Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG035162Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG03516#2.bb
Item Count: 16,273
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart161441232Start position in chromosome
chromEnd200485211End position in chromosome
name26Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand++ or - for strand
tSize248956422size of target sequence
qNameJAGYYS010000044.1name of query sequence
qSize39004601size of query sequence
qStart20218start of alignment on query sequence
qEnd39004237end of alignment on query sequence
chainScore3663246623score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1161441232200485211261000+248956422JAGYYS010000044.13900460120218390042373663246623
chr1200485882212467591661000+248956422JAGYYS010000085.1119682590119673881131496078
chr1212488926228558282541000+248956422JAGYYS010000022.1162197660160351241510908001
chr122855639122855682059151000+248956422JAGYYS010000022.116219766161317121613214141689
chr122855639122855685657371000+248956422JAGYYS010000022.116219766160533701605386144840
chr122855639122855828226391000+248956422JAGYYS010000022.1162197661607126316073183181173
chr122855639122855828426361000+248956422JAGYYS010000022.1162197661609141716093336181646
chr1228556394231793224971000+248956422JAGYYS010000136.13167712110453162279297104422
chr122855640122855682059541000+248956422JAGYYS010000022.116219766161362041613662340838
chr122855640322855682059961000+248956422JAGYYS010000022.116219766161160481611646340087