Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG021452Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG02145#2.bb
Item Count: 32,275
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart164871321Start position in chromosome
chromEnd168464007End position in chromosome
name153Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand++ or - for strand
tSize248956422size of target sequence
qNameJAHKSF010000102.1name of query sequence
qSize3607187size of query sequence
qStart0start of alignment on query sequence
qEnd3599509end of alignment on query sequence
chainScore337478693score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr11648713211684640071531000+248956422JAHKSF010000102.1360718703599509337478693
chr116847816022790738121000-248956422JAHKSF010000019.1593038796290593038795474859625
chr1205563452205563500284081000-248956422JAHKSF010000019.15930387937006048370060721769
chr12279153332317932501511000-248956422JAHKSF010000154.1402977267264021224356485775
chr1228556391228556624111771000-248956422JAHKSF010000154.1402977280158280181522301
chr1228556395228556656105101000-248956422JAHKSF010000154.1402977278141078167125497
chr1228556401228556656106481000-248956422JAHKSF010000154.1402977286217686243124897
chr1228556402228556656106831000-248956422JAHKSF010000154.1402977275891575916924581
chr122855641122855833129171000-248956422JAHKSF010000154.14029772669359675783181409
chr1228556413228556656108811000-248956422JAHKSF010000154.1402977279935879960123733