Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG024861Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG02486#1.bb
Item Count: 22,301
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart162261628Start position in chromosome
chromEnd228558303End position in chromosome
name13Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand++ or - for strand
tSize248956422size of target sequence
qNameJAGYVM010000027.1name of query sequence
qSize66311788size of query sequence
qStart1start of alignment on query sequence
qEnd66223319end of alignment on query sequence
chainScore6234665479score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1162261628228558303131000+248956422JAGYVM010000027.1663117881662233196234665479
chr122855639122855682262821000+248956422JAGYVM010000027.166311788662415146624865939547
chr122855639122855682261551000+248956422JAGYVM010000027.166311788662795866628001741592
chr122855639122855682261431000+248956422JAGYVM010000027.166311788662325626623299341797
chr122855639122855790529651000+248956422JAGYVM010000270.1994406878270324145040
chr122855639122855836424431000+248956422JAGYVM010000270.1994404864755113187245
chr122855639522855836424271000+248956422JAGYVM010000270.1994407326875263188760
chr122855639622855682261691000+248956422JAGYVM010000027.166311788662840696628449541315
chr122855639722855682261721000+248956422JAGYVM010000027.166311788662683996626882441307
chr122855640122855682261831000+248956422JAGYVM010000027.166311788663042316630465241029