This directory contains reciprocal-best netted chains for NA14311.hap2-hs1.

 - NA14311.hap2.hs1.rbest.net.gz: NA14311.hap2-referenced recip.best net to hs1.
 - NA14311.hap2.hs1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from NA14311.hap2 to hs1 through the recip.best net.

 - hs1.NA14311.hap2.rbest.net.gz: hs1-referenced recip.best net.
 - hs1.NA14311.hap2.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.NA14311.hap2.hs1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html