This directory contains the Mar. 2006 assembly of the lancelet genome (UCSC version braFlo1; JGI v.1.0, March 2006) in one gzip-compressed FASTA file per chromosome. This assembly was produced by the US DOE Joint Genome Institute (JGI). For more information on the lancelet genome, see the project website at http://genome.jgi-psf.org/Brafl1/Brafl1.info.html. Files included in this directory: - chr*.fa.gz: compressed FASTA sequence of each chromosome. Repeats from WindowMasker and Tandem Repeats Finder (with period of 12 or less) are shown in lower case; non-repeating sequence is shown in upper case. - Checksum values for all files in this directory can be found in md5sum.txt. ------------------------------------------------------------------ If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/braFlo1/chromosomes. To download multiple files, use the "mget" command: mget ... - or - mget -a (to download all the files in the directory) Alternate methods to ftp access. Using an rsync command to download the entire directory: rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/braFlo1/chromosomes/ . For a single file, e.g. chrM.fa.gz rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/braFlo1/chromosomes/chrM.fa.gz . Or with wget, all files: wget --timestamping 'ftp://hgdownload.cse.ucsc.edu/goldenPath/braFlo1/chromosomes/*' With wget, a single file: wget --timestamping 'ftp://hgdownload.cse.ucsc.edu/goldenPath/braFlo1/chromosomes/chrM.fa.gz' -O chrM.fa.gz To uncompress the fa.gz files: gunzip .fa.gz ------------------------------------------------------------------ The lancelet sequence is made freely available before scientific publication by the JGI. Please see the JGI data release policy at http://genome.jgi-psf.org/Brafl1/Brafl1.download.html for usage restrictions and citation information.