Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG012582Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG01258#2.bb
Item Count: 32,372
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart161440081Start position in chromosome
chromEnd200485218End position in chromosome
name24Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand++ or - for strand
tSize248956422size of target sequence
qNameJAGYYU010000024.1name of query sequence
qSize39110062size of query sequence
qStart40411start of alignment on query sequence
qEnd39107467end of alignment on query sequence
chainScore3670115549score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1161440081200485218241000+248956422JAGYYU010000024.13911006240411391074673670115549
chr1178371333178371352279281000+248956422JAGYYU010000024.13911006216982132169821511810
chr1200500979231793135331000-248956422JAGYYU010000055.1313028274877312961342931417163
chr1228556217228556227323721000-248956422JAGYYU010000055.13130282728017541280175511000
chr122855639122855682076871000-248956422JAGYYU010000055.131302827280344632803489241595
chr122855639422855685675441000-248956422JAGYYU010000055.131302827280972082809769443877
chr122855640122855682078841000-248956422JAGYYU010000055.131302827281375482813796639963
chr122855640822855682078741000-248956422JAGYYU010000055.131302827280389642803937640147
chr122855641322855682079081000-248956422JAGYYU010000055.131302827280680952806850239674
chr122855642622855682080001000-248956422JAGYYU010000055.131302827280860322808642638401