This directory contains reciprocal-best netted chains for GCA_963853865.1-GCA_963855885.1.

 - GCA_963853865.1.GCA_963855885.1.rbest.net.gz: GCA_963853865.1-referenced recip.best net to GCA_963855885.1.
 - GCA_963853865.1.GCA_963855885.1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from GCA_963853865.1 to GCA_963855885.1 through the recip.best net.

 - GCA_963855885.1.GCA_963853865.1.rbest.net.gz: GCA_963855885.1-referenced recip.best net.
 - GCA_963855885.1.GCA_963853865.1.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.GCA_963853865.1.GCA_963855885.1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html