This directory contains reciprocal-best netted chains for GCA_028858775.2-GCA_028885655.2.

 - GCA_028858775.2.GCA_028885655.2.rbest.net.gz: GCA_028858775.2-referenced recip.best net to GCA_028885655.2.
 - GCA_028858775.2.GCA_028885655.2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from GCA_028858775.2 to GCA_028885655.2 through the recip.best net.

 - GCA_028885655.2.GCA_028858775.2.rbest.net.gz: GCA_028885655.2-referenced recip.best net.
 - GCA_028885655.2.GCA_028858775.2.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.GCA_028858775.2.GCA_028885655.2.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html