Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG021482Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG02148#2.bb
Item Count: 49,755
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart143318369Start position in chromosome
chromEnd168463874End position in chromosome
name48Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand-+ or - for strand
tSize248956422size of target sequence
qNameJAHAMF010000086.1name of query sequence
qSize28914357size of query sequence
qStart3570995start of alignment on query sequence
qEnd28909522end of alignment on query sequence
chainScore1824105338score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1143318369168463874481000-248956422JAHAMF010000086.1289143573570995289095221824105338
chr116847816024668970161000-248956422JAHAMF010000038.1783636907185783609517243310659
chr1228556391228556814106151000-248956422JAHAMF010000038.178363690602410916026823634511
chr122855639122855681497551000-248956422JAHAMF010000038.178363690602187156021913841247
chr122855639722855681498301000-248956422JAHAMF010000038.178363690602030776020349440665
chr122855640122855681498741000-248956422JAHAMF010000038.178363690602388606023927340265
chr122855640222855681498911000-248956422JAHAMF010000038.178363690601582746015868640174
chr1228556404228556624138661000-248956422JAHAMF010000038.178363690602589296025914921253
chr122855640922855681499571000-248956422JAHAMF010000038.178363690601224456012285039483
chr122855641022855685696101000-248956422JAHAMF010000038.178363690601381126013858242765