This directory contains reciprocal-best netted chains for aquChr2-galGal6. - aquChr2.galGal6.rbest.net.gz: aquChr2-referenced recip.best net to galGal6. - aquChr2.galGal6.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from aquChr2 to galGal6 through the recip.best net. - galGal6.aquChr2.rbest.net.gz: galGal6-referenced recip.best net. - galGal6.aquChr2.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/aquChr2.galGal6.rbest.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html