Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG028181Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG02818#1.bb
Item Count: 17,387
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart149860924Start position in chromosome
chromEnd168464007End position in chromosome
name41Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand++ or - for strand
tSize248956422size of target sequence
qNameJAHEOS010000153.1name of query sequence
qSize18741136size of query sequence
qStart0start of alignment on query sequence
qEnd18732120end of alignment on query sequence
chainScore1754204159score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1149860924168464007411000+248956422JAHEOS010000153.1187411360187321201754204159
chr116847816021483432881000-248956422JAHEOS010000018.1462452256013462452204248636733
chr12148342342199596721531000+248956422JAHEOS010000162.1513050405130386482186062
chr1219961078231793224801000+248956422JAHEOS010000072.1119535970119480201103179016
chr122855639122855665672571000+248956422JAHEOS010000072.1119535978770214877047925879
chr122855639122855698552261000+248956422JAHEOS010000072.1119535978579845858046456463
chr122855639122855829527581000+248956422JAHEOS010000072.11195359786380428644448180508
chr122855639322855830727491000+248956422JAHEOS010000072.11195359786178918619830181742
chr122855639622855665672941000+248956422JAHEOS010000072.1119535978687302868756225397
chr122855640022855665673241000+248956422JAHEOS010000072.1119535978602235860249124997