Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG018912Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG01891#2.bb
Item Count: 10,966
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart161440084Start position in chromosome
chromEnd231793224End position in chromosome
name14Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand++ or - for strand
tSize248956422size of target sequence
qNameJAGYVN010000013.1name of query sequence
qSize70453501size of query sequence
qStart10401start of alignment on query sequence
qEnd70443944end of alignment on query sequence
chainScore6611327443score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1161440084231793224141000+248956422JAGYVN010000013.17045350110401704439446611327443
chr11662119981662232455641000+248956422JAGYVN010000013.170453501479202848032751058428
chr116622324516622618920211000+248956422JAGYVN010000013.17045350147890844792028277403
chr1192003203192003219104621000+248956422JAGYVN010000013.17045350130596581305965971456
chr12075395642075566604481000+248956422JAGYVN010000013.17045350146181271461983671614641
chr120755668020755812133451000+248956422JAGYVN010000013.1704535014619836746199791120323
chr122855638622855683049701000+248956422JAGYVN010000013.170453501671756346717607843013
chr122855639122855682250151000+248956422JAGYVN010000013.170453501671957656719619641880
chr122855639122855682250081000+248956422JAGYVN010000013.170453501671577416715817242011
chr122855639322855683049991000+248956422JAGYVN010000013.170453501672225996722303642248