![]() | Name | Last modified | Size | Description |
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![]() | Parent Directory | - | ||
![]() | hg38.refGene.gtf.gz | 2020-01-10 09:33 | 23M | |
![]() | hg38.ensGene.gtf.gz | 2020-01-10 09:33 | 27M | |
![]() | README.html | 2020-12-18 07:04 | 2.6K | |
![]() | md5sum.txt | 2023-08-29 15:26 | 221 | |
![]() | README.txt | 2023-11-01 13:20 | 2.1K | |
![]() | hg38.ncbiRefSeq.gtf.gz | 2023-11-22 10:02 | 42M | |
![]() | hg38.knownGene.gtf.gz | 2024-04-02 11:55 | 38M | |
This directory contains GTF files for the main gene transcript sets where available. They are sourced from the following gene model tables: ncbiRefSeq, refGene, ensGene, knownGene
Not all files are available for every assembly. For more information on the source tables see the respective data track description page in the assembly. For example: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg38&g=refGene
The files are created using the genePredToGtf utility with the additional -utr flag. Utilities can be found in the following directory: http://hgdownload.soe.ucsc.edu/admin/exe/
genePredToGtf -utr hg38 ncbiRefSeq hg38.ncbiRefSeq.gtf