Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG021481Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG02148#1.bb
Item Count: 30,550
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart145127737Start position in chromosome
chromEnd168463958End position in chromosome
name54Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand-+ or - for strand
tSize248956422size of target sequence
qNameJAHAMG010000096.1name of query sequence
qSize23524008size of query sequence
qStart60150start of alignment on query sequence
qEnd23517104end of alignment on query sequence
chainScore1749868225score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1145127737168463958541000-248956422JAHAMG010000096.12352400860150235171041749868225
chr116847196622855830371000+248956422JAHAMG010000008.1600746372632600423965655788403
chr1178371333178371352272671000+248956422JAHAMG010000008.160074637990706399070821810
chr120605251820605296975051000+248956422JAHAMG010000008.160074637376167263761717841297
chr122855638922855836428231000+248956422JAHAMG010000052.1182035819306695067189220
chr122855639122855682274741000+248956422JAHAMG010000008.160074637600516456005207641797
chr122855639122855682274631000+248956422JAHAMG010000008.160074637600605896006102042011
chr122855639122855789634891000+248956422JAHAMG010000052.1182035818858890121143811
chr122855639122855816730731000+248956422JAHAMG010000052.1182035814828750088169766
chr122855639122855836428371000+248956422JAHAMG010000052.1182035816843774914187783