Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG019521Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG01952#1.bb
Item Count: 55,065
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart161440081Start position in chromosome
chromEnd228558350End position in chromosome
name9Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand-+ or - for strand
tSize248956422size of target sequence
qNameJAHAME010000002.1name of query sequence
qSize67241394size of query sequence
qStart2972start of alignment on query sequence
qEnd67128122end of alignment on query sequence
chainScore6202551158score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr116144008122855835091000-248956422JAHAME010000002.1672413942972671281226202551158
chr122855639122855755748151000-248956422JAHAME010000002.1672413946722018267221360110774
chr122855639722855828932191000+248956422JAHAME010000111.132232465300354923180853
chr122855639822855828932231000+248956422JAHAME010000111.132232463065832578180690
chr122855640422855681498901000-248956422JAHAME010000002.167241394671440586714446839974
chr122855640922855681499461000-248956422JAHAME010000002.167241394671799026718030739483
chr1228556414228556814100291000-248956422JAHAME010000002.167241394671328756713327538656
chr1228556415228556814100181000-248956422JAHAME010000002.167241394672045296720492838770
chr1228556418228556814100371000-248956422JAHAME010000002.167241394671530406715343638610
chr122855641822855682299761000-248956422JAHAME010000002.167241394671642226716462639160