Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG011752Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG01175#2.bb
Item Count: 51,274
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart161440058Start position in chromosome
chromEnd214815994End position in chromosome
name13Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand++ or - for strand
tSize248956422size of target sequence
qNameJAHALZ010000050.1name of query sequence
qSize53285628size of query sequence
qStart10195start of alignment on query sequence
qEnd53285627end of alignment on query sequence
chainScore5013039606score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1161440058214815994131000+248956422JAHALZ010000050.15328562810195532856275013039606
chr1178371333178371352430191000+248956422JAHALZ010000050.15328562816945207169452261810
chr11969180981970229662611000+248956422JAHALZ010000254.110487001048699871962
chr11970320701970856143221000+248956422JAHALZ010000280.1538450538445023070
chr11971022271971890332751000-248956422JAHALZ010000220.187290440872908141854
chr11971994941974029952241000-248956422JAHALZ010000275.120369818420369819136516
chr120605251820605296991811000+248956422JAHALZ010000050.153285628445514274455187941297
chr1214835930231793170561000-248956422JAHALZ010000081.116983273958169747011579769073
chr122855639122855776139341000-248956422JAHALZ010000081.1169832731380674913808131130120
chr122855639522855833531181000-248956422JAHALZ010000081.1169832731371500513737100181333