Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG027231Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG02723#1.bb
Item Count: 34,535
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart161440084Start position in chromosome
chromEnd168463854End position in chromosome
name113Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand++ or - for strand
tSize248956422size of target sequence
qNameJAHEOU010000109.1name of query sequence
qSize6957779size of query sequence
qStart10419start of alignment on query sequence
qEnd6954435end of alignment on query sequence
chainScore650912559score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr11614400841684638541131000+248956422JAHEOU010000109.16957779104196954435650912559
chr1168472369215208975121000+248956422JAHEOU010000037.1466415320466415314393227278
chr1192003133192003239155281000+248956422JAHEOU010000037.14664153223526042235261367675
chr1215213446228558337761000-248956422JAHEOU010000115.1134887063965133231881249296863
chr122855636722855836429871000-248956422JAHEOU010000115.1134887061341472813417201189057
chr122855638522855836429791000-248956422JAHEOU010000115.1134887061342638413428381189400
chr122855639122855682276911000-248956422JAHEOU010000115.113488706134398121344024341797
chr122855639122855682276821000-248956422JAHEOU010000115.113488706134867891348722041880
chr122855639122855833430661000-248956422JAHEOU010000115.1134887061333687213343304184040
chr122855639122855836429981000+248956422JAHEOU010000069.1181616744015944397188117