This directory contains reciprocal-best netted chains for bruMal2-burXyl1.

 - bruMal2.burXyl1.rbest.net.gz: bruMal2-referenced recip.best net to burXyl1.
 - bruMal2.burXyl1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from bruMal2 to burXyl1 through the recip.best net.

 - burXyl1.bruMal2.rbest.net.gz: burXyl1-referenced recip.best net.
 - burXyl1.bruMal2.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/bruMal2.burXyl1.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html