This directory contains reciprocal-best netted chains for caeJap4-caeSp51.

 - caeJap4.caeSp51.rbest.net.gz: caeJap4-referenced recip.best net to caeSp51.
 - caeJap4.caeSp51.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from caeJap4 to caeSp51 through the recip.best net.

 - caeSp51.caeJap4.rbest.net.gz: caeSp51-referenced recip.best net.
 - caeSp51.caeJap4.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/caeJap4.caeSp51.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html