This directory contains reciprocal-best netted chains for calJac3-panTro5. - calJac3.panTro5.rbest.net.gz: calJac3-referenced recip.best net to panTro5. - calJac3.panTro5.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from calJac3 to panTro5 through the recip.best net. - panTro5.calJac3.rbest.net.gz: panTro5-referenced recip.best net. - panTro5.calJac3.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/calJac3.panTro5.rbest.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html