Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: NA201292Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/NA20129#2.bb
Item Count: 40,375
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart161440325Start position in chromosome
chromEnd193159850End position in chromosome
name19Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand-+ or - for strand
tSize248956422size of target sequence
qNameJAHEPD010000064.1name of query sequence
qSize31857730size of query sequence
qStart23245start of alignment on query sequence
qEnd31857301end of alignment on query sequence
chainScore2885825517score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1161440325193159850191000-248956422JAHEPD010000064.13185773023245318573012885825517
chr1193162252214832657341000-248956422JAHEPD010000084.121650645265216506452033622689
chr12148359302152090222501000-248956422JAHEPD010000242.1376330195837552135100154
chr12152091912199595281431000+248956422JAHEPD010000046.14748267304748119446288710
chr1219960955232717296801000+248956422JAHEPD010000080.1129141850129084021190742682
chr122855639122855682082181000+248956422JAHEPD010000080.1129141858722248872267741820
chr122855639122855685679541000+248956422JAHEPD010000080.1129141858742419874291444834
chr122855639122855836433351000+248956422JAHEPD010000080.11291418585720728724249158637
chr122855639422855682082951000+248956422JAHEPD010000080.1129141858834297883472240879
chr122855640022855682083081000+248956422JAHEPD010000080.1129141858740189874060940724