Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG012581Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG01258#1.bb
Item Count: 33,679
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart164507651Start position in chromosome
chromEnd200485218End position in chromosome
name28Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand++ or - for strand
tSize248956422size of target sequence
qNameJAGYYV010000048.1name of query sequence
qSize35984969size of query sequence
qStart11start of alignment on query sequence
qEnd35984951end of alignment on query sequence
chainScore3382289456score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1164507651200485218281000+248956422JAGYYV010000048.13598496911359849513382289456
chr1178371333178371352297991000+248956422JAGYYV010000048.13598496913870955138709741810
chr1200498266231793228331000-248956422JAGYYV010000068.1313240031841313198212930655819
chr12075451592075637164611000-248956422JAGYYV010000068.131324003704079270593491755403
chr122855639222855830727881000-248956422JAGYYV010000068.1313240032806799928072186182099
chr122855640022855779936811000-248956422JAGYYV010000068.1313240032815760328159028134273
chr122855640922855830127991000-248956422JAGYYV010000068.1313240032804117828043098181525
chr122855641322855752745581000-248956422JAGYYV010000068.1313240032805683028057968106430
chr122855641422855682086681000-248956422JAGYYV010000068.131324003281307412813114739574
chr122855641722855682087051000-248956422JAGYYV010000068.131324003280702662807066939283