    245668 23 -    297984 tta---ctattctgcctagcaa------attc
i Pygathrix_nigripes_b.ctg443                 I 16 I 8
s Pygathrix_nigripes_a.k141_320050               10963 23 +     22551 tta---ctattctgcctagcaa------attc
i Pygathrix_nigripes_a.k141_320050           I 16 I 8
s Rhinopithecus_bieti.k119_96236                6860 23 +     11866 tta---ctattctgcctagcaa------attc
i Rhinopithecus_bieti.k119_96236           I 16 I 8
s Rhinopithecus_roxellana.NC_044554.1       37415001 23 + 156498330 tta---ctattctgcctagcaa------attc
i Rhinopithecus_roxellana.NC_044554.1      I 16 I 8
s Rhinopithecus_strykeri.ctg264              1311932 23 -   1425303 tta---ctattctgcctagcaa------attc
i Rhinopithecus_strykeri.ctg264            I 16 I 8
s Semnopithecus_hypoleucos.k141_2248933        47066 12 +    111052 GCA---TTAT-----------A------ACTC
i Semnopithecus_hypoleucos.k141_2248933    C 0 I 1
s Semnopithecus_johnii.k141_1602740             4401 12 +     77299 GCA---TTAT-----------A------ACTC
i Semnopithecus_johnii.k141_1602740        C 0 I 1
s Semnopithecus_priam.k141_363457                 83 12 -      2169 gca---ttat-----------a------actc
i Semnopithecus_priam.k141_363457          C 0 I 1
s Semnopithecus_schistaceus.k141_929466        46358 12 -     62879 GCA---TTAT-----------A------ACTC
i Semnopithecus_schistaceus.k141_929466    C 0 I 1
s Semnopithecus_vetulus.k141_490351             5229 12 -     39714 GCA---TTAT-----------A------ACTC
i Semnopithecus_vetulus.k141_490351        C 0 I 1
s Theropithecus_gelada.CM009959.1           91755003 12 - 130230028 ACA---TTAT-----------A------ACTC
i Theropithecus_gelada.CM009959.1          C 0 I 1
s Trachypithecus_auratus.k141_134546            9941 12 +     42513 ACA---TTAT-----------A------ACTC
i Trachypithecus_auratus.k141_134546       C 0 I 1
s Trachypithecus_crepusculus.k141_460762       10823 12 -     15745 ACA---TTAT-----------A------ACTC
i Trachypithecus_crepusculus.k141_460762   C 0 I 1
s Trachypithecus_cristatus.k141_249100          7027 12 +     39750 aca---ttat-----------a------actc
i Trachypithecus_cristatus.k141_249100     C 0 I 1
s Trachypithecus_francoisi.k141_1327811         9032 12 +     23966 aca---ttat-----------a------actc
i Trachypithecus_francoisi.k141_1327811    C 0 N 0
s Trachypithecus_geei.k141_975773              17544 12 +     48972 ACA---TTAT-----------A------ACTC
i Trachypithecus_geei.k141_975773          C 0 I 1
s Trachypithecus_germaini.k141_922466           9937 12 -     11678 ACA---TTAT-----------A------ACTC
i Trachypithecus_germaini.k141_922466      C 0 I 1
s Trachypithecus_hatinhensis.k141_631947        3457 12 +     11632 aca---ttat-----------a------actc
i Trachypithecus_hatinhensis.k141_631947   C 0 I 1
s Trachypithecus_laotum.k141_54213              9844 12 -     40612 aca---ttat-----------a------actc
i Trachypithecus_laotum.k141_54213         C 0 N 0
s Trachypithecus_leucocephalus.k141_307502      6208 12 -     13282 aca---ttat-----------a------actc
i Trachypithecus_leucocephalus.k141_307502 C 0 I 1
s Trachypithecus_melamera.k141_283087           5559 12 +      6832 ACA---TTAT-----------A------ACTC
i Trachypithecus_melamera.k141_283087      C 0 I 1
s Trachypithecus_obscurus.k141_838013           2998 12 +      6290 ACA---TTAT-----------A------ACTC
i Trachypithecus_obscurus.k141_838013      C 0 I 1
s Trachypithecus_phayrei.ctg17              64155698 12 +  64442595 ACA---TTAT-----------A------ACTC
i Trachypithecus_phayrei.ctg17             C 0 I 1
s Trachypithecus_pileatus.k141_682999           1642 12 -     32980 aca---ttat-----------a------actc
i Trachypithecus_pileatus.k141_682999      C 0 I 1

a score=0.000000
s hg38.chrM                                    12920 1 +     16569 A
s Allenopithecus_nigroviridis.k141_3930415      8764 1 -     11164 a
i Allenopithecus_nigroviridis.k141_3930415 I 28 n 28
s Allochrocebus_lhoesti.k141_1513956            8510 1 +     44761 A
i Allochrocebus_lhoesti.k141_1513956       I 25 n 1
s Allochrocebus_preussi.k141_3466725            8527 1 +     53249 A
i Allochrocebus_preussi.k141_3466725       I 25 n 1
s Allochrocebus_solatus.k141_1287866            4832 1 +     13631 A
i Allochrocebus_solatus.k141_1287866       I 28 n 1
s Cercocebus_atys.KQ010367.1                11408578 1 -  11668111 A
i Cercocebus_atys.KQ010367.1               I 28 n 0
s Cercocebus_chrysogaster.k141_1945715         89588 1 -    105757 a
i Cercocebus_chrysogaster.k141_1945715     C 0 n 0
s Cercocebus_lunulatus.k141_2748568             1636 1 -      4674 A
i Cercocebus_lunulatus.k141_2748568        I 25 n 0
s Cercocebus_torquatus.k141_2422586             1013 1 +      2016 A
i Cercocebus_torquatus.k141_2422586        I 28 n 0
s Cercopithecus_ascanius.k141_395955            1208 1 +     10858 A
i Cercopithecus_ascanius.k141_395955       I 25 n 1
s Cercopithecus_cephus.k141_294495              2671 1 -      5583 A
i Cercopithecus_cephus.k141_294495         I 25 C 0
s Cercopithecus_diana.k141_1081769               726 1 +     19156 A
i Cercopithecus_diana.k141_1081769         n 13 n 13
s Cercopithecus_hamlyni.k141_1438427            5514 1 -     46742 A
i Cercopithecus_hamlyni.k141_1438427       I 25 C 0
s Cercopithecus_lowei.k141_3362039              1109 1 -      3644 A
i Cercopithecus_lowei.k141_3362039         I 12 n 1
s Cercopithecus_albogularis.ctg631                   22384 1 -     59035 A
i Cercopithecus_albogularis.ctg631               I 178 n 1
s Cercopithecus_mona.ctg42                  15304002 1 +  20621893 A
i Cercopithecus_mona.ctg42                 I 25 C 0
s Cercopithecus_neglectus.k141_2633140         10622 1 -     57664 A
i Cercopithecus_neglectus.k141_2633140     I 87 n 1
s Cercopithecus_nictitans.k141_3061810         12438 1 +     16647 a
i Cercopithecus_nictitans.k141_3061810     C 0 n 0
s Cercopithecus_petaurista.k141_1954245         2114 1 -     33246 A
i Cercopithecus_petaurista.k141_1954245    I 25 C 0
s Cercopithecus_pogonias.k141_1128599            521 1 +      1109 a
i Cercopithecus_pogonias.k141_1128599      I 12 n 12
s Cercopithecus_roloway.k141_2547499           13628 1 +     32417 a
i Cercopithecus_roloway.k141_2547499       I 28 n 28
s Chlorocebus_aethiops.ctg56                12889744 1 +  17892486 A
i Chlorocebus_aethiops.ctg56               I 25 n 25
s Chlorocebus_pygerythrus.k141_1442421          3325 1 -     16834 A
i Chlorocebus_pygerythrus.k141_1442421     I 180 N 0
s Chlorocebus_sabaeus.CM001947.1            33758655 1 - 135778131 A
i Chlorocebus_sabaeus.CM001947.1           I 87 N 0
s Colobus_angolensis.KN983729.1             10741419 1 +  35326507 A
i Colobus_angolensis.KN983729.1            I 8 N 0
s Colobus_guereza.LG01                      13229368 1 - 200372422 a
i Colobus_guereza.LG01                     I 8 N 0
s Colobus_polykomos.k141_1815305               13538 1 +     49352 A
i Colobus_polykomos.k141_1815305           I 8 N 0
s Erythrocebus_patas.Contig40               15742555 1 +  21278523 A
i Erythrocebus_patas.Contig40              I 25 N 0
s Gorilla_beringei.k141_1529327                16968 1 +     19115 A
i Gorilla_beringei.k141_1529327            C 0 C 0
s Lophocebus_aterrimus.ctg47                 6876770 1 -  17053299 A
i Lophocebus_aterrimus.ctg47               C 0 C 0
s Macaca_arctoides.k141_1473862                 5644 1 -     32707 a
i Macaca_arctoides.k141_1473862            I 148 N 0
s Macaca_assamensis.Contig5                 34322470 1 -  60120075 A
i Macaca_assamensis.Contig5                I 25 N 0
s Macaca_cyclopis.k119_512377                   6003 1 +     21625 A
i Macaca_cyclopis.k119_512377              I 25 C 0
s Macaca_fascicularis.k141_1173983             18998 1 -     25728 A
i Macaca_fascicularis.k141_1173983         I 9 n 9
s Macaca_fuscata.k119_959180                    5706 1 +     11606 a
i Macaca_fuscata.k119_959180               I 28 n 1
s Macaca_leonina.k141_3706292                  14367 1 -     29935 A
i Macaca_leonina.k141_3706292              I 25 N 0
s Macaca_maura.k141_1914888                    10279 1 -     25759 A
i Macaca_maura.k141_1914888                I 87 N 0
s Macaca_mulatta.NC_041756.1                54488664 1 + 185288947 A
i Macaca_mulatta.NC_041756.1               N 0 N 0
s Macaca_nemestrina.KQ005114.1               9180878 1 -   9503891 A
i Macaca_nemestrina.KQ005114.1             I 25 n 13
s Macaca_nigra.k141_563100                      9037 1 +     15148 A
i Macaca_nigra.k141_563100                 I 25 N 0
s Macaca_radiata.k141_501718                    2763 1 +     18260 A
i Macaca_radiata.k141_501718               I 25 C 0
s Macaca_siberu.k141_780928                    15910 1 +     22516 A
i Macaca_siberu.k141_780928                I 177 N 0
s Macaca_silenus.Contig1                    14194853 1 +  84276269 A
i Macaca_silenus.Contig1                   I 25 N 0
s Macaca_thibetana.k99_179800                   4628 1 +     12326 A
i Macaca_thibetana.k99_179800              I 28 n 1
s Macaca_tonkeana.k141_305781                  17352 1 +     94123 A
i Macaca_tonkeana.k141_305781              I 28 n 1
s Mandrillus_leucophaeus.scaffold284         9283785 1 -  27319382 A
i Mandrillus_leucophaeus.scaffold284       I 87 C 0
s Mandrillus_sphinx.Contig7                 14441359 1 +  51421834 A
i Mandrillus_sphinx.Contig7                I 25 C 0
s Nasalis_larvatus.k141_328248                 11114 1 +     15287 a
i Nasalis_larvatus.k141_328248             I 8 N 0
s Pan_paniscus.CM003385.1                  131191829 1 + 247869975 A
i Pan_paniscus.CM003385.1                  I 28 n 167
s Pan_troglodytes.CM009240.2               110737425 1 - 128755405 a
i Pan_troglodytes.CM009240.2               I 28 n 0
s Papio_anubis.CM001495.2                   34020765 1 - 183742232 A
i Papio_anubis.CM001495.2                  C 0 C 0
s Papio_cynocephalus.k141_1178521               2085 1 -      3223 A
i Papio_cynocephalus.k141_1178521          I 12 n 12
s Papio_hamadryas.Contig36                  14844008 1 +  22161365 A
i Papio_hamadryas.Contig36                 C 0 C 0
s Papio_kindae.k141_5192634                     6318 1 -      7104 a
i Papio_kindae.k141_5192634                C 0 n 0
s Papio_papio.k141_2436119                     35270 1 -     56783 A
i Papio_papio.k141_2436119                 C 0 C 0
s Papio_ursinus.k141_4118998                    5404 1 +      5483 A
i Papio_ursinus.k141_4118998               I 12 n 1
s Piliocolobus_badius.k141_1592142              1925 1 +      8439 A
i Piliocolobus_badius.k141_1592142         I 8 n 8
s Piliocolobus_gordonorum.k141_399085           8169 1 -     13842 T
i Piliocolobus_gordonorum.k141_399085      I 28 n 28
s Piliocolobus_kirkii.k141_1370971              7383 1 -     12918 T
i Piliocolobus_kirkii.k141_1370971         I 28 C 0
s Piliocolobus_tephrosceles.PDMG02000071.1  32995405 1 -  33944683 A
i Piliocolobus_tephrosceles.PDMG02000071.1 I 28 N 0
s Pongo_abelii.CM009264.2                     449366 1 + 129937803 A
i Pongo_abelii.CM009264.2                  C 0 C 0
s Pongo_pygmaeus.ctg463                       318045 1 -    482523 A
i Pongo_pygmaeus.ctg463                    C 0 n 0
s Presbytis_comata.k141_1013241                18707 1 +     21385 a
i Presbytis_comata.k141_1013241            I 28 n 28
s Presbytis_mitrata.k141_605190                26655 1 +     42743 A
i Presbytis_mitrata.k141_605190            I 28 C 0
s Pygathrix_cinerea.k141_145450                 4172 1 +      7128 a
i Pygathrix_cinerea.k141_145450            I 8 N 0
s Pygathrix_nigripes_b.ctg443                    245699 1 -    297984 a
i Pygathrix_nigripes_b.ctg443                 I 8 n 8
s Pygathrix_nigripes_a.k141_320050               10994 1 +     22551 a
i Pygathrix_nigripes_a.k141_320050           I 8 N 0
s Rhinopithecus_bieti.k119_96236                6891 1 +     11866 a
i Rhinopithecus_bieti.k119_96236           I 8 N 0
s Rhinopithecus_roxellana.NC_044554.1       37415032 1 + 156498330 a
i Rhinopithecus_roxellana.NC_044554.1      I 8 N 0
s Rhinopithecus_strykeri.ctg264              1311963 1 -   1425303 a
i Rhinopithecus_strykeri.ctg264            I 8 N 0
s Theropithecus_gelada.CM009952.1          182322954 1 - 183260707 A
i Theropithecus_gelada.CM009952.1          I 28 n 1
e Trachypithecus_pileatus.k141_682999           1654 1 -     32980 I
e Trachypithecus_phayrei.ctg17              64155710 1 +  64442595 I
e Trachypithecus_obscurus.k141_838013           3010 1 +      6290 I
e Trachypithecus_melamera.k141_283087           5571 1 +      6832 I
e Trachypithecus_leucocephalus.k141_307502      6220 1 -     13282 I
e Trachypithecus_hatinhensis.k141_631947        3469 1 +     11632 I
e Trachypithecus_germaini.k141_922466           9949 1 -     11678 I
e Trachypithecus_geei.k141_975773              17556 1 +     48972 I
e Trachypithecus_cristatus.k141_249100          7039 1 +     39750 I
e Trachypithecus_crepusculus.k141_460762       10835 1 -     15745 I
e Trachypithecus_auratus.k141_134546            9953 1 +     42513 I
e Semnopithecus_vetulus.k141_490351             5241 1 -     39714 I
e Semnopithecus_schistaceus.k141_929466        46370 1 -     62879 I
e Semnopithecus_priam.k141_363457                 95 1 -      2169 I
e Semnopithecus_johnii.k141_1602740             4413 1 +     77299 I
e Semnopithecus_hypoleucos.k141_2248933        47078 1 +    111052 I

a score=0.000000
s hg38.chrM                                    12921 66 +     16569 TGAGA--CCC----A--C-AACA-AATAGCCCTTCTAAACGCTAATCCAAGCCTCACCCCACTACTAGGCCTCCTC
s Allenopithecus_nigroviridis.k141_1132383     15599 15 +     82989 tgaga--ctt----t--c-aaca-a---------------------------------------------------
i Allenopithecus_nigroviridis.k141_1132383 I 152 N 0
s Allochrocebus_lhoesti.k141_2296955           22292 15 -     43988 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Allochrocebus_lhoesti.k141_2296955       I 1 N 0
s Allochrocebus_preussi.k141_1679966           19326 15 +     25248 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Allochrocebus_preussi.k141_1679966       I 1 N 0
s Allochrocebus_solatus.k141_2155072           13135 15 -     23979 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Allochrocebus_solatus.k141_2155072       I 1 N 0
s Cercocebus_atys.KQ010939.1                29210392 15 +  29793205 TGAga--att----t--t-aaca-a---------------------------------------------------
i Cercocebus_atys.KQ010939.1               I 88 N 0
s Cercocebus_chrysogaster.k141_129667          31220 15 -     34785 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Cercocebus_chrysogaster.k141_129667      I 27 N 0
s Cercocebus_lunulatus.k141_1448852             7638 15 -     50786 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Cercocebus_lunulatus.k141_1448852        I 88 N 0
s Cercocebus_torquatus.k141_301629              7723 15 -     11288 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Cercocebus_torquatus.k141_301629         I 88 N 0
s Cercopithecus_ascanius.k141_4105459            954 15 -      9485 TGAGA--CCC----T--C-AACA-A---------------------------------------------------
i Cercopithecus_ascanius.k141_4105459      I 1 N 0
s Cercopithecus_cephus.k141_294495              2672 15 -      5583 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Cercopithecus_cephus.k141_294495         C 0 N 0
s Cercopithecus_diana.k141_2154515              3320 15 -      9500 TGGGA--CTT----T--A-AACA-A---------------------------------------------------
i Cercopithecus_diana.k141_2154515         I 13 N 0
s Cercopithecus_hamlyni.k141_1438427            5515 15 -     46742 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Cercopithecus_hamlyni.k141_1438427       C 0 N 0
s Cercopithecus_lowei.k141_1815585              3987 15 +      4563 TGAGA--CCC----T--C-AACA-A---------------------------------------------------
i Cercopithecus_lowei.k141_1815585         I 1 N 0
s Cercopithecus_albogularis.ctg1272                   8672 15 +     15939 TGAGA--TAT----T--C-AACA-A---------------------------------------------------
i Cercopithecus_albogularis.ctg1272              I 1 N 0
s Cercopithecus_mona.ctg42                  15304003 15 +  20621893 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Cercopithecus_mona.ctg42                 C 0 N 0
s Cercopithecus_neglectus.k141_790885           2694 15 -      7576 TGAGA--CCC----T--C-AACA-A---------------------------------------------------
i Cercopithecus_neglectus.k141_790885      I 1 N 0
s Cercopithecus_nictitans.k141_4976              281 15 +      1179 tgaga--cat----t--c-aaca-a---------------------------------------------------
i Cercopithecus_nictitans.k141_4976        I 90 N 0
s Cercopithecus_petaurista.k141_1954245         2115 15 -     33246 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Cercopithecus_petaurista.k141_1954245    C 0 N 0
s Cercopithecus_pogonias.k141_3289668            838 15 +      1681 tggga--ctt----t--a-aaca-a---------------------------------------------------
i Cercopithecus_pogonias.k141_3289668      I 30 N 0
s Cercopithecus_roloway.k141_2783013           28521 15 -     43083 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Cercopithecus_roloway.k141_2783013       I 88 N 0
s Chlorocebus_aethiops.ctg60                 8813406 15 -   8865816 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Chlorocebus_aethiops.ctg60               I 706 N 0
s Chlorocebus_pygerythrus.k141_3312332         14296 15 +     24175 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Chlorocebus_pygerythrus.k141_3312332     N 0 N 0
s Chlorocebus_sabaeus.CM001942.1            32609857 15 -  90373283 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Chlorocebus_sabaeus.CM001942.1           N 0 N 0
s Colobus_angolensis.KN982630.1               253698 15 +    943325 TGaga--ctt----t--c-aaca-a---------------------------------------------------
i Colobus_angolensis.KN982630.1            N 0 N 0
s Colobus_guereza.LG06                      15035974 15 - 158929534 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Colobus_guereza.LG06                     N 0 N 0
s Colobus_polykomos.k141_620417                 3842 15 +     15364 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Colobus_polykomos.k141_620417            N 0 N 0
s Erythrocebus_patas.Contig199                921710 15 -   2283877 TGAGA--CAT----A--C-AACA-A---------------------------------------------------
i Erythrocebus_patas.Contig199             N 0 N 0
s Gorilla_beringei.k141_1529327                16969 15 +     19115 TAAGA--ACC----T--C-AACA-A---------------------------------------------------
i Gorilla_beringei.k141_1529327            C 0 N 0
s Lophocebus_aterrimus.ctg47                 6876771 15 -  17053299 TGAGA--ATT----T--T-AACA-G---------------------------------------------------
i Lophocebus_aterrimus.ctg47               C 0 N 0
s Macaca_arctoides.k141_1064760                  842 15 +      1747 tgaga--ctt----t--c-aaca-a---------------------------------------------------
i Macaca_arctoides.k141_1064760            N 0 N 0
s Macaca_assamensis.Contig161                2135264 15 +   2307780 tgaga--ctt----t--c-aaca-g---------------------------------------------------
i Macaca_assamensis.Contig161              N 0 N 0
s Macaca_cyclopis.k119_512377                   6004 15 +     21625 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Macaca_cyclopis.k119_512377              C 0 N 0
s Macaca_fascicularis.k141_747886              24595 15 +     40098 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Macaca_fascicularis.k141_747886          I 88 N 0
s Macaca_fuscata.k119_1151878                   2398 15 +     14929 tgaga--ccc----t--c-aaca-a---------------------------------------------------
i Macaca_fuscata.k119_1151878              I 1 N 0
s Macaca_leonina.k141_1865415                   1335 15 -      4088 tgaga--ctt----t--c-aaca-a---------------------------------------------------
i Macaca_leonina.k141_1865415              N 0 N 0
s Macaca_maura.k141_374312                       664 15 -      1174 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Macaca_maura.k141_374312                 N 0 N 0
s Macaca_mulatta.NC_041758.1                34259768 15 - 187317192 TGaga--att----t--t-aaca-a---------------------------------------------------
i Macaca_mulatta.NC_041758.1               N 0 N 0
s Macaca_nemestrina.KQ004951.1               2234537 15 +   6857701 TGGGa--ctt----t--c-aaca-g---------------------------------------------------
i Macaca_nemestrina.KQ004951.1             I 13 N 0
s Macaca_nigra.k141_68240                       2618 15 +      4600 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Macaca_nigra.k141_68240                  N 0 N 0
s Macaca_radiata.k141_501718                    2764 15 +     18260 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Macaca_radiata.k141_501718               C 0 N 0
s Macaca_siberu.k141_773003                      981 15 +     16675 tgaga--ctt----t--c-aaca-a---------------------------------------------------
i Macaca_siberu.k141_773003                N 0 N 0
s Macaca_silenus.Contig887                     25574 15 -     57277 tgaga--ctt----t--c-aaca-a---------------------------------------------------
i Macaca_silenus.Contig887                 N 0 N 0
s Macaca_thibetana.k99_252870                   1830 15 -      7401 TGAGA--CCC----T--C-AACA-A---------------------------------------------------
i Macaca_thibetana.k99_252870              I 1 N 0
s Macaca_tonkeana.k141_461656                   7729 15 -     20280 tgaga--ccc----t--c-aaca-a---------------------------------------------------
i Macaca_tonkeana.k141_461656              I 1 N 0
s Mandrillus_leucophaeus.scaffold284         9283786 15 -  27319382 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Mandrillus_leucophaeus.scaffold284       C 0 N 0
s Mandrillus_sphinx.Contig7                 14441360 15 +  51421834 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Mandrillus_sphinx.Contig7                C 0 N 0
s Miopithecus_ogouensis.k141_170051             6970 15 +     16017 TGGGA--CTT----T--C-AACA-A---------------------------------------------------
i Miopithecus_ogouensis.k141_170051        N 0 N 0
s Nasalis_larvatus.k141_1008021                13319 15 -     24666 TGAGA--CTT----T--C-AGCA-A---------------------------------------------------
i Nasalis_larvatus.k141_1008021            N 0 N 0
s Pan_paniscus.CM003392.1                  115198644 66 - 138149186 TGAGA--CCC----A--C-AACA-AATAACCCTCCTAAATACTAATCCAAGCCTTACTCCACTGCTAGGCTTCCTC
i Pan_paniscus.CM003392.1                  I 13 I 22
s Pan_troglodytes.CM009247.2                88040605 66 - 110513671 TGAGA--CCC----A--C-AACA-AATAACCCTCCTAAATACTAATCCAAGCCTTACTCCACTGCTAGgcttcctc
i Pan_troglodytes.CM009247.2               I 565 I 22
s Papio_anubis.CM001495.2                   34020766 16 - 183742232 -GAGA--ATT----ACAT-AACA-A---------------------------------------------------
i Papio_anubis.CM001495.2                  C 0 N 0
s Papio_cynocephalus.k141_1747982               2175 15 +     16929 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Papio_cynocephalus.k141_1747982          I 88 N 0
s Papio_hamadryas.Contig36                  14844009 15 +  22161365 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Papio_hamadryas.Contig36                 C 0 N 0
s Papio_kindae.k141_2318205                    18207 15 -     48934 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Papio_kindae.k141_2318205                I 27 N 0
s Papio_papio.k141_2436119                     35271 15 -     56783 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Papio_papio.k141_2436119                 C 0 N 0
s Papio_ursinus.k141_2685680                   12540 15 +     15956 TGAGA--ATT----T--T-AACA-A---------------------------------------------------
i Papio_ursinus.k141_2685680               I 1 N 0
s Piliocolobus_badius.k141_1427614              3136 15 -      3240 TGAGC--CTT----C--C-AACA-A---------------------------------------------------
i Piliocolobus_badius.k141_1427614         I 30 N 0
s Piliocolobus_gordonorum.k141_1072001         11918 15 -     49362 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Piliocolobus_gordonorum.k141_1072001     I 30 N 0
s Piliocolobus_kirkii.k141_1370971              7384 15 -     12918 TGGGA--CTT----T--C-AACA-A---------------------------------------------------
i Piliocolobus_kirkii.k141_1370971         C 0 N 0
s Piliocolobus_tephrosceles.PDMG02000295.1   7510372 15 +   9045217 TGaga--ctt----t--c-aaca-a---------------------------------------------------
i Piliocolobus_tephrosceles.PDMG02000295.1 N 0 N 0
s Pongo_abelii.CM009264.2                     449367 15 + 129937803 TGAGa--gcc----t--c-aaca-a---------------------------------------------------
i Pongo_abelii.CM009264.2                  C 0 N 0
s Pongo_pygmaeus.ctg419                       445992 15 -    484106 TGAGA--GCC----T--C-AACA-A---------------------------------------------------
i Pongo_pygmaeus.ctg419                    I 255 N 0
s Presbytis_comata.k141_679163                 68683 15 +     72816 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Presbytis_comata.k141_679163             I 152 N 0
s Presbytis_mitrata.k141_605190                26656 15 +     42743 TGAGA--CTT----T--C-AACA-A---------------------------------------------------
i Presbytis_mitrata.k141_605190            C 0 N 0
s Pygathrix_cinerea.k141_1312320                5135 15 +      7059 TGGGA--CTT----T--C-AACA-A---------------------------------------------------
i Pygathrix_cinerea.k141_1312320           N 0 N 0
s Pygathrix_nigripes_b.ctg311                     69242 17 -   1369354 TGGGATCCTT----T--C-AACA-A---------------------------------------------------
i Pygathrix_nigripes_b.ctg311                 T 3848 N 0
s Pygathrix_nigripes_a.k141_317268                 104 15 -     20222 tggga--ctt----t--c-aaca-a---------------------------------------------------
i Pygathrix_nigripes_a.k141_317268           N 0 N 0
s Rhinopithecus_bieti.k119_479629               1807 15 +     11933 tgaga--ctt----t--c-aaca-a---------------------------------------------------
i Rhinopithecus_bieti.k119_479629          N 0 N 0
s Rhinopithecus_roxellana.NC_044554.1      119024023 15 - 156498330 TGaga--ctt----t--c-aaca-a---------------------------------------------------
i Rhinopithecus_roxellana.NC_044554.1      N 0 N 0
s Rhinopithecus_strykeri.ctg264                51655 15 +   1425303 tgaga--ctt----t--c-aaca-a---------------------------------------------------
i Rhinopithecus_strykeri.ctg264            N 0 N 0
s Semnopithecus_hypoleucos.k141_2248933        47079 15 +    111052 TGGGA--CTT----C--C-AACA-A---------------------------------------------------
i Semnopithecus_hypoleucos.k141_2248933    I 1 N 0
s Semnopithecus_johnii.k141_1602740             4414 15 +     77299 TGGGA--CTT----C--C-AACA-A---------------------------------------------------
i Semnopithecus_johnii.k141_1602740        I 1 N 0
s Semnopithecus_priam.k141_363457                 96 15 -      2169 tggga--ctt----c--c-aaca-a---------------------------------------------------
i Semnopithecus_priam.k141_363457          I 1 N 0
s Semnopithecus_schistaceus.k141_929466        46371 15 -     62879 TGGGA--CTT----C--C-AACA-A---------------------------------------------------
i Semnopithecus_schistaceus.k141_929466    I 1 N 0
s Semnopithecus_vetulus.k141_490351             5242 15 -     39714 TGGGA--CTT----C--C-AACA-A---------------------------------------------------
i Semnopithecus_vetulus.k141_490351        I 1 N 0
s Theropithecus_gelada.CM009959.1           91755016 15 - 130230028 TGGga--ctt----t--c-aaca-a---------------------------------------------------
i Theropithecus_gelada.CM009959.1          I 1 N 0
s Trachypithecus_auratus.k141_134546            9954 15 +     42513 tggga--ctt----t--c-agca-a---------------------------------------------------
i Trachypithecus_auratus.k141_134546       I 1 N 0
s Trachypithecus_crepusculus.k141_460762       10836 15 -     15745 TGGGA--CTT----T--C-AGCA-A---------------------------------------------------
i Trachypithecus_crepusculus.k141_460762   I 1 N 0
s Trachypithecus_cristatus.k141_249100          7040 15 +     39750 tggga--ctt----t--c-agca-a---------------------------------------------------
i Trachypithecus_cristatus.k141_249100     I 1 N 0
s Trachypithecus_francoisi.k141_685201          4506 15 +     12684 tggga--ctt----t--c-aaca-a---------------------------------------------------
i Trachypithecus_francoisi.k141_685201     N 0 N 0
s Trachypithecus_geei.k141_975773              17557 15 +     48972 TGGGA--CTT----T--C-AGCA-A---------------------------------------------------
i Trachypithecus_geei.k141_975773          I 1 N 0
s Trachypithecus_germaini.k141_922466           9950 15 -     11678 TGGGA--CTT----T--C-AACT-A---------------------------------------------------
i Trachypithecus_germaini.k141_922466      I 1 N 0
s Trachypithecus_hatinhensis.k141_631947        3470 15 +     11632 tggga--ctt----t--c-aaca-a---------------------------------------------------
i Trachypithecus_hatinhensis.k141_631947   I 1 N 0
s Trachypithecus_laotum.k141_640784            11640 15 +     19805 TGGGA--CTT----T--C-AACA-A---------------------------------------------------
i Trachypithecus_laotum.k141_640784        N 0 N 0
s Trachypithecus_leucocephalus.k141_307502      6221 15 -     13282 tggga--ctt----t--c-aaca-a---------------------------------------------------
i Trachypithecus_leucocephalus.k141_307502 I 1 N 0
s Trachypithecus_melamera.k141_283087           5572 15 +      6832 tgaga--ctt----t--c-aaca-a---------------------------------------------------
i Trachypithecus_melamera.k141_283087      I 1 N 0
s Trachypithecus_obscurus.k141_838013           3011 15 +      6290 TGGGA--CTT----T--C-AACT-A---------------------------------------------------
i Trachypithecus_obscurus.k141_838013      I 1 N 0
s Trachypithecus_phayrei.ctg17              64155711 15 +  64442595 TGGGA--CTT----T--C-AGCA-A---------------------------------------------------
i Trachypithecus_phayrei.ctg17             I 1 N 0
s Trachypithecus_pileatus.k141_682999           1655 15 -     32980 tggga--ctt----t--c-agca-a---------------------------------------------------
i Trachypithecus_pileatus.k141_682999      I 1 N 0

a score=0.000000
s hg38.chrM                     12987 22 +     16569 CTAGCAGCAGCAGGCAAATCAG
s Pan_paniscus.CM003392.1    22949779 22 + 138149186 atagcaatagcaataaaactag
i Pan_paniscus.CM003392.1    I 4516 C 0
s Pan_troglodytes.CM009247.2 22472306 22 + 110513671 atagcaatAgcaataaaactag
i Pan_troglodytes.CM009247.2 I 3065 C 0

a score=0.000000
s hg38.chrM                      13009 3 +     16569 CCC
s Pan_paniscus.CM003392.1    115198732 3 - 138149186 ctc
i Pan_paniscus.CM003392.1    I 22 I 74
s Pan_troglodytes.CM009247.2  88040693 3 - 110513671 ctc
i Pan_troglodytes.CM009247.2 I 22 I 69

a score=0.000000
s hg38.chrM                     13012 72 +     16569 AATTAGGTC---TCCACCCCTGACTCCCCTCAGCCATAGAAGGCCC-CACCCCAGTCTCAGCCCTACTCCACTCAA
s Pan_paniscus.CM003392.1    22949801 71 + 138149186 gaatagccccctttcacttctgagttccagaagttacccaaggcac-ccccctaatatccggcctactcctc----
i Pan_paniscus.CM003392.1    C 0 I 442
s Pan_troglodytes.CM009247.2 22472328 71 + 110513671 gaatagccccctttcacttctgagttccagaagttacccaaggcac-ccccctaatatccggcctactcctc----
i Pan_troglodytes.CM009247.2 C 0 I 443

a score=0.000000
s hg38.chrM                     13084 2 +     16569 GC
s Pan_paniscus.CM003392.1    22950314 2 + 138149186 TC
i Pan_paniscus.CM003392.1    I 442 n 442
s Pan_troglodytes.CM009247.2 22472842 2 + 110513671 TC
i Pan_troglodytes.CM009247.2 I 443 n 443

a score=0.000000
s hg38.chrM                      13086 1 +     16569 A
s Pan_paniscus.CM003392.1    115198809 1 - 138149186 A
i Pan_paniscus.CM003392.1    I 74 n 442
s Pan_troglodytes.CM009247.2  88040765 1 - 110513671 A
i Pan_troglodytes.CM009247.2 I 69 C 0

a score=0.000000
s hg38.chrM                     13087 22 +     16569 CTATAGTTGTAGCAGGAATC--TT
s Pan_paniscus.KT153251.1       12532 22 +     16605 CCATAGTCGTAGCAGGAGTC--TT
i Pan_paniscus.KT153251.1    I 167 C 0
s Pan_troglodytes.CM009247.2 88040766 22 - 110513671 CCATAGTCGTAGCAGGAGAC--TT
i Pan_troglodytes.CM009247.2 C 0 C 0

a score=0.000000
s hg38.chrM                     13109 3460 +     16569  
s Pan_paniscus.KT153251.1       12554   14 +     16605  
i Pan_paniscus.KT153251.1    C 0 N 0
s Pan_troglodytes.CM009247.2 88040788   14 - 110513671  
i Pan_troglodytes.CM009247.2 C 0 N 0

