GRC Incident:
GRC Incident database, to explore reasons why the assembly was changed
Fix Patches:
Investigate how assembly patches affect the liftOver alignment
Hg38 Diff:
Hg38 Diff shows contigs that were changed from hg19 to hg38
ReMap ChIP-seq:
ReMap, even though it has the same name, is a database of transcription factor binding sites, unrelated to NCBI ReMap
Assembly: Human Feb. 2009 (GRCh37/hg19)
Description
This track shows alignments from the hg19 to the hg38 genome assembly, used by the UCSC
liftOver tool and
NCBI's ReMap
service, respectively.
Display Conventions and Configuration
The track has three subtracks, one for UCSC and two for NCBI alignments.
The alignments are shown as "chains" of alignable regions. The display is similar to
the other chain tracks, see our
chain display documentation for more information.
ReMap 2.2 alignments were downloaded from the
NCBI FTP site and converted with the UCSC kent command line tools. Like all data processing for
the genome browser, the procedure is documented in our
hg19 makeDoc file.
Credits
Thanks to NCBI for making the ReMap data available and to Angie Hinrichs for the file conversion.