Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG011061Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG01106#1.bb
Item Count: 27,664
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart143317129Start position in chromosome
chromEnd231793127End position in chromosome
name8Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand-+ or - for strand
tSize248956422size of target sequence
qNameJAHAMC010000015.1name of query sequence
qSize97288398size of query sequence
qStart8607844start of alignment on query sequence
qEnd97282187end of alignment on query sequence
chainScore7670554599score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr114331712923179312781000-248956422JAHAMC010000015.1972883988607844972821877670554599
chr12273616782273868243411000+248956422JAHAMC010000166.1252310251482369215
chr1228556391228556624103571000-248956422JAHAMC010000015.197288398941241069412433922526
chr122855639422855685677771000-248956422JAHAMC010000015.197288398940346159403509344339
chr122855640122855681480991000-248956422JAHAMC010000015.197288398940122589401267140265
chr122855640522855685679201000-248956422JAHAMC010000015.197288398940457959404626243043
chr122855640522855829731391000-248956422JAHAMC010000205.1315682156723487180863
chr122855640822855832031061000-248956422JAHAMC010000015.1972883989395852393960442182773
chr122855640922855681481731000-248956422JAHAMC010000015.197288398939853959398580039483
chr122855640922855681481721000-248956422JAHAMC010000015.197288398941218839412228839483