Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG027171Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG02717#1.bb
Item Count: 24,350
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart143318369Start position in chromosome
chromEnd228647586End position in chromosome
name5Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand-+ or - for strand
tSize248956422size of target sequence
qNameJAHAOS010000010.1name of query sequence
qSize86157377size of query sequence
qStart917603start of alignment on query sequence
qEnd86156043end of alignment on query sequence
chainScore7370890770score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr114331836922864758651000-248956422JAHAOS010000010.186157377917603861560437370890770
chr122855641322855809628911000-248956422JAHAOS010000010.1861573778609654386107215158677
chr122855641422855682075401000-248956422JAHAOS010000010.186157377861391148613952039574
chr122855642922855831926081000+248956422JAHAOS010000138.131880382083322753181566
chr122855643222855682076731000-248956422JAHAOS010000010.186157377861055238610591137810
chr122855644022855682077451000-248956422JAHAOS010000010.186157377861256948612607437019
chr122855644222855787432861000+248956422JAHAOS010000138.131880381860520065137394
chr122855644322855682077611000-248956422JAHAOS010000010.186157377861279388612831536737
chr122855646122855824227441000-248956422JAHAOS010000010.1861573778608539086087199170979
chr1228556820228556856186351000-248956422JAHAOS010000010.18615737786105937861059733361