DB Cactus 241-way Track Settings
 
DB table version Cactus Alignment & Conservation of Placental Mammals from Zoonomia Project (241 Species)   (All Comparative Genomics tracks)

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Cactus Alignments ▾       Basewise Conservation (phyloP) ▾      
 
Cactus Alignments Configuration

Species selection:  + - default

  Primate  + -

pan_troglodytes
 pan_paniscus
 gorilla_gorilla
 pongo_abelii
 gibbon
macaca_fascicularis
 macaca_mulatta
 papio_anubis
 macaca_nemestrina
 mandrillus_leucophaeus
nasalis_larvatus
 erythrocebus_patas
 cercopithecus_neglectus
 chlorocebus_sabaeus
 semnopithecus_entellus
rhinopithecus_roxellana
 rhinopithecus_bieti
 pygathrix_nemaeus
 angolan colobus
 piliocolobus_tephrosceles
cercocebus_atys
 pithecia_pithecia
 ateles_geoffroyi
 aotus_nancymaae
 callicebus_donacophilus
alouatta_palliata
 cebus_albifrons
 white-faced sapajou
 saguinus_imperator
 squirrel monkey
callithrix_jacchus
 daubentonia_madagascariensis
 lemur_catta
 eulemur_fulvus
 eulemur_flavifrons
propithecus_coquereli
 indri_indri
 cheirogaleus_medius
 mirza_coquereli
 microcebus_murinus
nycticebus_coucang
 bushbaby

  Carnivore  + -

neomonachus_schauinslandi
 leptonychotes_weddellii
 mirounga_angustirostris
 pacific walrus
 zalophus_californianus
ursus_maritimus
 ailuropoda_melanoleuca
 panthera_tigris
 panthera_onca
 panthera_pardus
acinonyx_jubatus
 puma_concolor
 felis_nigripes
 cryptoprocta_ferox
 felis_catus
ailurus_fulgens
 lycaon_pictus
 canis_lupus_familiaris
 canis_lupus
 vulpes_lagopus
hyaena_hyaena
 paradoxurus_hermaphroditus
 mellivora_capensis
 enhydra_lutris
 pteronura_brasiliensis
helogale_parvula
 mungos_mungo
 spilogale_gracilis
 suricata_suricatta
 mustela_putorius

  Cetartiodactyla  + -

eubalaena_japonica
 eschrichtius_robustus
 balaenoptera_bonaerensis
 balaenoptera_acutorostrata
 ziphius_cavirostris
monodon_monoceros
 delphinapterus_leucas
 mesoplodon_bidens
 killer whale
 lipotes_vexillifer
tursiops_truncatus
 neophocaena_asiaeorientalis
 phocoena_phocoena
 platanista_gangetica
 inia_geoffrensis
kogia_breviceps
 hippopotamus_amphibius
 camelus_dromedarius
 camelus_ferus
 camelus_bactrianus
vicugna_pacos
 sus_scrofa
 giraffa_tippelskirchi
 okapia_johnstoni
 elaphurus_davidianus
catagonus_wagneri
 bubalus_bubalis
 rangifer_tarandus
 odocoileus_virginianus
 bison_bison
wild yak
 bos_indicus
 bos_taurus
 moschus_moschiferus
 pantholops_hodgsonii
beatragus_hunteri
 ovis_canadensis
 ovis_aries
 antilocapra_americana
 hemitragus_hylocrius
ammotragus_lervia
 capra_hircus
 capra_aegagrus
 saiga_tatarica
 tragulus_javanicus

  Chiroptera  + -

hipposideros_armiger
 rhinolophus_sinicus
 black flying-fox
 pteropus_vampyrus
 tadarida_brasiliensis
hipposideros_galeritus
 straw colored fruit bat
 miniopterus_schreibersii
 miniopterus_natalensis
 macroglossus_sobrinus
rousettus_aegyptiacus
 eptesicus_fuscus
 brandt's myotis (bat)
 little brown bat
 myotis_myotis
david's myotis (bat)
 mormoops_blainvillei
 megaderma_lyra
 parnell's mustached bat
 desmodus_rotundus
craseonycteris_thonglongyai
 anoura_caudifer
 murina_feae
 tonatia_saurophila
 carollia_perspicillata
pipistrellus_pipistrellus
 micronycteris_hirsuta
 noctilio_leporinus
 lasiurus_borealis
 artibeus_jamaicensis

  Rodents  + -

glis_glis
 graphiurus_murinus
 xerus_inauris
 spermophilus_dauricus
 castor_canadensis
squirrel
 aplodontia_rufa
 marmota_marmota
 hystrix_cristata
 heterocephalus_glaber
muscardinus_avellanarius
 cuniculus_paca
 chinchilla
 dasyprocta_punctata
 damara mole rat
ctenodactylus_gundi
 dinomys_branickii
 dolichotis_patagonum
 hydrochoerus_hydrochaeris
 cavia_tschudii
cavia_porcellus
 brazilian guinea pig
 kangaroo rat
 dipodomys_stephensi
 nannospalax_galili
thryonomys_swinderianus
 octodon_degus
 allactaga_bullata
 petromus_typicus
 perognathus_longimembris
zapus_hudsonius
 jaculus_jaculus
 ctenomys_sociabilis
 capromys_pilorides
 myocastor_coypus
cricetomys_gambianus
 peromyscus_maniculatus
 onychomys_torridus
 cricetulus_griseus
 ellobius_talpinus
mesocricetus_auratus
 ellobius_lutescens
 psammomys_obesus
 meriones_unguiculatus
 prairie vole
ondatra_zibethicus
 acomys_cahirinus
 sigmodon_hispidus
 mus_musculus
 mus_caroli
mus_spretus
 mus_pahari
 rattus_norvegicus

  Mammals  + -

galeopterus_variegatus
 ceratotherium_simum_cottoni
 ceratotherium_simum
 diceros_bicornis
 dicerorhinus_sumatrensis
tapirus_indicus
 tapirus_terrestris
 equus_asinus
 equus_przewalskii
 equus_caballus
tupaia_tana
 chinese tree shrew
 trichechus_manatus
 loxodonta_africana
 manis_pentadactyla
manis_javanica
 choloepus_didactylus
 choloepus_hoffmanni
 tolypeutes_matacus
 chaetophractus_vellerosus
oryctolagus_cuniculus
 lepus_americanus
 orycteropus_afer
 dasypus_novemcinctus
 myrmecophaga_tridactyla
tamandua_tetradactyla
 solenodon_paradoxus
 scalopus_aquaticus
 procavia_capensis
 heterohyrax_brucei
chrysochloris_asiatica
 uropsilus_gracilis
 condylura_cristata
 ochotona_princeps
 echinops_telfairi
cape elephant shrew
 erinaceus_europaeus
 shrew
 microgale_talazaci
 crocidura_indochinensis

Multiple alignment base-level:
Display bases identical to reference as dots
Display chains between alignments

Codon Translation:
Default species to establish reading frame:
No codon translation
Use default species reading frames for translation
Use reading frames for species if available, otherwise no translation
Use reading frames for species if available, otherwise use default species
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  Clade Mammals  All species 
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 DB Basewise Cons  DB table version PhyloP Basewise Conservation of Zoonomia 241 Placental Mammals   Data format 
 
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 DB Cactus Align  DB table version Cactus Alignments of Zoonomia 241 Placental Mammals   Data format 
Assembly: Human Dec. 2013 (GRCh38/hg38)