This directory contains reciprocal-best netted chains for calJac3-tarSyr2. - calJac3.tarSyr2.rbest.net.gz: calJac3-referenced recip.best net to tarSyr2. - calJac3.tarSyr2.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from calJac3 to tarSyr2 through the recip.best net. - tarSyr2.calJac3.rbest.net.gz: tarSyr2-referenced recip.best net. - tarSyr2.calJac3.rbest.chain.gz: recip.best "liftOver" chains. - directory axtRBestNet/ - reciprocal best alignments in axt file format http://genome.ucsc.edu/goldenPath/help/axt.html