Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG018911Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG01891#1.bb
Item Count: 27,864
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart149359228Start position in chromosome
chromEnd228647668End position in chromosome
name11Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand-+ or - for strand
tSize248956422size of target sequence
qNameJAGYVO010000025.1name of query sequence
qSize79581395size of query sequence
qStart228044start of alignment on query sequence
qEnd79480253end of alignment on query sequence
chainScore7183866158score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1149359228228647668111000-248956422JAGYVO010000025.179581395228044794802537183866158
chr122855638422855662492511000-248956422JAGYVO010000025.179581395795705487957078822872
chr122855638422855681471621000-248956422JAGYVO010000025.179581395795302567953068641379
chr122855639222855830629711000-248956422JAGYVO010000025.1795813957949231879494238183494
chr122855640722855832130031000-248956422JAGYVO010000025.1795813957934918979355619181558
chr122855640822855685670701000-248956422JAGYVO010000025.179581395795437097954418142825
chr122855640922855681472881000-248956422JAGYVO010000025.179581395794432467944365139483
chr122855641322855681473311000-248956422JAGYVO010000025.179581395795034957950389638745
chr1228556413231793132891000-248956422JAGYVO010000060.13175115125723168374296065458
chr122855641522855681473191000-248956422JAGYVO010000025.179581395794230727942347138901