Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG025591Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG02559#1.bb
Item Count: 31,930
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart161440325Start position in chromosome
chromEnd247353503End position in chromosome
name9Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand-+ or - for strand
tSize248956422size of target sequence
qNameJAGYVK010000004.1name of query sequence
qSize85827105size of query sequence
qStart24581start of alignment on query sequence
qEnd85817660end of alignment on query sequence
chainScore7939845971score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr116144032524735350391000-248956422JAGYVK010000004.18582710524581858176607939845971
chr122855639122855685565271000-248956422JAGYVK010000004.185827105669682116696869344407
chr122855639222855681467631000-248956422JAGYVK010000004.185827105670375466703796841147
chr122855639522855681467751000-248956422JAGYVK010000004.185827105669995446699996340865
chr122855640022855681468271000-248956422JAGYVK010000004.185827105670576926705810640234
chr122855640322855681468861000-248956422JAGYVK010000004.185827105669570306695743939523
chr122855640422855681468851000-248956422JAGYVK010000004.185827105669883696698877939524
chr122855640722855685666361000-248956422JAGYVK010000004.185827105669413936694186243014
chr122855640822855681468791000-248956422JAGYVK010000004.185827105670420446704245039574
chr122855641922855681469511000-248956422JAGYVK010000004.185827105670197306702012538510